Wall clock time and date at job start Wed Apr 1 2020 04:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46898 * 109.47306 * 2 1 4 4 C 1.46903 * 111.00100 * 64.22107 * 3 2 1 5 5 C 1.52998 * 109.46935 * 73.94989 * 4 3 2 6 6 C 1.52997 * 109.46846 * 174.91674 * 5 4 3 7 7 N 1.46505 * 109.47072 * 180.02562 * 6 5 4 8 8 C 1.34778 * 120.00168 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99880 * 359.97438 * 8 7 6 10 10 C 1.50694 * 120.00148 * 180.02562 * 8 7 6 11 11 H 1.08991 * 112.85120 * 311.19818 * 10 8 7 12 12 C 1.53782 * 113.61480 * 179.97438 * 10 8 7 13 13 C 1.53782 * 87.08226 * 220.02211 * 12 10 8 14 14 C 1.53782 * 87.08407 * 25.43228 * 13 12 10 15 15 F 1.39900 * 113.61547 * 220.02108 * 14 13 12 16 16 F 1.39900 * 113.61250 * 89.11607 * 14 13 12 17 17 C 1.46898 * 111.00015 * 300.26973 * 3 2 1 18 18 C 1.50711 * 109.46863 * 293.95405 * 17 3 2 19 19 O 1.21289 * 119.99721 * 359.97438 * 18 17 3 20 20 N 1.34780 * 119.99859 * 180.02562 * 18 17 3 21 21 C 1.37092 * 119.99922 * 180.02562 * 20 18 17 22 22 H 1.08007 * 120.00099 * 359.97438 * 21 20 18 23 23 C 1.38950 * 120.00169 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99920 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00136 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46903 * 60.00130 * 25 23 21 27 27 H 1.48503 * 109.46913 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47063 * 299.99822 * 25 23 21 29 29 H 1.09010 * 109.47258 * 59.98306 * 1 2 3 30 30 H 1.09001 * 109.47433 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47189 * 299.98606 * 1 2 3 32 32 H 1.08998 * 109.47037 * 120.00169 * 2 1 3 33 33 H 1.09000 * 109.46767 * 239.99882 * 2 1 3 34 34 H 1.08994 * 109.46923 * 193.95401 * 4 3 2 35 35 H 1.09001 * 109.46902 * 313.95246 * 4 3 2 36 36 H 1.08995 * 109.47635 * 294.92254 * 5 4 3 37 37 H 1.09009 * 109.46819 * 54.92340 * 5 4 3 38 38 H 1.09003 * 109.47652 * 300.00403 * 6 5 4 39 39 H 1.09004 * 109.47287 * 60.00519 * 6 5 4 40 40 H 0.96997 * 119.99900 * 0.02562 * 7 6 5 41 41 H 1.08997 * 113.61288 * 334.56961 * 12 10 8 42 42 H 1.09005 * 113.61338 * 105.47314 * 12 10 8 43 43 H 1.08993 * 113.61585 * 139.98559 * 13 12 10 44 44 H 1.09004 * 113.61246 * 270.80424 * 13 12 10 45 45 H 1.08998 * 109.47366 * 53.94966 * 17 3 2 46 46 H 1.08997 * 109.47618 * 173.95773 * 17 3 2 47 47 H 0.96997 * 119.99786 * 359.97438 * 20 18 17 48 48 H 0.96994 * 119.99833 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6329 2.0801 1.2350 5 6 2.4928 1.5750 2.3952 6 6 2.1789 2.3867 3.6536 7 7 3.0027 1.9034 4.7645 8 6 2.8952 2.4737 5.9810 9 8 2.1169 3.3872 6.1559 10 6 3.7430 1.9770 7.1236 11 1 3.7174 0.8925 7.2294 12 6 3.5026 2.7309 8.4422 13 6 5.0227 2.6651 8.6656 14 6 5.1639 2.5654 7.1375 15 9 6.1486 1.6620 6.7235 16 9 5.2623 3.8076 6.5016 17 6 1.5434 2.1117 -1.1844 18 6 2.1601 1.5133 -2.4226 19 8 2.9218 0.5742 -2.3274 20 7 1.8661 2.0224 -3.6354 21 6 2.4266 1.4778 -4.7617 22 1 3.1042 0.6410 -4.6771 23 6 2.1231 2.0023 -6.0120 24 7 1.2982 3.0201 -6.1150 25 14 2.8875 1.2606 -7.5467 26 1 2.4975 -0.1684 -7.6528 27 1 2.4056 1.9949 -8.7441 28 1 4.3664 1.3653 -7.4632 29 1 -0.3634 0.5141 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5136 0.8901 32 1 1.8933 -0.5139 0.8900 33 1 1.8932 -0.5139 -0.8900 34 1 1.7838 3.1524 1.1107 35 1 0.5823 1.8834 1.4488 36 1 2.2749 0.5228 2.5778 37 1 3.5470 1.6893 2.1428 38 1 2.3968 3.4390 3.4711 39 1 1.1247 2.2724 3.9061 40 1 3.6255 1.1731 4.6246 41 1 3.1252 3.7440 8.3033 42 1 2.9288 2.1607 9.1728 43 1 5.4425 3.5798 9.0841 44 1 5.3479 1.7693 9.1948 45 1 0.4579 2.0348 -1.2458 46 1 1.8296 3.1606 -1.1066 47 1 1.2572 2.7737 -3.7113 48 1 1.0861 3.3860 -6.9879 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479846686.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:37 Heat of formation + Delta-G solvation = -170.934087 kcal Electronic energy + Delta-G solvation = -30248.369883 eV Core-core repulsion = 25587.881315 eV Total energy + Delta-G solvation = -4660.488568 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -49.93899 -48.27670 -41.11326 -40.53938 -38.69445 -38.06706 -36.37303 -35.82654 -33.27881 -32.96045 -31.24218 -29.19258 -27.95160 -26.36829 -25.99428 -25.53413 -23.54667 -22.24452 -21.51258 -20.87625 -20.60673 -19.75018 -19.06386 -18.55095 -17.80424 -17.52618 -17.39784 -17.20152 -16.97415 -16.50093 -16.43700 -16.19980 -15.69313 -15.48056 -15.13805 -15.05076 -14.87012 -14.81059 -14.62993 -14.54279 -14.29809 -13.92737 -13.62460 -13.42490 -13.19554 -13.01734 -12.96974 -12.84389 -12.72068 -12.60555 -12.44831 -12.42016 -12.23389 -12.14847 -12.12779 -11.93590 -11.87787 -11.52892 -11.30968 -10.93379 -10.24412 -10.18971 -9.98447 -9.10108 -8.45143 -5.93676 1.29272 1.39853 1.41293 1.52239 1.99148 2.07984 2.29391 2.45185 2.73333 2.81920 3.13742 3.21611 3.33266 3.42214 3.44511 3.84970 3.91845 4.02961 4.15038 4.26242 4.28525 4.30502 4.34534 4.45501 4.47170 4.49539 4.53582 4.58631 4.60325 4.67069 4.74013 4.75784 4.92285 4.99472 5.08643 5.18052 5.20811 5.21500 5.35056 5.40903 5.45060 5.92114 6.11966 6.28828 6.39361 6.62645 7.07418 7.14660 7.58727 8.14861 8.72052 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.021440 B = 0.001649 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.666616 B =16976.638826 C =17426.153401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.046 3.954 3 N -0.530 5.530 4 C 0.053 3.947 5 C -0.111 4.111 6 C 0.126 3.874 7 N -0.717 5.717 8 C 0.515 3.485 9 O -0.569 6.569 10 C -0.162 4.162 11 H 0.176 0.824 12 C -0.111 4.111 13 C -0.146 4.146 14 C 0.250 3.750 15 F -0.192 7.192 16 F -0.195 7.195 17 C 0.053 3.947 18 C 0.443 3.557 19 O -0.613 6.613 20 N -0.576 5.576 21 C -0.332 4.332 22 H 0.079 0.921 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.992 3.008 26 H -0.272 1.272 27 H -0.271 1.271 28 H -0.273 1.273 29 H 0.040 0.960 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.414 0.586 41 H 0.084 0.916 42 H 0.123 0.877 43 H 0.105 0.895 44 H 0.146 0.854 45 H 0.071 0.929 46 H 0.104 0.896 47 H 0.395 0.605 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.502 -2.352 31.451 31.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.081 4.081 3 N -0.254 5.254 4 C -0.075 4.075 5 C -0.150 4.150 6 C 0.002 3.998 7 N -0.368 5.368 8 C 0.302 3.698 9 O -0.448 6.448 10 C -0.183 4.183 11 H 0.193 0.807 12 C -0.149 4.149 13 C -0.184 4.184 14 C 0.213 3.787 15 F -0.173 7.173 16 F -0.176 7.176 17 C -0.078 4.078 18 C 0.231 3.769 19 O -0.499 6.499 20 N -0.214 5.214 21 C -0.461 4.461 22 H 0.097 0.903 23 C -0.214 4.214 24 N -0.563 5.563 25 Si 0.816 3.184 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.198 1.198 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.251 0.749 41 H 0.103 0.897 42 H 0.141 0.859 43 H 0.123 0.877 44 H 0.164 0.836 45 H 0.089 0.911 46 H 0.122 0.878 47 H 0.228 0.772 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.928 -2.214 31.388 31.525 hybrid contribution -0.392 0.048 -1.718 1.762 sum 1.536 -2.166 29.670 29.789 Atomic orbital electron populations 1.22365 0.97452 1.02889 1.01688 1.22227 0.93233 0.89744 1.02945 1.61736 1.60264 1.02553 1.00816 1.22114 0.98220 0.98713 0.88484 1.21586 1.01122 1.00256 0.92005 1.21242 0.95199 0.98119 0.85245 1.46006 1.43157 1.38259 1.09423 1.20589 0.82950 0.82067 0.84234 1.90703 1.39668 1.30385 1.84019 1.24313 0.91676 1.06347 0.96010 0.80660 1.22757 0.96425 1.01774 0.93952 1.24117 0.96931 1.07870 0.89481 1.22567 0.86003 0.74787 0.95317 1.93037 1.65195 1.66635 1.92444 1.93030 1.96637 1.43384 1.84536 1.21792 0.98520 0.98797 0.88722 1.20775 0.85182 0.85872 0.85101 1.90450 1.40670 1.31905 1.86873 1.41939 1.42689 1.31766 1.05001 1.19616 1.25984 1.15439 0.85094 0.90305 1.26031 0.97177 0.96576 1.01599 1.69670 1.35353 1.24594 1.26638 0.84999 0.78399 0.78227 0.76762 1.19682 1.19557 1.19796 0.94070 0.91297 0.90711 0.89418 0.92317 0.90355 0.92530 0.90138 0.91170 0.92468 0.91100 0.74949 0.89725 0.85864 0.87663 0.83647 0.91134 0.87793 0.77157 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.67 9.28 71.98 0.67 -4.00 16 2 C 0.05 1.40 5.60 86.30 0.48 1.88 16 3 N -0.53 -16.41 4.39 -900.80 -3.95 -20.36 16 4 C 0.05 1.16 4.87 86.30 0.42 1.58 16 5 C -0.11 -2.04 5.32 30.59 0.16 -1.88 16 6 C 0.13 2.26 5.67 86.38 0.49 2.75 16 7 N -0.72 -11.54 5.56 -463.05 -2.57 -14.12 16 8 C 0.52 9.65 6.80 87.65 0.60 10.25 16 9 O -0.57 -15.27 15.90 -3.03 -0.05 -15.32 16 10 C -0.16 -1.72 4.04 -11.01 -0.04 -1.77 16 11 H 0.18 0.61 8.14 -2.39 -0.02 0.59 16 12 C -0.11 -0.92 7.38 31.12 0.23 -0.69 16 13 C -0.15 -0.87 7.87 31.12 0.24 -0.62 16 14 C 0.25 3.37 3.10 31.12 0.10 3.46 16 15 F -0.19 -2.91 17.41 44.97 0.78 -2.13 16 16 F -0.19 -4.12 16.69 44.97 0.75 -3.37 16 17 C 0.05 1.84 5.19 85.56 0.44 2.28 16 18 C 0.44 21.21 7.51 87.66 0.66 21.86 16 19 O -0.61 -33.73 13.89 -3.06 -0.04 -33.77 16 20 N -0.58 -29.90 5.29 -306.97 -1.62 -31.53 16 21 C -0.33 -18.99 9.68 84.04 0.81 -18.18 16 22 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 23 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 24 N -0.92 -50.25 13.05 21.66 0.28 -49.97 16 25 Si 0.99 43.36 29.55 68.60 2.03 45.39 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 27 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 28 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 29 H 0.04 1.18 6.27 -2.38 -0.01 1.16 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.07 1.52 6.25 -2.39 -0.01 1.51 16 32 H 0.09 2.21 6.76 -2.39 -0.02 2.20 16 33 H 0.06 2.34 5.89 -2.39 -0.01 2.32 16 34 H 0.08 1.68 7.77 -2.39 -0.02 1.66 16 35 H 0.06 1.10 5.88 -2.39 -0.01 1.08 16 36 H 0.08 1.31 6.97 -2.39 -0.02 1.30 16 37 H 0.07 1.47 8.14 -2.38 -0.02 1.46 16 38 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.41 4.76 8.47 -92.71 -0.79 3.98 16 41 H 0.08 1.16 7.43 -2.39 -0.02 1.14 16 42 H 0.12 0.37 8.14 -2.38 -0.02 0.35 16 43 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.15 0.04 8.14 -2.38 -0.02 0.02 16 45 H 0.07 2.22 5.99 -2.39 -0.01 2.21 16 46 H 0.10 3.26 7.84 -2.39 -0.02 3.24 16 47 H 0.39 19.55 7.90 -92.71 -0.73 18.82 16 48 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -76.17 394.86 0.83 -75.35 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: -0.50 Total: 33.21 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: 5.73 Total: 16.63 kcal Atomic # 7 Polarization: -108.11 SS G_CDS: -7.87 Total: -115.97 kcal Atomic # 8 Polarization: -49.00 SS G_CDS: -0.09 Total: -49.09 kcal Atomic # 9 Polarization: -7.04 SS G_CDS: 1.53 Total: -5.50 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -76.17 0.83 -75.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479846686.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.589 kcal (2) G-P(sol) polarization free energy of solvation -76.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds