Wall clock time and date at job start Wed Apr 1 2020 06:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86804 * 119.99601 * 2 1 4 4 H 1.48504 * 109.47005 * 270.00181 * 3 2 1 5 5 H 1.48495 * 109.47063 * 29.99830 * 3 2 1 6 6 H 1.48495 * 109.47121 * 150.00080 * 3 2 1 7 7 C 1.38950 * 120.00499 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99473 * 359.97438 * 7 2 1 9 9 N 1.37091 * 120.00027 * 180.02562 * 7 2 1 10 10 C 1.34778 * 119.99737 * 180.02562 * 9 7 2 11 11 O 1.21300 * 120.00112 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99789 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.46991 * 186.27144 * 12 10 9 14 14 C 1.46959 * 110.99826 * 66.36980 * 13 12 10 15 15 C 1.53045 * 109.36410 * 183.18651 * 14 13 12 16 16 N 1.46959 * 109.36547 * 301.59668 * 15 14 13 17 17 C 1.37996 * 111.00040 * 183.18737 * 16 15 14 18 18 N 1.32870 * 120.04184 * 0.02562 * 17 16 15 19 19 C 1.32846 * 119.82086 * 179.97438 * 18 17 16 20 20 N 1.37995 * 120.04168 * 179.97438 * 19 18 17 21 21 N 1.33115 * 119.91509 * 0.02562 * 19 18 17 22 22 C 1.32138 * 120.08780 * 0.02562 * 21 19 18 23 23 C 1.50698 * 119.91127 * 180.02562 * 22 21 19 24 24 C 1.53001 * 117.50034 * 59.99908 * 23 22 21 25 25 C 1.53003 * 60.03070 * 252.47282 * 24 23 22 26 26 N 1.32166 * 120.17675 * 0.26662 * 22 21 19 27 27 C 1.46963 * 110.87544 * 59.32381 * 16 15 14 28 28 C 1.46953 * 111.00064 * 190.16923 * 13 12 10 29 29 H 0.96998 * 120.00459 * 0.02562 * 1 2 3 30 30 H 0.96996 * 120.00473 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47073 * 66.27721 * 12 10 9 32 32 H 1.08989 * 109.47203 * 306.27233 * 12 10 9 33 33 H 1.09004 * 109.49005 * 63.22078 * 14 13 12 34 34 H 1.08998 * 109.49067 * 303.15609 * 14 13 12 35 35 H 1.09006 * 109.48905 * 181.63227 * 15 14 13 36 36 H 1.09000 * 109.51064 * 61.57975 * 15 14 13 37 37 H 0.96997 * 120.00471 * 180.02562 * 20 19 18 38 38 H 0.97004 * 120.00136 * 0.02562 * 20 19 18 39 39 H 1.09009 * 115.54681 * 205.66219 * 23 22 21 40 40 H 1.09000 * 117.49913 * 359.97438 * 24 23 22 41 41 H 1.09005 * 117.50009 * 144.97464 * 24 23 22 42 42 H 1.08997 * 117.49745 * 107.49990 * 25 24 23 43 43 H 1.09002 * 117.49337 * 252.52451 * 25 24 23 44 44 H 1.08998 * 109.48578 * 60.64930 * 27 16 15 45 45 H 1.08998 * 109.48770 * 180.70948 * 27 16 15 46 46 H 1.09006 * 109.49010 * 296.78505 * 28 13 12 47 47 H 1.09006 * 109.48866 * 56.84576 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4404 0.7000 7 6 2.0090 -1.2033 -0.0005 8 1 1.4690 -2.1387 -0.0005 9 7 3.3799 -1.2032 0.0000 10 6 4.0539 -2.3704 -0.0011 11 8 3.4474 -3.4209 -0.0020 12 6 5.5609 -2.3702 -0.0011 13 7 6.0506 -3.7468 -0.1536 14 6 5.7077 -4.2841 -1.4778 15 6 6.1639 -5.7422 -1.5675 16 7 7.6126 -5.8149 -1.3319 17 6 8.0727 -7.1080 -1.4752 18 7 7.2272 -8.0840 -1.7881 19 6 7.6749 -9.3272 -1.9255 20 7 6.8007 -10.3444 -2.2499 21 7 8.9677 -9.5905 -1.7488 22 6 9.8054 -8.6174 -1.4367 23 6 11.2683 -8.9199 -1.2382 24 6 12.0326 -9.5189 -2.4205 25 6 11.6893 -10.3913 -1.2114 26 7 9.3628 -7.3803 -1.2935 27 6 7.9555 -5.2777 -0.0077 28 6 7.4993 -3.8195 0.0821 29 1 -0.4851 0.8400 -0.0004 30 1 3.8649 -0.3632 0.0004 31 1 5.9242 -1.9576 0.9401 32 1 5.9241 -1.7616 -0.8289 33 1 6.2084 -3.6983 -2.2487 34 1 4.6288 -4.2309 -1.6235 35 1 5.9366 -6.1340 -2.5589 36 1 5.6429 -6.3336 -0.8146 37 1 7.1281 -11.2520 -2.3497 38 1 5.8586 -10.1519 -2.3781 39 1 11.8069 -8.2303 -0.5881 40 1 11.4773 -9.6946 -3.3418 41 1 13.0740 -9.2233 -2.5484 42 1 10.9081 -11.1409 -1.3372 43 1 12.5048 -10.6692 -0.5436 44 1 7.4548 -5.8635 0.7632 45 1 9.0344 -5.3308 0.1381 46 1 8.0204 -3.2284 -0.6711 47 1 7.7266 -3.4277 1.0735 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473838022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:31:36 Heat of formation + Delta-G solvation = 77.560939 kcal Electronic energy + Delta-G solvation = -30024.226005 eV Core-core repulsion = 25857.494927 eV Total energy + Delta-G solvation = -4166.731078 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.84575 -40.89846 -39.83871 -38.33786 -37.27664 -36.08612 -35.73611 -33.79904 -33.66117 -32.85366 -31.94502 -30.18537 -27.52466 -26.66633 -25.40901 -24.64277 -24.03399 -23.19897 -22.24497 -21.27010 -21.08241 -20.25093 -19.96929 -19.02174 -17.80766 -17.57573 -17.14391 -16.99092 -16.79238 -16.40290 -16.32577 -16.02081 -15.79894 -15.62959 -15.41505 -15.20172 -15.06339 -15.04997 -14.76963 -14.30598 -13.89754 -13.41879 -13.32128 -13.12315 -13.00261 -12.75532 -12.53413 -12.40759 -12.36491 -12.31513 -12.20471 -12.04458 -11.96159 -11.44822 -11.42677 -11.08024 -10.74165 -10.65057 -10.37260 -10.21211 -10.14386 -9.85493 -9.26406 -8.39170 -5.99622 -0.17594 0.10393 1.31809 1.37110 1.45955 1.74513 1.98869 2.02525 2.24779 2.54590 2.57408 2.67046 3.02252 3.17324 3.18628 3.34275 3.66445 3.73466 3.90550 3.94642 4.10258 4.11559 4.15653 4.19256 4.24847 4.31205 4.42261 4.50889 4.57016 4.72081 4.78316 4.81356 4.85010 4.88312 4.96680 5.05174 5.15062 5.18825 5.33341 5.34234 5.54525 5.64734 5.80862 5.92092 6.00084 6.08769 6.12258 6.56234 6.62386 6.91315 7.39210 7.42953 8.00614 8.78458 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.026737 B = 0.001979 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.979954 B =14146.936866 C =14936.821187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.017 4.017 3 Si 0.964 3.036 4 H -0.258 1.258 5 H -0.277 1.277 6 H -0.229 1.229 7 C -0.325 4.325 8 H 0.055 0.945 9 N -0.592 5.592 10 C 0.451 3.549 11 O -0.606 6.606 12 C 0.057 3.943 13 N -0.541 5.541 14 C 0.062 3.938 15 C 0.093 3.907 16 N -0.457 5.457 17 C 0.561 3.439 18 N -0.658 5.658 19 C 0.606 3.394 20 N -0.786 5.786 21 N -0.626 5.626 22 C 0.436 3.564 23 C -0.123 4.123 24 C -0.140 4.140 25 C -0.136 4.136 26 N -0.611 5.611 27 C 0.078 3.922 28 C 0.061 3.939 29 H 0.278 0.722 30 H 0.389 0.611 31 H 0.127 0.873 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.044 0.956 37 H 0.429 0.571 38 H 0.425 0.575 39 H 0.145 0.855 40 H 0.083 0.917 41 H 0.129 0.871 42 H 0.099 0.901 43 H 0.126 0.874 44 H 0.041 0.959 45 H 0.115 0.885 46 H 0.061 0.939 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.368 -15.672 -3.442 32.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.215 4.215 3 Si 0.784 3.216 4 H -0.183 1.183 5 H -0.202 1.202 6 H -0.152 1.152 7 C -0.454 4.454 8 H 0.073 0.927 9 N -0.234 5.234 10 C 0.239 3.761 11 O -0.489 6.489 12 C -0.074 4.074 13 N -0.267 5.267 14 C -0.067 4.067 15 C -0.035 4.035 16 N -0.177 5.177 17 C 0.196 3.804 18 N -0.396 5.396 19 C 0.238 3.762 20 N -0.337 5.337 21 N -0.359 5.359 22 C 0.160 3.840 23 C -0.143 4.143 24 C -0.179 4.179 25 C -0.174 4.174 26 N -0.341 5.341 27 C -0.047 4.047 28 C -0.066 4.066 29 H 0.088 0.912 30 H 0.225 0.775 31 H 0.145 0.855 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.063 0.937 37 H 0.263 0.737 38 H 0.258 0.742 39 H 0.162 0.838 40 H 0.102 0.898 41 H 0.147 0.853 42 H 0.117 0.883 43 H 0.144 0.856 44 H 0.060 0.940 45 H 0.133 0.867 46 H 0.079 0.921 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 27.672 -16.214 -3.413 32.254 hybrid contribution -1.178 0.739 -0.411 1.450 sum 26.495 -15.474 -3.824 30.920 Atomic orbital electron populations 1.69809 1.08158 1.29156 1.50571 1.26117 0.96461 1.02732 0.96213 0.85369 0.79586 0.76739 0.79857 1.18297 1.20203 1.15215 1.18982 0.81515 0.94832 1.50072 0.92717 1.42038 1.05762 1.07600 1.68042 1.20908 0.90832 0.83301 0.81100 1.90541 1.71270 1.32628 1.54500 1.21822 0.90244 0.90317 1.05013 1.61691 1.14593 1.20061 1.30331 1.22163 1.01134 0.93961 0.89409 1.21881 0.82961 0.96327 1.02285 1.58505 1.16511 1.11888 1.30755 1.21058 0.85839 0.88581 0.84918 1.68516 1.39741 1.00710 1.30593 1.19551 0.86446 0.86180 0.84061 1.41728 1.09973 1.07953 1.74023 1.68341 1.02435 1.37624 1.27530 1.22729 0.96191 0.82481 0.82606 1.20877 0.85762 1.00711 1.06988 1.23059 1.01154 1.01659 0.92013 1.23108 1.03278 0.90407 1.00627 1.68469 1.14220 1.23348 1.28100 1.22319 1.02762 0.95549 0.84117 1.22320 0.85731 0.94753 1.03830 0.91246 0.77512 0.85490 0.90064 0.93334 0.91021 0.89442 0.93709 0.73733 0.74223 0.83758 0.89819 0.85328 0.88272 0.85563 0.94033 0.86715 0.92082 0.86713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.63 13.96 21.66 0.30 -56.32 16 2 C -0.02 -0.94 5.50 84.93 0.47 -0.47 16 3 Si 0.96 38.65 27.74 68.60 1.90 40.55 16 4 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 5 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.23 -7.63 6.52 99.48 0.65 -6.99 16 7 C -0.32 -18.97 10.16 84.04 0.85 -18.11 16 8 H 0.05 3.82 7.39 -2.91 -0.02 3.80 16 9 N -0.59 -27.63 5.09 -306.97 -1.56 -29.19 16 10 C 0.45 20.10 7.34 87.66 0.64 20.75 16 11 O -0.61 -33.27 14.26 -3.09 -0.04 -33.32 16 12 C 0.06 1.70 5.45 85.56 0.47 2.17 16 13 N -0.54 -16.36 4.40 -900.29 -3.96 -20.33 16 14 C 0.06 1.98 5.27 86.31 0.45 2.43 16 15 C 0.09 2.82 4.78 86.31 0.41 3.23 16 16 N -0.46 -12.58 4.76 -707.85 -3.37 -15.96 16 17 C 0.56 16.17 7.19 261.25 1.88 18.05 16 18 N -0.66 -18.65 8.89 -200.59 -1.78 -20.43 16 19 C 0.61 14.54 8.76 261.25 2.29 16.83 16 20 N -0.79 -11.95 9.05 -59.46 -0.54 -12.49 16 21 N -0.63 -14.46 9.53 -190.35 -1.81 -16.28 16 22 C 0.44 10.16 7.36 138.53 1.02 11.18 16 23 C -0.12 -1.88 6.26 -11.52 -0.07 -1.96 16 24 C -0.14 -1.56 10.23 30.60 0.31 -1.24 16 25 C -0.14 -1.45 10.03 30.62 0.31 -1.15 16 26 N -0.61 -16.28 9.75 -190.35 -1.86 -18.13 16 27 C 0.08 1.85 5.46 86.31 0.47 2.32 16 28 C 0.06 1.32 5.61 86.31 0.48 1.80 16 29 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 30 H 0.39 14.95 5.76 -92.71 -0.53 14.41 16 31 H 0.13 3.01 8.02 -2.39 -0.02 2.99 16 32 H 0.08 2.00 8.12 -2.39 -0.02 1.98 16 33 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.07 2.87 6.09 -2.39 -0.01 2.86 16 35 H 0.09 2.63 7.82 -2.38 -0.02 2.62 16 36 H 0.04 1.55 8.05 -2.39 -0.02 1.53 16 37 H 0.43 4.26 8.95 -92.71 -0.83 3.43 16 38 H 0.42 5.52 8.95 -92.71 -0.83 4.69 16 39 H 0.14 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.13 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.10 1.30 7.58 -2.39 -0.02 1.29 16 43 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.11 2.36 7.67 -2.39 -0.02 2.35 16 46 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 47 H 0.11 1.91 8.07 -2.38 -0.02 1.89 16 Total: -1.00 -82.06 385.34 -3.95 -86.01 By element: Atomic # 1 Polarization: 41.27 SS G_CDS: -1.21 Total: 40.07 kcal Atomic # 6 Polarization: 45.83 SS G_CDS: 9.99 Total: 55.81 kcal Atomic # 7 Polarization: -174.54 SS G_CDS: -14.59 Total: -189.12 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -0.04 Total: -33.32 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 1.90 Total: 40.55 kcal Total: -82.06 -3.95 -86.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473838022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.566 kcal (2) G-P(sol) polarization free energy of solvation -82.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds