Wall clock time and date at job start Wed Apr 1 2020 04:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46898 * 109.47306 * 2 1 4 4 C 1.46903 * 111.00100 * 64.22107 * 3 2 1 5 5 C 1.52998 * 109.46935 * 73.94989 * 4 3 2 6 6 C 1.52997 * 109.46846 * 174.91674 * 5 4 3 7 7 N 1.46505 * 109.47072 * 180.02562 * 6 5 4 8 8 C 1.34778 * 120.00168 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99880 * 359.97438 * 8 7 6 10 10 C 1.50694 * 120.00148 * 180.02562 * 8 7 6 11 11 H 1.08991 * 112.85120 * 311.19818 * 10 8 7 12 12 C 1.53782 * 113.61480 * 179.97438 * 10 8 7 13 13 C 1.53782 * 87.08226 * 220.02211 * 12 10 8 14 14 C 1.53782 * 87.08407 * 25.43228 * 13 12 10 15 15 F 1.39900 * 113.61547 * 220.02108 * 14 13 12 16 16 F 1.39900 * 113.61250 * 89.11607 * 14 13 12 17 17 C 1.46898 * 111.00015 * 300.26973 * 3 2 1 18 18 C 1.50711 * 109.46863 * 293.95405 * 17 3 2 19 19 O 1.21289 * 119.99721 * 359.97438 * 18 17 3 20 20 N 1.34780 * 119.99859 * 180.02562 * 18 17 3 21 21 C 1.37092 * 119.99922 * 180.02562 * 20 18 17 22 22 H 1.08007 * 120.00099 * 359.97438 * 21 20 18 23 23 C 1.38950 * 120.00169 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99920 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00136 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46903 * 60.00130 * 25 23 21 27 27 H 1.48503 * 109.46913 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47063 * 299.99822 * 25 23 21 29 29 H 1.09010 * 109.47258 * 59.98306 * 1 2 3 30 30 H 1.09001 * 109.47433 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47189 * 299.98606 * 1 2 3 32 32 H 1.08998 * 109.47037 * 120.00169 * 2 1 3 33 33 H 1.09000 * 109.46767 * 239.99882 * 2 1 3 34 34 H 1.08994 * 109.46923 * 193.95401 * 4 3 2 35 35 H 1.09001 * 109.46902 * 313.95246 * 4 3 2 36 36 H 1.08995 * 109.47635 * 294.92254 * 5 4 3 37 37 H 1.09009 * 109.46819 * 54.92340 * 5 4 3 38 38 H 1.09003 * 109.47652 * 300.00403 * 6 5 4 39 39 H 1.09004 * 109.47287 * 60.00519 * 6 5 4 40 40 H 0.96997 * 119.99900 * 0.02562 * 7 6 5 41 41 H 1.08997 * 113.61288 * 334.56961 * 12 10 8 42 42 H 1.09005 * 113.61338 * 105.47314 * 12 10 8 43 43 H 1.08993 * 113.61585 * 139.98559 * 13 12 10 44 44 H 1.09004 * 113.61246 * 270.80424 * 13 12 10 45 45 H 1.08998 * 109.47366 * 53.94966 * 17 3 2 46 46 H 1.08997 * 109.47618 * 173.95773 * 17 3 2 47 47 H 0.96997 * 119.99786 * 359.97438 * 20 18 17 48 48 H 0.96994 * 119.99833 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6329 2.0801 1.2350 5 6 2.4928 1.5750 2.3952 6 6 2.1789 2.3867 3.6536 7 7 3.0027 1.9034 4.7645 8 6 2.8952 2.4737 5.9810 9 8 2.1169 3.3872 6.1559 10 6 3.7430 1.9770 7.1236 11 1 3.7174 0.8925 7.2294 12 6 3.5026 2.7309 8.4422 13 6 5.0227 2.6651 8.6656 14 6 5.1639 2.5654 7.1375 15 9 6.1486 1.6620 6.7235 16 9 5.2623 3.8076 6.5016 17 6 1.5434 2.1117 -1.1844 18 6 2.1601 1.5133 -2.4226 19 8 2.9218 0.5742 -2.3274 20 7 1.8661 2.0224 -3.6354 21 6 2.4266 1.4778 -4.7617 22 1 3.1042 0.6410 -4.6771 23 6 2.1231 2.0023 -6.0120 24 7 1.2982 3.0201 -6.1150 25 14 2.8875 1.2606 -7.5467 26 1 2.4975 -0.1684 -7.6528 27 1 2.4056 1.9949 -8.7441 28 1 4.3664 1.3653 -7.4632 29 1 -0.3634 0.5141 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5136 0.8901 32 1 1.8933 -0.5139 0.8900 33 1 1.8932 -0.5139 -0.8900 34 1 1.7838 3.1524 1.1107 35 1 0.5823 1.8834 1.4488 36 1 2.2749 0.5228 2.5778 37 1 3.5470 1.6893 2.1428 38 1 2.3968 3.4390 3.4711 39 1 1.1247 2.2724 3.9061 40 1 3.6255 1.1731 4.6246 41 1 3.1252 3.7440 8.3033 42 1 2.9288 2.1607 9.1728 43 1 5.4425 3.5798 9.0841 44 1 5.3479 1.7693 9.1948 45 1 0.4579 2.0348 -1.2458 46 1 1.8296 3.1606 -1.1066 47 1 1.2572 2.7737 -3.7113 48 1 1.0861 3.3860 -6.9879 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479846686.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:39 Heat of formation + Delta-G solvation = -146.002788 kcal Electronic energy + Delta-G solvation = -30247.288780 eV Core-core repulsion = 25587.881315 eV Total energy + Delta-G solvation = -4659.407466 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -49.32265 -47.64532 -40.39475 -38.96844 -37.70344 -37.03074 -35.43419 -33.85129 -32.04621 -31.24812 -29.97384 -28.31017 -26.80916 -25.54407 -24.86325 -24.22625 -22.52490 -21.56855 -20.53823 -19.97797 -18.95454 -18.45065 -17.95445 -17.76379 -16.95554 -16.70011 -16.33846 -16.17710 -15.78988 -15.40114 -15.10434 -14.72074 -14.53169 -14.39864 -14.30353 -14.17169 -13.88670 -13.73783 -13.62712 -13.39368 -13.24751 -12.90347 -12.36216 -12.26535 -12.05180 -12.00805 -11.87845 -11.79765 -11.73813 -11.53488 -11.46632 -11.35634 -11.16310 -11.04538 -10.80804 -10.43369 -10.28844 -10.20638 -10.17185 -9.44120 -9.41040 -8.41910 -7.95456 -7.78566 -6.39874 -3.80629 1.99445 2.67614 2.95493 3.20050 3.21004 3.26604 3.30886 3.65631 3.77726 3.84320 3.92901 4.00474 4.25298 4.41201 4.65168 4.80402 4.85967 4.90351 4.93780 5.02938 5.06765 5.09524 5.21328 5.25488 5.31314 5.44885 5.50191 5.51381 5.57377 5.60451 5.71335 5.74421 5.93979 5.95730 6.02208 6.10322 6.18704 6.30776 6.37523 6.64922 7.07694 7.31284 7.44124 7.56638 7.78136 8.08243 8.64123 9.20052 9.56785 10.08904 10.77834 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.021440 B = 0.001649 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.666616 B =16976.638826 C =17426.153401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.044 3.956 3 N -0.512 5.512 4 C 0.052 3.948 5 C -0.125 4.125 6 C 0.119 3.881 7 N -0.722 5.722 8 C 0.522 3.478 9 O -0.526 6.526 10 C -0.168 4.168 11 H 0.142 0.858 12 C -0.112 4.112 13 C -0.164 4.164 14 C 0.270 3.730 15 F -0.185 7.185 16 F -0.170 7.170 17 C 0.041 3.959 18 C 0.445 3.555 19 O -0.578 6.578 20 N -0.565 5.565 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.073 0.927 35 H 0.041 0.959 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.403 0.597 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.116 0.884 45 H 0.053 0.947 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.786 -1.613 29.604 29.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.084 4.084 3 N -0.235 5.235 4 C -0.077 4.077 5 C -0.163 4.163 6 C -0.004 4.004 7 N -0.374 5.374 8 C 0.307 3.693 9 O -0.402 6.402 10 C -0.191 4.191 11 H 0.160 0.840 12 C -0.150 4.150 13 C -0.202 4.202 14 C 0.233 3.767 15 F -0.166 7.166 16 F -0.150 7.150 17 C -0.090 4.090 18 C 0.231 3.769 19 O -0.462 6.462 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.200 1.200 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.122 0.878 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.238 0.762 41 H 0.127 0.873 42 H 0.115 0.885 43 H 0.119 0.881 44 H 0.134 0.866 45 H 0.071 0.929 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.208 -1.468 29.527 29.646 hybrid contribution -0.501 -0.164 -1.192 1.304 sum 1.707 -1.632 28.335 28.433 Atomic orbital electron populations 1.22453 0.99213 1.02055 1.01515 1.22351 0.91804 0.90085 1.04127 1.61789 1.59393 1.02183 1.00123 1.22031 0.97001 0.98754 0.89879 1.21743 1.02236 0.99689 0.92679 1.21403 0.94924 0.98973 0.85133 1.46015 1.43346 1.38210 1.09791 1.19944 0.83234 0.82741 0.83390 1.90724 1.37672 1.28554 1.83274 1.24133 0.93390 1.04414 0.97124 0.84036 1.22761 0.95386 1.02832 0.94026 1.24077 0.97913 1.06210 0.92033 1.21961 0.85672 0.75692 0.93328 1.93055 1.64823 1.66546 1.92160 1.93084 1.96493 1.41672 1.83800 1.21930 0.98042 0.98377 0.90670 1.19737 0.86297 0.86838 0.84040 1.90470 1.39237 1.30417 1.86099 1.41859 1.42219 1.31374 1.04720 1.19641 1.24871 1.14936 0.83383 0.87996 1.25254 0.97038 0.96371 0.99297 1.69604 1.34977 1.24096 1.25698 0.85926 0.79335 0.78871 0.80120 1.19967 1.21011 1.19909 0.92247 0.92344 0.93097 0.91630 0.87784 0.90802 0.94106 0.91269 0.90066 0.91087 0.91323 0.76249 0.87273 0.88491 0.88128 0.86561 0.92948 0.89536 0.77526 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.61 9.28 37.16 0.34 -2.26 16 2 C 0.04 0.68 5.60 -3.83 -0.02 0.66 16 3 N -0.51 -8.18 4.39 -236.07 -1.04 -9.22 16 4 C 0.05 0.63 4.87 -3.82 -0.02 0.61 16 5 C -0.13 -1.26 5.32 -26.73 -0.14 -1.40 16 6 C 0.12 1.15 5.67 -4.04 -0.02 1.12 16 7 N -0.72 -6.28 5.56 -60.29 -0.33 -6.62 16 8 C 0.52 5.13 6.80 -10.99 -0.07 5.06 16 9 O -0.53 -7.07 15.90 5.56 0.09 -6.98 16 10 C -0.17 -1.06 4.04 -90.96 -0.37 -1.43 16 11 H 0.14 0.50 8.14 -51.93 -0.42 0.07 16 12 C -0.11 -0.57 7.38 -25.92 -0.19 -0.77 16 13 C -0.16 -0.69 7.87 -25.92 -0.20 -0.89 16 14 C 0.27 2.00 3.10 -25.91 -0.08 1.92 16 15 F -0.19 -1.54 17.41 2.25 0.04 -1.50 16 16 F -0.17 -1.78 16.69 2.25 0.04 -1.74 16 17 C 0.04 0.73 5.19 -4.97 -0.03 0.70 16 18 C 0.45 10.43 7.51 -10.98 -0.08 10.34 16 19 O -0.58 -15.37 13.89 5.55 0.08 -15.29 16 20 N -0.56 -14.29 5.29 -10.96 -0.06 -14.35 16 21 C -0.30 -8.32 9.68 -14.94 -0.14 -8.46 16 22 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.60 13.05 55.50 0.72 -23.87 16 25 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 29 H 0.06 0.89 6.27 -51.92 -0.33 0.56 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.60 6.25 -51.93 -0.32 0.27 16 32 H 0.07 0.88 6.76 -51.93 -0.35 0.53 16 33 H 0.10 2.02 5.89 -51.93 -0.31 1.72 16 34 H 0.07 0.86 7.77 -51.93 -0.40 0.46 16 35 H 0.04 0.46 5.88 -51.93 -0.31 0.15 16 36 H 0.07 0.66 6.97 -51.93 -0.36 0.29 16 37 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.40 2.67 8.47 -40.82 -0.35 2.32 16 41 H 0.11 0.77 7.43 -51.93 -0.39 0.38 16 42 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.12 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.05 0.86 5.99 -51.93 -0.31 0.54 16 46 H 0.09 1.41 7.84 -51.93 -0.41 1.00 16 47 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 48 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 394.86 15.07 5.95 5.95 Total: -1.00 -33.81 394.86 -7.70 -41.51 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -7.04 Total: 10.33 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -1.13 Total: 5.69 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.71 Total: -54.06 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: 0.17 Total: -22.27 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.08 Total: -3.24 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.81 -7.70 -41.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479846686.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.492 kcal (2) G-P(sol) polarization free energy of solvation -33.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds