Wall clock time and date at job start Wed Apr 1 2020 06:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36942 * 119.99782 * 2 1 4 4 H 1.07995 * 119.99887 * 204.76346 * 3 2 1 5 5 C 1.38815 * 119.99745 * 24.76528 * 3 2 1 6 6 N 1.31616 * 120.00013 * 6.26816 * 5 3 2 7 7 Si 1.86798 * 119.99860 * 186.26278 * 5 3 2 8 8 H 1.48501 * 109.46992 * 90.00019 * 7 5 3 9 9 H 1.48489 * 109.47185 * 210.00415 * 7 5 3 10 10 H 1.48503 * 109.47151 * 330.00396 * 7 5 3 11 11 C 1.46495 * 120.00151 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.47120 * 269.99770 * 11 2 1 13 13 O 1.42898 * 109.47107 * 64.99960 * 12 11 2 14 14 C 1.42904 * 114.00378 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47394 * 179.97438 * 14 13 12 16 16 N 1.46503 * 109.46925 * 64.99951 * 15 14 13 17 17 C 1.46494 * 120.00171 * 269.99921 * 16 15 14 18 18 C 1.34777 * 119.99633 * 89.99855 * 16 15 14 19 19 O 1.21755 * 120.00541 * 0.22190 * 18 16 15 20 20 C 1.46190 * 119.99833 * 180.22113 * 18 16 15 21 21 C 1.38728 * 126.76511 * 348.27815 * 20 18 16 22 22 N 1.32277 * 108.17963 * 180.02562 * 21 20 18 23 23 C 1.33130 * 109.71657 * 359.94730 * 22 21 20 24 24 C 1.40624 * 132.29196 * 180.02562 * 23 22 21 25 25 C 1.36304 * 119.22669 * 179.97438 * 24 23 22 26 26 C 1.39876 * 120.11912 * 0.02562 * 25 24 23 27 27 N 1.30794 * 120.78004 * 0.02562 * 26 25 24 28 28 N 1.36651 * 108.62629 * 0.02562 * 23 22 21 29 29 H 1.09001 * 109.47179 * 275.03429 * 1 2 3 30 30 H 1.08996 * 109.47015 * 35.04171 * 1 2 3 31 31 H 1.09000 * 109.46951 * 155.03911 * 1 2 3 32 32 H 0.97000 * 120.00131 * 179.97438 * 6 5 3 33 33 H 1.09000 * 109.47338 * 149.99997 * 11 2 1 34 34 H 1.08998 * 109.47531 * 29.99910 * 11 2 1 35 35 H 1.08996 * 109.47174 * 305.00500 * 12 11 2 36 36 H 1.08999 * 109.47309 * 185.00114 * 12 11 2 37 37 H 1.08996 * 109.46956 * 59.99928 * 14 13 12 38 38 H 1.08996 * 109.46602 * 300.00453 * 14 13 12 39 39 H 1.09004 * 109.47154 * 305.00291 * 15 14 13 40 40 H 1.08998 * 109.46840 * 185.00050 * 15 14 13 41 41 H 1.08995 * 109.47255 * 263.26108 * 17 16 15 42 42 H 1.09005 * 109.47519 * 23.26424 * 17 16 15 43 43 H 1.09004 * 109.47282 * 143.26431 * 17 16 15 44 44 H 1.08001 * 125.90851 * 359.93081 * 21 20 18 45 45 H 1.08002 * 120.38618 * 0.25003 * 24 23 22 46 46 H 1.08003 * 119.94556 * 180.02562 * 25 24 23 47 47 H 1.08007 * 119.61072 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1552 1.2290 -0.3918 5 6 1.5513 2.3328 0.5036 6 7 0.3767 2.2578 1.0926 7 14 2.4132 3.9825 0.3454 8 1 2.0105 4.6312 -0.9283 9 1 2.0307 4.8522 1.4865 10 1 3.8837 3.7754 0.3520 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7109 1.4417 13 8 1.2062 -1.9944 2.0805 14 6 1.3325 -2.4178 3.4395 15 6 -0.0566 -2.6912 4.0198 16 7 -0.6656 -3.8228 3.3163 17 6 -1.4798 -3.5897 2.1209 18 6 -0.4768 -5.0782 3.7689 19 8 0.1965 -5.2716 4.7647 20 6 -1.0806 -6.2077 3.0641 21 6 -2.0436 -6.1458 2.0675 22 7 -2.3266 -7.3815 1.6896 23 6 -1.5941 -8.2443 2.3906 24 6 -1.5146 -9.6482 2.3765 25 6 -0.6530 -10.2746 3.2270 26 6 0.1398 -9.5241 4.1015 27 7 0.0671 -8.2183 4.1173 28 7 -0.8048 -7.5430 3.2580 29 1 -0.3633 0.0902 1.0237 30 1 -0.3633 0.8414 -0.5900 31 1 -0.3633 -0.9317 -0.4337 32 1 -0.0413 3.0591 1.4449 33 1 3.1500 -1.1381 -0.5143 34 1 1.6085 -2.0281 -0.5147 35 1 2.9642 -0.9139 1.9811 36 1 3.0734 -2.6069 1.4427 37 1 1.8207 -1.6351 4.0201 38 1 1.9302 -3.3283 3.4822 39 1 -0.6823 -1.8073 3.8964 40 1 0.0328 -2.9280 5.0800 41 1 -2.5336 -3.5653 2.3982 42 1 -1.2003 -2.6370 1.6709 43 1 -1.3112 -4.3934 1.4041 44 1 -2.4869 -5.2447 1.6701 45 1 -2.1258 -10.2232 1.6967 46 1 -0.5823 -11.3523 3.2257 47 1 0.8194 -10.0289 4.7722 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479679579.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:12:33 Heat of formation + Delta-G solvation = 99.553031 kcal Electronic energy + Delta-G solvation = -30690.162916 eV Core-core repulsion = 26492.092736 eV Total energy + Delta-G solvation = -4198.070180 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.90537 -39.76715 -38.30901 -37.42683 -35.70929 -34.96679 -33.97895 -31.84209 -31.47833 -30.80431 -29.13136 -27.94980 -26.82439 -25.71155 -25.30461 -24.04093 -22.95861 -22.63159 -22.15490 -20.29944 -20.08461 -18.02288 -17.87504 -17.36126 -16.75291 -16.60981 -16.22964 -16.05576 -15.63732 -15.33245 -15.05956 -14.66247 -14.53550 -14.06274 -13.85860 -13.74475 -13.36471 -13.31055 -13.00594 -12.96949 -12.95581 -12.26468 -12.13304 -11.80089 -11.57973 -11.51702 -11.32889 -11.25351 -10.92889 -10.79548 -10.72851 -10.46632 -10.41006 -10.03974 -9.93520 -9.88546 -9.81244 -9.77645 -8.89327 -8.71328 -8.51360 -8.46692 -6.62816 -5.64256 -3.12069 -0.02323 0.51118 1.37183 1.98532 2.87413 2.89325 3.17515 3.40556 3.46795 3.47803 3.61936 3.75544 4.06907 4.30314 4.39251 4.45950 4.55301 4.75083 4.80471 5.10869 5.18842 5.27421 5.30724 5.32270 5.43981 5.47549 5.53456 5.63205 5.73218 5.78319 5.81425 5.97645 5.99913 6.02347 6.16364 6.24431 6.30726 6.52767 6.60873 6.82203 6.96187 7.09887 7.24822 7.31593 7.54351 7.84681 7.90469 7.99226 8.10300 8.49220 9.33548 9.96038 10.47127 11.39531 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022888 B = 0.002242 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.036064 B =12484.154963 C =12690.756001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.597 5.597 3 C -0.254 4.254 4 H 0.065 0.935 5 C 0.003 3.997 6 N -0.905 5.905 7 Si 0.902 3.098 8 H -0.289 1.289 9 H -0.291 1.291 10 H -0.281 1.281 11 C 0.154 3.846 12 C 0.045 3.955 13 O -0.366 6.366 14 C 0.048 3.952 15 C 0.125 3.875 16 N -0.588 5.588 17 C 0.056 3.944 18 C 0.587 3.413 19 O -0.531 6.531 20 C -0.051 4.051 21 C 0.061 3.939 22 N -0.463 5.463 23 C 0.176 3.824 24 C -0.009 4.009 25 C -0.172 4.172 26 C 0.123 3.877 27 N -0.234 5.234 28 N -0.238 5.238 29 H 0.033 0.967 30 H 0.036 0.964 31 H -0.008 1.008 32 H 0.250 0.750 33 H 0.056 0.944 34 H 0.042 0.958 35 H 0.047 0.953 36 H 0.021 0.979 37 H 0.055 0.945 38 H 0.040 0.960 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.062 0.938 42 H 0.100 0.900 43 H 0.080 0.920 44 H 0.218 0.782 45 H 0.165 0.835 46 H 0.159 0.841 47 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.886 -25.160 4.715 26.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.320 5.320 3 C -0.384 4.384 4 H 0.083 0.917 5 C -0.195 4.195 6 N -0.550 5.550 7 Si 0.732 3.268 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.026 3.974 12 C -0.035 4.035 13 O -0.285 6.285 14 C -0.031 4.031 15 C 0.003 3.997 16 N -0.321 5.321 17 C -0.087 4.087 18 C 0.374 3.626 19 O -0.409 6.409 20 C -0.172 4.172 21 C -0.099 4.099 22 N -0.183 5.183 23 C -0.068 4.068 24 C -0.037 4.037 25 C -0.198 4.198 26 C -0.070 4.070 27 N -0.044 5.044 28 N -0.008 5.008 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.010 0.990 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.039 0.961 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.080 0.920 42 H 0.119 0.881 43 H 0.098 0.902 44 H 0.234 0.766 45 H 0.183 0.817 46 H 0.177 0.823 47 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -4.898 -24.503 5.176 25.518 hybrid contribution 0.994 0.481 0.358 1.161 sum -3.904 -24.022 5.534 24.959 Atomic orbital electron populations 1.20711 0.82210 0.94553 0.99388 1.43849 1.02144 1.00167 1.85813 1.19201 0.99178 0.86160 1.33880 0.91708 1.25088 0.97462 0.98487 0.98455 1.70064 1.16228 1.27185 1.41516 0.86294 0.79038 0.84305 0.77113 1.21572 1.21772 1.20649 1.20877 0.96330 0.88803 0.91391 1.23442 0.85299 0.96671 0.98046 1.87916 1.30250 1.87247 1.23100 1.22762 0.96636 0.98054 0.85629 1.21623 0.93774 0.87943 0.96325 1.47365 1.50880 1.04992 1.28823 1.22567 0.94095 1.05209 0.86791 1.16523 0.80560 0.81692 0.83778 1.90866 1.39824 1.84569 1.25608 1.20904 1.07596 0.81761 1.06907 1.24376 0.95279 0.96612 0.93658 1.70490 1.23140 1.00119 1.24584 1.21336 0.96014 0.94895 0.94602 1.20640 0.96751 0.88825 0.97473 1.21593 0.97940 1.02709 0.97552 1.24318 0.96711 0.89285 0.96657 1.76161 1.08436 1.10142 1.09693 1.46585 1.24584 1.06391 1.23219 0.94853 0.94524 0.98969 0.93936 0.92570 0.93920 0.93472 0.96091 0.92721 0.94142 0.88633 0.88736 0.91998 0.88120 0.90196 0.76577 0.81723 0.82289 0.78145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 4.35 8.60 59.85 0.51 4.87 16 2 N -0.60 -15.11 2.89 -181.12 -0.52 -15.63 16 3 C -0.25 -7.01 9.67 -15.06 -0.15 -7.15 16 4 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 5 C 0.00 0.09 5.23 -17.43 -0.09 0.00 16 6 N -0.90 -26.27 10.47 55.49 0.58 -25.69 16 7 Si 0.90 21.95 29.56 -169.99 -5.02 16.92 16 8 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 9 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 C 0.15 3.22 6.11 -4.04 -0.02 3.19 16 12 C 0.04 0.88 6.28 37.16 0.23 1.11 16 13 O -0.37 -7.05 8.86 -35.23 -0.31 -7.36 16 14 C 0.05 0.79 6.28 37.16 0.23 1.02 16 15 C 0.13 1.82 5.78 -4.04 -0.02 1.80 16 16 N -0.59 -8.30 2.84 -183.30 -0.52 -8.82 16 17 C 0.06 0.64 8.47 59.84 0.51 1.15 16 18 C 0.59 9.31 7.63 -13.07 -0.10 9.21 16 19 O -0.53 -9.99 16.46 5.14 0.08 -9.91 16 20 C -0.05 -0.73 6.93 -81.85 -0.57 -1.30 16 21 C 0.06 0.74 9.75 -17.18 -0.17 0.58 16 22 N -0.46 -5.90 11.25 -12.24 -0.14 -6.04 16 23 C 0.18 2.09 7.85 -156.07 -1.23 0.87 16 24 C -0.01 -0.07 10.11 -39.38 -0.40 -0.46 16 25 C -0.17 -0.85 10.03 -39.67 -0.40 -1.24 16 26 C 0.12 0.85 11.30 -17.38 -0.20 0.66 16 27 N -0.23 -2.95 11.71 30.62 0.36 -2.60 16 28 N -0.24 -3.32 4.05 -8.68 -0.04 -3.35 16 29 H 0.03 0.89 7.34 -51.93 -0.38 0.50 16 30 H 0.04 0.98 7.27 -51.93 -0.38 0.60 16 31 H -0.01 -0.18 7.84 -51.93 -0.41 -0.59 16 32 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.06 1.12 8.04 -51.93 -0.42 0.70 16 34 H 0.04 0.83 7.86 -51.93 -0.41 0.42 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 1.35 8.07 -51.93 -0.42 0.93 16 40 H 0.09 1.33 7.42 -51.93 -0.39 0.94 16 41 H 0.06 0.55 7.53 -51.93 -0.39 0.16 16 42 H 0.10 1.35 7.26 -51.93 -0.38 0.98 16 43 H 0.08 0.85 5.01 -51.93 -0.26 0.59 16 44 H 0.22 1.97 4.52 -52.49 -0.24 1.74 16 45 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 46 H 0.16 0.12 8.06 -52.48 -0.42 -0.30 16 47 H 0.20 0.51 8.06 -52.48 -0.42 0.08 16 LS Contribution 390.48 15.07 5.88 5.88 Total: -1.00 -37.50 390.48 -8.06 -45.56 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -6.57 Total: -3.27 kcal Atomic # 6 Polarization: 16.15 SS G_CDS: -1.85 Total: 14.30 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: -0.28 Total: -62.12 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.23 Total: -17.27 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.50 -8.06 -45.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479679579.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.114 kcal (2) G-P(sol) polarization free energy of solvation -37.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds