Wall clock time and date at job start Wed Apr 1 2020 06:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34779 * 119.99701 * 2 1 4 4 O 1.21279 * 119.99924 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00503 * 180.02562 * 3 2 1 6 6 N 1.46891 * 109.47604 * 180.02562 * 5 3 2 7 7 C 1.46901 * 111.00115 * 169.99800 * 6 5 3 8 8 C 1.53247 * 109.33884 * 187.25166 * 7 6 5 9 9 N 1.47081 * 108.52344 * 306.17299 * 8 7 6 10 10 C 1.34776 * 120.87828 * 231.19161 * 9 8 7 11 11 O 1.21576 * 120.00083 * 5.87448 * 10 9 8 12 12 N 1.34776 * 119.99388 * 185.88518 * 10 9 8 13 13 C 1.39249 * 119.99590 * 185.49416 * 12 10 9 14 14 C 1.39687 * 119.57636 * 338.02987 * 13 12 10 15 15 C 1.38641 * 119.49525 * 180.02562 * 14 13 12 16 16 C 1.38344 * 118.67496 * 0.02562 * 15 14 13 17 17 C 1.40577 * 119.13035 * 359.97438 * 16 15 14 18 18 C 1.41338 * 119.78818 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99767 * 359.97438 * 18 17 16 20 20 C 1.40026 * 119.99853 * 179.97438 * 18 17 16 21 21 N 1.30750 * 120.00038 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99974 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46857 * 60.00629 * 22 20 18 24 24 H 1.48496 * 109.47018 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46847 * 300.00225 * 22 20 18 26 26 N 1.31906 * 119.57494 * 158.01193 * 13 12 10 27 27 C 1.47074 * 118.23577 * 51.45687 * 9 8 7 28 28 C 1.46900 * 111.00069 * 294.30060 * 6 5 3 29 29 H 1.09001 * 109.47121 * 60.00438 * 1 2 3 30 30 H 1.09003 * 109.46664 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47470 * 299.99691 * 1 2 3 32 32 H 0.97002 * 120.01072 * 180.02562 * 2 1 3 33 33 H 1.09004 * 109.46966 * 59.99329 * 5 3 2 34 34 H 1.09000 * 109.46807 * 300.00356 * 5 3 2 35 35 H 1.09004 * 109.49191 * 67.29627 * 7 6 5 36 36 H 1.08996 * 109.49573 * 307.21213 * 7 6 5 37 37 H 1.09002 * 109.62582 * 186.46214 * 8 7 6 38 38 H 1.08996 * 109.62540 * 65.88269 * 8 7 6 39 39 H 0.96991 * 120.00593 * 5.48534 * 12 10 9 40 40 H 1.07999 * 120.25164 * 359.72757 * 14 13 12 41 41 H 1.08000 * 120.66308 * 179.97438 * 15 14 13 42 42 H 1.08000 * 120.44050 * 180.02562 * 16 15 14 43 43 H 0.96998 * 119.99509 * 179.97438 * 21 20 18 44 44 H 1.08995 * 109.63216 * 68.25123 * 27 9 8 45 45 H 1.09002 * 109.62787 * 188.83714 * 27 9 8 46 46 H 1.08996 * 109.49062 * 292.70479 * 28 6 5 47 47 H 1.09000 * 109.49220 * 52.76176 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5323 2.2175 0.0005 5 6 3.6458 1.1675 -0.0006 6 7 4.1354 2.5524 0.0002 7 6 5.5843 2.5985 0.2378 8 6 6.0240 4.0562 0.4114 9 7 5.5598 4.8260 -0.7528 10 6 6.4097 5.6063 -1.4495 11 8 7.5965 5.5990 -1.1860 12 7 5.9436 6.3948 -2.4382 13 6 6.8328 7.1137 -3.2330 14 6 8.1147 7.3936 -2.7537 15 6 8.9984 8.1099 -3.5462 16 6 8.5793 8.5286 -4.7965 17 6 7.2766 8.2153 -5.2219 18 6 6.8342 8.6357 -6.4968 19 1 7.4962 9.1960 -7.1404 20 6 5.5377 8.3256 -6.9253 21 7 4.7362 7.6477 -6.1458 22 14 4.9532 8.8806 -8.6105 23 1 5.8272 8.2911 -9.6563 24 1 3.5541 8.4300 -8.8222 25 1 5.0134 10.3621 -8.6921 26 7 6.4539 7.5212 -4.4290 27 6 4.1425 4.7264 -1.1328 28 6 3.7782 3.2377 -1.2492 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.9501 -0.8400 -0.0004 33 1 4.0088 0.6538 -0.8908 34 1 4.0095 0.6534 0.8891 35 1 6.1065 2.1599 -0.6126 36 1 5.8228 2.0367 1.1408 37 1 7.1111 4.1058 0.4734 38 1 5.5834 4.4657 1.3204 39 1 4.9890 6.4615 -2.5962 40 1 8.4134 7.0588 -1.7713 41 1 9.9938 8.3373 -3.1943 42 1 9.2445 9.0880 -5.4376 43 1 3.8379 7.4333 -6.4426 44 1 3.5246 5.1990 -0.3694 45 1 3.9851 5.2192 -2.0922 46 1 4.3256 2.7902 -2.0787 47 1 2.7070 3.1390 -1.4247 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467206813.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:23:37 Heat of formation + Delta-G solvation = 16.687021 kcal Electronic energy + Delta-G solvation = -30402.241147 eV Core-core repulsion = 26200.577627 eV Total energy + Delta-G solvation = -4201.663520 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.55963 -39.93026 -38.38008 -37.39232 -34.94849 -34.51096 -34.29582 -33.17971 -31.16304 -30.30918 -29.91272 -28.88272 -27.05947 -25.43707 -24.65414 -23.90509 -22.18315 -21.52161 -20.87480 -20.70403 -19.16789 -18.13301 -17.60005 -17.37677 -16.46913 -16.31422 -15.96600 -15.51084 -15.31254 -14.99639 -14.84805 -14.74950 -14.44395 -14.42702 -14.03849 -13.77556 -13.58704 -13.26995 -12.97779 -12.84307 -12.66982 -12.28980 -12.19295 -12.11149 -11.93386 -11.49863 -11.35226 -11.26285 -11.18529 -11.02982 -10.84128 -10.60290 -10.08915 -10.07298 -9.79405 -9.50023 -9.19376 -8.94964 -8.76145 -8.37393 -7.96990 -7.61946 -7.02386 -6.36327 -4.45537 2.34009 2.66949 2.74694 2.89672 3.00849 3.10061 3.12911 3.29944 3.63316 3.76902 3.98063 4.22957 4.38438 4.69997 4.79424 4.83670 4.87715 4.88767 4.93816 5.12970 5.16555 5.23353 5.28409 5.39255 5.41855 5.69563 5.75486 5.81341 5.95724 5.99918 6.02332 6.20472 6.47556 6.51737 6.55801 6.77254 6.82863 6.86365 7.03855 7.10106 7.13558 7.26672 7.57084 7.66141 7.92267 7.96656 8.09876 8.22419 8.45751 8.75109 8.94256 9.09717 10.10814 10.36039 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011772 B = 0.002620 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.893560 B =10685.998791 C =12787.375644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.741 5.741 3 C 0.511 3.489 4 O -0.515 6.515 5 C 0.036 3.964 6 N -0.520 5.520 7 C 0.042 3.958 8 C 0.138 3.862 9 N -0.634 5.634 10 C 0.712 3.288 11 O -0.571 6.571 12 N -0.658 5.658 13 C 0.370 3.630 14 C -0.312 4.312 15 C -0.051 4.051 16 C -0.291 4.291 17 C 0.279 3.721 18 C -0.437 4.437 19 H 0.084 0.916 20 C 0.072 3.928 21 N -0.724 5.724 22 Si 0.907 3.093 23 H -0.266 1.266 24 H -0.279 1.279 25 H -0.265 1.265 26 N -0.508 5.508 27 C 0.117 3.883 28 C 0.039 3.961 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.401 0.599 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.042 0.958 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.403 0.597 40 H 0.139 0.861 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.270 0.730 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.037 0.963 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.091 -17.383 12.346 22.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.394 5.394 3 C 0.297 3.703 4 O -0.390 6.390 5 C -0.095 4.095 6 N -0.245 5.245 7 C -0.087 4.087 8 C 0.014 3.986 9 N -0.373 5.373 10 C 0.413 3.587 11 O -0.448 6.448 12 N -0.306 5.306 13 C 0.135 3.865 14 C -0.337 4.337 15 C -0.076 4.076 16 C -0.314 4.314 17 C 0.153 3.847 18 C -0.469 4.469 19 H 0.102 0.898 20 C -0.153 4.153 21 N -0.346 5.346 22 Si 0.731 3.269 23 H -0.191 1.191 24 H -0.204 1.204 25 H -0.190 1.190 26 N -0.227 5.227 27 C -0.006 4.006 28 C -0.089 4.089 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.234 0.766 33 H 0.082 0.918 34 H 0.123 0.877 35 H 0.060 0.940 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.090 0.910 39 H 0.240 0.760 40 H 0.156 0.844 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.081 0.919 44 H 0.097 0.903 45 H 0.105 0.895 46 H 0.055 0.945 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.976 -16.646 12.629 22.740 hybrid contribution 0.488 -0.586 -1.291 1.499 sum -8.488 -17.231 11.337 22.305 Atomic orbital electron populations 1.21518 0.79453 1.02125 1.02466 1.45812 1.07861 1.08710 1.77046 1.20627 0.90027 0.83689 0.75999 1.90709 1.70005 1.30941 1.47302 1.21947 0.92282 0.91992 1.03296 1.61626 1.13708 1.12831 1.36376 1.22573 0.86690 0.97993 1.01397 1.21481 1.01159 0.88658 0.87295 1.47361 1.09162 1.48492 1.32258 1.15681 0.84671 0.78841 0.79469 1.90776 1.13904 1.70182 1.69920 1.42404 1.10247 1.45483 1.32503 1.18262 0.87219 0.91620 0.89373 1.21828 0.95466 1.12228 1.04172 1.20828 0.97295 0.95444 0.94013 1.21702 0.98890 1.12304 0.98456 1.18165 0.86894 0.87764 0.91902 1.19504 0.97825 1.30423 0.99121 0.89797 1.26027 0.96759 0.93902 0.98592 1.70116 1.05645 1.24458 1.34366 0.86409 0.78109 0.80022 0.82336 1.19051 1.20362 1.18993 1.68020 1.35946 1.17451 1.01236 1.21803 0.81572 0.95878 1.01387 1.22724 1.02747 0.94283 0.89185 0.92179 0.90757 0.92178 0.76613 0.91785 0.87666 0.93973 0.89449 0.88235 0.91031 0.76030 0.84385 0.88412 0.88331 0.91877 0.90303 0.89537 0.94505 0.87935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.49 10.70 59.84 0.64 1.13 16 2 N -0.74 -4.39 5.71 -67.08 -0.38 -4.78 16 3 C 0.51 4.73 7.49 -10.98 -0.08 4.65 16 4 O -0.52 -6.98 14.33 5.56 0.08 -6.90 16 5 C 0.04 0.27 5.45 -4.98 -0.03 0.25 16 6 N -0.52 -5.49 4.37 -235.46 -1.03 -6.52 16 7 C 0.04 0.42 5.62 -3.70 -0.02 0.40 16 8 C 0.14 1.71 6.61 -3.60 -0.02 1.69 16 9 N -0.63 -9.71 3.00 -177.91 -0.53 -10.24 16 10 C 0.71 14.14 8.21 -86.92 -0.71 13.43 16 11 O -0.57 -12.87 12.47 5.30 0.07 -12.81 16 12 N -0.66 -14.16 5.26 -15.78 -0.08 -14.25 16 13 C 0.37 9.55 7.50 -154.99 -1.16 8.39 16 14 C -0.31 -7.93 8.89 -38.89 -0.35 -8.28 16 15 C -0.05 -1.25 10.15 -39.39 -0.40 -1.65 16 16 C -0.29 -7.50 9.83 -38.66 -0.38 -7.88 16 17 C 0.28 7.87 6.55 -84.99 -0.56 7.32 16 18 C -0.44 -11.86 9.14 -37.73 -0.34 -12.20 16 19 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 20 C 0.07 1.83 5.50 -17.34 -0.10 1.74 16 21 N -0.72 -19.11 11.46 55.55 0.64 -18.47 16 22 Si 0.91 18.77 29.56 -169.99 -5.02 13.74 16 23 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 24 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 25 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 26 N -0.51 -14.21 7.89 -10.25 -0.08 -14.29 16 27 C 0.12 1.58 6.51 -3.36 -0.02 1.55 16 28 C 0.04 0.48 5.27 -3.46 -0.02 0.46 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.40 1.08 8.83 -40.82 -0.36 0.72 16 33 H 0.06 0.42 8.13 -51.93 -0.42 -0.01 16 34 H 0.11 0.54 7.97 -51.93 -0.41 0.12 16 35 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.63 7.99 -51.93 -0.41 0.22 16 37 H 0.10 1.33 7.04 -51.93 -0.37 0.96 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.40 7.94 6.49 -40.82 -0.26 7.67 16 40 H 0.14 3.49 5.19 -52.81 -0.27 3.22 16 41 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 42 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 43 H 0.27 6.48 8.29 -40.82 -0.34 6.14 16 44 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.09 1.20 5.87 -51.93 -0.30 0.90 16 46 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.10 1.32 5.76 -51.93 -0.30 1.02 16 LS Contribution 381.31 15.07 5.75 5.75 Total: -1.00 -35.39 381.31 -10.63 -46.02 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -6.47 Total: 11.77 kcal Atomic # 6 Polarization: 14.53 SS G_CDS: -3.55 Total: 10.98 kcal Atomic # 7 Polarization: -67.07 SS G_CDS: -1.47 Total: -68.55 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: 0.15 Total: -19.71 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.39 -10.63 -46.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467206813.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.708 kcal (2) G-P(sol) polarization free energy of solvation -35.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds