Wall clock time and date at job start Wed Apr 1 2020 06:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36942 * 119.99782 * 2 1 4 4 H 1.07995 * 119.99887 * 204.76346 * 3 2 1 5 5 C 1.38815 * 119.99745 * 24.76528 * 3 2 1 6 6 N 1.31616 * 120.00013 * 6.26816 * 5 3 2 7 7 Si 1.86798 * 119.99860 * 186.26278 * 5 3 2 8 8 H 1.48501 * 109.46992 * 90.00019 * 7 5 3 9 9 H 1.48489 * 109.47185 * 210.00415 * 7 5 3 10 10 H 1.48503 * 109.47151 * 330.00396 * 7 5 3 11 11 C 1.46495 * 120.00151 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.47120 * 269.99770 * 11 2 1 13 13 O 1.42898 * 109.47107 * 64.99960 * 12 11 2 14 14 C 1.42904 * 114.00378 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47394 * 179.97438 * 14 13 12 16 16 N 1.46503 * 109.46925 * 64.99951 * 15 14 13 17 17 C 1.46494 * 120.00171 * 269.99921 * 16 15 14 18 18 C 1.34777 * 119.99633 * 89.99855 * 16 15 14 19 19 O 1.21755 * 120.00541 * 0.22190 * 18 16 15 20 20 C 1.46190 * 119.99833 * 180.22113 * 18 16 15 21 21 C 1.38728 * 126.76511 * 348.27815 * 20 18 16 22 22 N 1.32277 * 108.17963 * 180.02562 * 21 20 18 23 23 C 1.33130 * 109.71657 * 359.94730 * 22 21 20 24 24 C 1.40624 * 132.29196 * 180.02562 * 23 22 21 25 25 C 1.36304 * 119.22669 * 179.97438 * 24 23 22 26 26 C 1.39876 * 120.11912 * 0.02562 * 25 24 23 27 27 N 1.30794 * 120.78004 * 0.02562 * 26 25 24 28 28 N 1.36651 * 108.62629 * 0.02562 * 23 22 21 29 29 H 1.09001 * 109.47179 * 275.03429 * 1 2 3 30 30 H 1.08996 * 109.47015 * 35.04171 * 1 2 3 31 31 H 1.09000 * 109.46951 * 155.03911 * 1 2 3 32 32 H 0.97000 * 120.00131 * 179.97438 * 6 5 3 33 33 H 1.09000 * 109.47338 * 149.99997 * 11 2 1 34 34 H 1.08998 * 109.47531 * 29.99910 * 11 2 1 35 35 H 1.08996 * 109.47174 * 305.00500 * 12 11 2 36 36 H 1.08999 * 109.47309 * 185.00114 * 12 11 2 37 37 H 1.08996 * 109.46956 * 59.99928 * 14 13 12 38 38 H 1.08996 * 109.46602 * 300.00453 * 14 13 12 39 39 H 1.09004 * 109.47154 * 305.00291 * 15 14 13 40 40 H 1.08998 * 109.46840 * 185.00050 * 15 14 13 41 41 H 1.08995 * 109.47255 * 263.26108 * 17 16 15 42 42 H 1.09005 * 109.47519 * 23.26424 * 17 16 15 43 43 H 1.09004 * 109.47282 * 143.26431 * 17 16 15 44 44 H 1.08001 * 125.90851 * 359.93081 * 21 20 18 45 45 H 1.08002 * 120.38618 * 0.25003 * 24 23 22 46 46 H 1.08003 * 119.94556 * 180.02562 * 25 24 23 47 47 H 1.08007 * 119.61072 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1552 1.2290 -0.3918 5 6 1.5513 2.3328 0.5036 6 7 0.3767 2.2578 1.0926 7 14 2.4132 3.9825 0.3454 8 1 2.0105 4.6312 -0.9283 9 1 2.0307 4.8522 1.4865 10 1 3.8837 3.7754 0.3520 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7109 1.4417 13 8 1.2062 -1.9944 2.0805 14 6 1.3325 -2.4178 3.4395 15 6 -0.0566 -2.6912 4.0198 16 7 -0.6656 -3.8228 3.3163 17 6 -1.4798 -3.5897 2.1209 18 6 -0.4768 -5.0782 3.7689 19 8 0.1965 -5.2716 4.7647 20 6 -1.0806 -6.2077 3.0641 21 6 -2.0436 -6.1458 2.0675 22 7 -2.3266 -7.3815 1.6896 23 6 -1.5941 -8.2443 2.3906 24 6 -1.5146 -9.6482 2.3765 25 6 -0.6530 -10.2746 3.2270 26 6 0.1398 -9.5241 4.1015 27 7 0.0671 -8.2183 4.1173 28 7 -0.8048 -7.5430 3.2580 29 1 -0.3633 0.0902 1.0237 30 1 -0.3633 0.8414 -0.5900 31 1 -0.3633 -0.9317 -0.4337 32 1 -0.0413 3.0591 1.4449 33 1 3.1500 -1.1381 -0.5143 34 1 1.6085 -2.0281 -0.5147 35 1 2.9642 -0.9139 1.9811 36 1 3.0734 -2.6069 1.4427 37 1 1.8207 -1.6351 4.0201 38 1 1.9302 -3.3283 3.4822 39 1 -0.6823 -1.8073 3.8964 40 1 0.0328 -2.9280 5.0800 41 1 -2.5336 -3.5653 2.3982 42 1 -1.2003 -2.6370 1.6709 43 1 -1.3112 -4.3934 1.4041 44 1 -2.4869 -5.2447 1.6701 45 1 -2.1258 -10.2232 1.6967 46 1 -0.5823 -11.3523 3.2257 47 1 0.8194 -10.0289 4.7722 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479679579.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:12:30 Heat of formation + Delta-G solvation = 73.589420 kcal Electronic energy + Delta-G solvation = -30691.288783 eV Core-core repulsion = 26492.092736 eV Total energy + Delta-G solvation = -4199.196047 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.71672 -40.87753 -39.09823 -38.89464 -37.24557 -36.49984 -34.67419 -33.50386 -32.52812 -31.96775 -30.34195 -29.42792 -27.90162 -27.77350 -26.11164 -24.95569 -24.71485 -23.66287 -23.09062 -22.11897 -21.09136 -18.97944 -18.75158 -18.52585 -18.25290 -17.56389 -17.42931 -17.26198 -16.88400 -16.51903 -16.41659 -16.22584 -15.48446 -15.30062 -15.23954 -15.11922 -14.65058 -14.52538 -14.14833 -13.91390 -13.83135 -13.77182 -13.50725 -13.13824 -12.97227 -12.77506 -12.69799 -12.59598 -12.45828 -12.30940 -12.18626 -12.14091 -11.99014 -11.77750 -11.68059 -11.25587 -11.00925 -10.62591 -10.59275 -10.41049 -9.82199 -9.37241 -8.67526 -7.75209 -5.24965 -0.60158 -0.27368 0.60832 1.17011 1.48015 1.48293 1.56816 1.83913 2.09336 2.23487 2.53652 2.87952 2.93605 3.04830 3.37400 3.51387 3.64105 3.78986 3.85414 4.02724 4.07882 4.12554 4.21965 4.25904 4.38071 4.46047 4.51574 4.53366 4.59549 4.63282 4.65116 4.80049 4.80817 4.84062 4.92603 5.01937 5.04637 5.12437 5.17483 5.31995 5.40872 5.46759 5.70380 5.93248 6.19864 6.38474 6.39621 6.42409 6.43389 6.97139 7.23757 7.95522 8.40779 9.26954 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022888 B = 0.002242 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.036064 B =12484.154963 C =12690.756001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.194 3.806 2 N -0.613 5.613 3 C -0.262 4.262 4 H 0.069 0.931 5 C -0.051 4.051 6 N -0.932 5.932 7 Si 0.965 3.035 8 H -0.286 1.286 9 H -0.297 1.297 10 H -0.271 1.271 11 C 0.151 3.849 12 C 0.053 3.947 13 O -0.378 6.378 14 C 0.052 3.948 15 C 0.130 3.870 16 N -0.587 5.587 17 C 0.056 3.944 18 C 0.586 3.414 19 O -0.574 6.574 20 C -0.097 4.097 21 C 0.073 3.927 22 N -0.489 5.489 23 C 0.174 3.826 24 C -0.030 4.030 25 C -0.137 4.137 26 C 0.133 3.867 27 N -0.298 5.298 28 N -0.255 5.255 29 H 0.009 0.991 30 H 0.008 0.992 31 H 0.022 0.978 32 H 0.245 0.755 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.022 0.978 36 H 0.047 0.953 37 H 0.052 0.948 38 H 0.035 0.965 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.239 0.761 45 H 0.197 0.803 46 H 0.215 0.785 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.676 -28.204 4.070 28.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.336 5.336 3 C -0.393 4.393 4 H 0.086 0.914 5 C -0.246 4.246 6 N -0.579 5.579 7 Si 0.794 3.206 8 H -0.213 1.213 9 H -0.223 1.223 10 H -0.196 1.196 11 C 0.025 3.975 12 C -0.027 4.027 13 O -0.297 6.297 14 C -0.026 4.026 15 C 0.008 3.992 16 N -0.318 5.318 17 C -0.085 4.085 18 C 0.376 3.624 19 O -0.455 6.455 20 C -0.217 4.217 21 C -0.088 4.088 22 N -0.209 5.209 23 C -0.072 4.072 24 C -0.057 4.057 25 C -0.163 4.163 26 C -0.057 4.057 27 N -0.109 5.109 28 N -0.023 5.023 29 H 0.028 0.972 30 H 0.026 0.974 31 H 0.041 0.959 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.040 0.960 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.109 0.891 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.254 0.746 45 H 0.214 0.786 46 H 0.232 0.768 47 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -4.676 -27.559 4.503 28.313 hybrid contribution 0.976 1.120 0.569 1.590 sum -3.700 -26.440 5.071 27.175 Atomic orbital electron populations 1.20409 0.82316 0.94759 0.97600 1.44069 1.02434 1.01145 1.85959 1.19523 0.99330 0.87264 1.33155 0.91374 1.25813 0.98286 1.01714 0.98816 1.70236 1.17467 1.27535 1.42661 0.85306 0.78458 0.80253 0.76632 1.21328 1.22320 1.19582 1.21039 0.96720 0.87397 0.92361 1.23222 0.85651 0.96935 0.96850 1.87898 1.30151 1.87324 1.24306 1.22800 0.97879 0.97488 0.84476 1.21526 0.92818 0.88411 0.96448 1.47415 1.50740 1.04436 1.29223 1.22689 0.95298 1.04424 0.86084 1.16781 0.79967 0.82371 0.83331 1.90815 1.41993 1.85223 1.27485 1.20790 1.09881 0.82077 1.08947 1.24686 0.94209 0.97345 0.92547 1.70507 1.24310 1.00433 1.25676 1.22185 0.94846 0.96657 0.93494 1.21222 0.98401 0.86888 0.99232 1.22231 0.94686 1.05020 0.94359 1.25297 0.96196 0.87865 0.96375 1.76164 1.10286 1.12930 1.11527 1.46725 1.25278 1.06403 1.23920 0.97244 0.97357 0.95945 0.94533 0.91448 0.92139 0.95955 0.93495 0.93007 0.94705 0.88257 0.88481 0.89097 0.89896 0.89213 0.74572 0.78613 0.76818 0.73914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.68 8.60 127.77 1.10 10.77 16 2 N -0.61 -30.94 2.89 -726.94 -2.10 -33.04 16 3 C -0.26 -14.46 9.67 84.03 0.81 -13.64 16 4 H 0.07 3.64 7.83 -2.91 -0.02 3.61 16 5 C -0.05 -2.88 5.23 84.86 0.44 -2.44 16 6 N -0.93 -55.23 10.47 21.65 0.23 -55.00 16 7 Si 0.96 45.47 29.56 68.60 2.03 47.50 16 8 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 9 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 11 C 0.15 6.17 6.11 86.38 0.53 6.69 16 12 C 0.05 2.05 6.28 71.98 0.45 2.50 16 13 O -0.38 -14.63 8.86 -148.98 -1.32 -15.95 16 14 C 0.05 1.76 6.28 71.98 0.45 2.21 16 15 C 0.13 3.93 5.78 86.38 0.50 4.43 16 16 N -0.59 -17.00 2.84 -852.04 -2.42 -19.41 16 17 C 0.06 1.29 8.47 127.77 1.08 2.37 16 18 C 0.59 19.38 7.63 86.31 0.66 20.04 16 19 O -0.57 -22.77 16.46 -4.52 -0.07 -22.84 16 20 C -0.10 -2.89 6.93 40.40 0.28 -2.61 16 21 C 0.07 1.77 9.75 84.74 0.83 2.59 16 22 N -0.49 -12.21 11.25 -192.62 -2.17 -14.37 16 23 C 0.17 3.96 7.85 134.00 1.05 5.01 16 24 C -0.03 -0.34 10.11 22.40 0.23 -0.12 16 25 C -0.14 -0.72 10.03 22.22 0.22 -0.50 16 26 C 0.13 1.45 11.30 85.24 0.96 2.41 16 27 N -0.30 -7.37 11.71 -57.04 -0.67 -8.03 16 28 N -0.25 -7.12 4.05 -181.38 -0.74 -7.85 16 29 H 0.01 0.50 7.34 -2.39 -0.02 0.49 16 30 H 0.01 0.42 7.27 -2.39 -0.02 0.41 16 31 H 0.02 0.95 7.84 -2.39 -0.02 0.93 16 32 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 33 H 0.07 2.58 8.04 -2.39 -0.02 2.56 16 34 H 0.06 2.25 7.86 -2.39 -0.02 2.23 16 35 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.10 2.90 8.07 -2.38 -0.02 2.88 16 40 H 0.10 2.87 7.42 -2.39 -0.02 2.85 16 41 H 0.09 1.54 7.53 -2.39 -0.02 1.52 16 42 H 0.08 2.23 7.26 -2.38 -0.02 2.22 16 43 H 0.09 1.88 5.01 -2.38 -0.01 1.87 16 44 H 0.24 4.19 4.52 -2.91 -0.01 4.18 16 45 H 0.20 0.87 8.06 -2.91 -0.02 0.85 16 46 H 0.21 -1.21 8.06 -2.91 -0.02 -1.23 16 47 H 0.25 0.18 8.06 -2.91 -0.02 0.16 16 Total: -1.00 -85.73 390.48 3.36 -82.37 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 0.99 Total: 6.91 kcal Atomic # 6 Polarization: 30.13 SS G_CDS: 9.60 Total: 39.73 kcal Atomic # 7 Polarization: -129.86 SS G_CDS: -7.86 Total: -137.72 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -1.39 Total: -38.79 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -85.73 3.36 -82.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479679579.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.958 kcal (2) G-P(sol) polarization free energy of solvation -85.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds