Wall clock time and date at job start Wed Apr 1 2020 06:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86804 * 119.99601 * 2 1 4 4 H 1.48504 * 109.47005 * 270.00181 * 3 2 1 5 5 H 1.48495 * 109.47063 * 29.99830 * 3 2 1 6 6 H 1.48495 * 109.47121 * 150.00080 * 3 2 1 7 7 C 1.38950 * 120.00499 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99473 * 359.97438 * 7 2 1 9 9 N 1.37091 * 120.00027 * 180.02562 * 7 2 1 10 10 C 1.34778 * 119.99737 * 180.02562 * 9 7 2 11 11 O 1.21300 * 120.00112 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99789 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.46991 * 186.27144 * 12 10 9 14 14 C 1.46959 * 110.99826 * 66.36980 * 13 12 10 15 15 C 1.53045 * 109.36410 * 183.18651 * 14 13 12 16 16 N 1.46959 * 109.36547 * 301.59668 * 15 14 13 17 17 C 1.37996 * 111.00040 * 183.18737 * 16 15 14 18 18 N 1.32870 * 120.04184 * 0.02562 * 17 16 15 19 19 C 1.32846 * 119.82086 * 179.97438 * 18 17 16 20 20 N 1.37995 * 120.04168 * 179.97438 * 19 18 17 21 21 N 1.33115 * 119.91509 * 0.02562 * 19 18 17 22 22 C 1.32138 * 120.08780 * 0.02562 * 21 19 18 23 23 C 1.50698 * 119.91127 * 180.02562 * 22 21 19 24 24 C 1.53001 * 117.50034 * 59.99908 * 23 22 21 25 25 C 1.53003 * 60.03070 * 252.47282 * 24 23 22 26 26 N 1.32166 * 120.17675 * 0.26662 * 22 21 19 27 27 C 1.46963 * 110.87544 * 59.32381 * 16 15 14 28 28 C 1.46953 * 111.00064 * 190.16923 * 13 12 10 29 29 H 0.96998 * 120.00459 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00473 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47073 * 66.27721 * 12 10 9 32 32 H 1.08989 * 109.47203 * 306.27233 * 12 10 9 33 33 H 1.09004 * 109.49005 * 63.22078 * 14 13 12 34 34 H 1.08998 * 109.49067 * 303.15609 * 14 13 12 35 35 H 1.09006 * 109.48905 * 181.63227 * 15 14 13 36 36 H 1.09000 * 109.51064 * 61.57975 * 15 14 13 37 37 H 0.96997 * 120.00471 * 180.02562 * 20 19 18 38 38 H 0.97004 * 120.00136 * 0.02562 * 20 19 18 39 39 H 1.09009 * 115.54681 * 205.66219 * 23 22 21 40 40 H 1.09000 * 117.49913 * 359.97438 * 24 23 22 41 41 H 1.09005 * 117.50009 * 144.97464 * 24 23 22 42 42 H 1.08997 * 117.49745 * 107.49990 * 25 24 23 43 43 H 1.09002 * 117.49337 * 252.52451 * 25 24 23 44 44 H 1.08998 * 109.48578 * 60.64930 * 27 16 15 45 45 H 1.08998 * 109.48770 * 180.70948 * 27 16 15 46 46 H 1.09006 * 109.49010 * 296.78505 * 28 13 12 47 47 H 1.09006 * 109.48866 * 56.84576 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4404 0.7000 7 6 2.0090 -1.2033 -0.0005 8 1 1.4690 -2.1387 -0.0005 9 7 3.3799 -1.2032 0.0000 10 6 4.0539 -2.3704 -0.0011 11 8 3.4474 -3.4209 -0.0020 12 6 5.5609 -2.3702 -0.0011 13 7 6.0506 -3.7468 -0.1536 14 6 5.7077 -4.2841 -1.4778 15 6 6.1639 -5.7422 -1.5675 16 7 7.6126 -5.8149 -1.3319 17 6 8.0727 -7.1080 -1.4752 18 7 7.2272 -8.0840 -1.7881 19 6 7.6749 -9.3272 -1.9255 20 7 6.8007 -10.3444 -2.2499 21 7 8.9677 -9.5905 -1.7488 22 6 9.8054 -8.6174 -1.4367 23 6 11.2683 -8.9199 -1.2382 24 6 12.0326 -9.5189 -2.4205 25 6 11.6893 -10.3913 -1.2114 26 7 9.3628 -7.3803 -1.2935 27 6 7.9555 -5.2777 -0.0077 28 6 7.4993 -3.8195 0.0821 29 1 -0.4851 0.8400 -0.0004 30 1 3.8649 -0.3632 0.0004 31 1 5.9242 -1.9576 0.9401 32 1 5.9241 -1.7616 -0.8289 33 1 6.2084 -3.6983 -2.2487 34 1 4.6288 -4.2309 -1.6235 35 1 5.9366 -6.1340 -2.5589 36 1 5.6429 -6.3336 -0.8146 37 1 7.1281 -11.2520 -2.3497 38 1 5.8586 -10.1519 -2.3781 39 1 11.8069 -8.2303 -0.5881 40 1 11.4773 -9.6946 -3.3418 41 1 13.0740 -9.2233 -2.5484 42 1 10.9081 -11.1409 -1.3372 43 1 12.5048 -10.6692 -0.5436 44 1 7.4548 -5.8635 0.7632 45 1 9.0344 -5.3308 0.1381 46 1 8.0204 -3.2284 -0.6711 47 1 7.7266 -3.4277 1.0735 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473838022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:31:38 Heat of formation + Delta-G solvation = 101.795671 kcal Electronic energy + Delta-G solvation = -30023.175108 eV Core-core repulsion = 25857.494927 eV Total energy + Delta-G solvation = -4165.680181 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.90887 -39.64288 -38.28731 -37.63341 -36.18331 -35.02117 -33.90229 -32.74163 -31.95484 -31.65262 -30.86824 -28.87156 -26.21261 -25.51202 -24.01079 -23.46636 -22.99432 -22.67081 -21.44113 -20.03789 -19.37816 -19.05483 -18.28986 -18.12985 -16.80903 -16.30362 -16.09980 -15.89582 -15.62699 -15.15113 -15.06853 -14.88513 -14.69288 -14.62642 -14.21921 -14.06186 -13.91240 -13.51583 -13.15400 -12.62413 -12.50217 -12.44746 -12.26115 -11.95973 -11.86861 -11.66175 -11.53563 -11.24455 -11.21548 -11.01156 -10.87956 -10.86510 -10.59381 -10.38686 -9.97330 -9.79785 -9.68048 -9.53525 -9.26328 -8.85752 -8.57736 -8.17982 -8.00390 -6.30795 -3.82131 0.77002 1.04233 2.60634 2.93264 3.02934 3.07034 3.15406 3.33825 3.47171 3.74099 3.77383 3.87951 4.10569 4.22347 4.42398 4.53712 4.66108 4.69445 4.75973 4.89565 5.05643 5.16126 5.21989 5.26955 5.27542 5.37697 5.45368 5.50811 5.65267 5.67600 5.69919 5.74302 5.81133 5.83163 5.83900 5.93635 6.11602 6.17060 6.20968 6.29631 6.56927 6.84124 6.95075 7.10684 7.23098 7.31445 7.58808 8.14748 8.30480 8.60701 8.95710 9.42911 9.83947 10.82277 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.026737 B = 0.001979 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.979954 B =14146.936866 C =14936.821187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.591 5.591 10 C 0.452 3.548 11 O -0.558 6.558 12 C 0.044 3.956 13 N -0.518 5.518 14 C 0.053 3.947 15 C 0.077 3.923 16 N -0.457 5.457 17 C 0.576 3.424 18 N -0.636 5.636 19 C 0.621 3.379 20 N -0.806 5.806 21 N -0.626 5.626 22 C 0.447 3.553 23 C -0.104 4.104 24 C -0.151 4.151 25 C -0.150 4.150 26 N -0.600 5.600 27 C 0.075 3.925 28 C 0.055 3.945 29 H 0.273 0.727 30 H 0.370 0.630 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.036 0.964 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.416 0.584 38 H 0.418 0.582 39 H 0.134 0.866 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.102 0.898 44 H 0.057 0.943 45 H 0.099 0.901 46 H 0.045 0.955 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.993 -16.882 -3.636 29.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.432 4.432 8 H 0.137 0.863 9 N -0.231 5.231 10 C 0.237 3.763 11 O -0.440 6.440 12 C -0.087 4.087 13 N -0.243 5.243 14 C -0.075 4.075 15 C -0.050 4.050 16 N -0.176 5.176 17 C 0.211 3.789 18 N -0.373 5.373 19 C 0.253 3.747 20 N -0.356 5.356 21 N -0.360 5.360 22 C 0.170 3.830 23 C -0.124 4.124 24 C -0.189 4.189 25 C -0.188 4.188 26 N -0.330 5.330 27 C -0.051 4.051 28 C -0.073 4.073 29 H 0.084 0.916 30 H 0.203 0.797 31 H 0.111 0.889 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.129 0.871 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.248 0.752 38 H 0.250 0.750 39 H 0.152 0.848 40 H 0.114 0.886 41 H 0.123 0.877 42 H 0.128 0.872 43 H 0.120 0.880 44 H 0.075 0.925 45 H 0.117 0.883 46 H 0.063 0.937 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 23.265 -17.360 -3.602 29.251 hybrid contribution 0.224 1.372 -0.329 1.429 sum 23.489 -15.988 -3.930 28.684 Atomic orbital electron populations 1.69621 1.05636 1.27474 1.49440 1.25040 0.95488 0.97970 0.97693 0.86675 0.79799 0.84081 0.78856 1.19672 1.20209 1.19475 1.19420 0.79218 0.96602 1.48000 0.86269 1.42223 1.07530 1.06154 1.67190 1.19647 0.88055 0.84552 0.84020 1.90549 1.69334 1.30788 1.53318 1.21880 0.95589 0.89254 1.01975 1.61770 1.11904 1.20126 1.30527 1.22390 1.03454 0.93071 0.88536 1.22180 0.82147 0.97427 1.03235 1.58451 1.17690 1.11551 1.29953 1.20887 0.85210 0.88357 0.84397 1.68520 1.39265 0.99910 1.29592 1.19154 0.85686 0.85932 0.83917 1.41727 1.10075 1.08116 1.75684 1.68217 1.02630 1.37820 1.27316 1.21961 0.94675 0.82867 0.83501 1.20673 0.87556 0.98978 1.05185 1.22978 1.00483 1.02536 0.92944 1.23036 1.03209 0.92041 1.00491 1.68418 1.14814 1.22492 1.27241 1.22274 1.02091 0.95546 0.85194 1.22226 0.88345 0.94850 1.01913 0.91637 0.79731 0.88943 0.93217 0.94606 0.87118 0.89193 0.91333 0.75217 0.74958 0.84835 0.88556 0.87694 0.87176 0.88005 0.92491 0.88267 0.93663 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.66 13.96 55.50 0.77 -24.89 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 3 Si 0.88 19.27 27.74 -169.99 -4.71 14.55 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.36 6.52 56.52 0.37 -5.00 16 7 C -0.30 -8.51 10.16 -14.94 -0.15 -8.66 16 8 H 0.12 3.82 7.39 -52.48 -0.39 3.43 16 9 N -0.59 -13.89 5.09 -10.96 -0.06 -13.95 16 10 C 0.45 10.06 7.34 -10.98 -0.08 9.98 16 11 O -0.56 -14.62 14.26 5.54 0.08 -14.54 16 12 C 0.04 0.73 5.45 -4.97 -0.03 0.70 16 13 N -0.52 -8.24 4.40 -235.91 -1.04 -9.28 16 14 C 0.05 0.85 5.27 -3.77 -0.02 0.83 16 15 C 0.08 1.13 4.78 -3.77 -0.02 1.11 16 16 N -0.46 -6.39 4.76 -175.09 -0.83 -7.22 16 17 C 0.58 8.30 7.19 -322.13 -2.32 5.98 16 18 N -0.64 -8.85 8.89 -14.75 -0.13 -8.98 16 19 C 0.62 7.47 8.76 -322.14 -2.82 4.64 16 20 N -0.81 -6.27 9.05 29.85 0.27 -6.00 16 21 N -0.63 -7.38 9.53 -11.52 -0.11 -7.49 16 22 C 0.45 5.37 7.36 -156.58 -1.15 4.22 16 23 C -0.10 -0.88 6.26 -91.73 -0.57 -1.46 16 24 C -0.15 -1.00 10.23 -26.73 -0.27 -1.27 16 25 C -0.15 -0.97 10.03 -26.69 -0.27 -1.23 16 26 N -0.60 -8.17 9.75 -11.52 -0.11 -8.29 16 27 C 0.07 0.94 5.46 -3.77 -0.02 0.92 16 28 C 0.06 0.68 5.61 -3.77 -0.02 0.66 16 29 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.37 7.64 5.76 -40.82 -0.24 7.41 16 31 H 0.09 1.32 8.02 -51.93 -0.42 0.90 16 32 H 0.05 0.72 8.12 -51.94 -0.42 0.30 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.11 2.10 6.09 -51.93 -0.32 1.78 16 35 H 0.09 1.29 7.82 -51.93 -0.41 0.89 16 36 H 0.07 1.12 8.05 -51.93 -0.42 0.70 16 37 H 0.42 2.24 8.95 -40.82 -0.37 1.88 16 38 H 0.42 2.75 8.95 -40.82 -0.37 2.38 16 39 H 0.13 0.99 8.14 -51.92 -0.42 0.57 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.11 0.81 7.58 -51.93 -0.39 0.42 16 43 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.10 1.13 7.67 -51.93 -0.40 0.73 16 46 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.09 0.94 8.07 -51.93 -0.42 0.52 16 LS Contribution 385.34 15.07 5.81 5.81 Total: -1.00 -34.46 385.34 -14.58 -49.04 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -6.67 Total: 13.79 kcal Atomic # 6 Polarization: 25.30 SS G_CDS: -7.84 Total: 17.45 kcal Atomic # 7 Polarization: -84.86 SS G_CDS: -1.24 Total: -86.10 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.08 Total: -14.54 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -4.71 Total: 14.55 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.46 -14.58 -49.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473838022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.833 kcal (2) G-P(sol) polarization free energy of solvation -34.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds