Wall clock time and date at job start Wed Apr 1 2020 05:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34771 * 120.00463 * 2 1 4 4 O 1.21548 * 120.00692 * 186.97208 * 3 2 1 5 5 C 1.47834 * 119.99510 * 6.97158 * 3 2 1 6 6 C 1.39946 * 120.94391 * 19.50251 * 5 3 2 7 7 N 1.32145 * 118.92652 * 179.71838 * 6 5 3 8 8 C 1.31870 * 120.96770 * 0.56132 * 7 6 5 9 9 N 1.31867 * 122.09365 * 359.70806 * 8 7 6 10 10 C 1.32150 * 120.96829 * 359.97438 * 9 8 7 11 11 C 1.46501 * 119.99711 * 180.27372 * 2 1 3 12 12 C 1.53125 * 109.52408 * 59.68512 * 11 2 1 13 13 C 1.53033 * 109.27810 * 182.43781 * 12 11 2 14 14 N 1.46844 * 109.52271 * 59.18060 * 13 12 11 15 15 C 1.46908 * 111.00085 * 174.15948 * 14 13 12 16 16 C 1.50696 * 109.47016 * 294.20746 * 15 14 13 17 17 O 1.21300 * 119.99817 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00420 * 179.97438 * 16 15 14 19 19 C 1.37093 * 120.00551 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99537 * 0.02562 * 19 18 16 21 21 C 1.38948 * 120.00132 * 179.97438 * 19 18 16 22 22 N 1.31409 * 120.00015 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00006 * 0.02562 * 21 19 18 24 24 H 1.48488 * 109.47144 * 89.99791 * 23 21 19 25 25 H 1.48504 * 109.46883 * 209.99843 * 23 21 19 26 26 H 1.48501 * 109.46884 * 329.99540 * 23 21 19 27 27 C 1.46851 * 111.19900 * 298.25685 * 14 13 12 28 28 C 1.53034 * 109.52536 * 61.74209 * 27 14 13 29 29 H 1.09005 * 109.46954 * 264.35471 * 1 2 3 30 30 H 1.08996 * 109.46517 * 24.35194 * 1 2 3 31 31 H 1.08999 * 109.46976 * 144.35172 * 1 2 3 32 32 H 1.08007 * 120.53298 * 359.96910 * 6 5 3 33 33 H 1.07997 * 118.95170 * 179.72663 * 8 7 6 34 34 H 1.07996 * 120.53550 * 179.97438 * 10 9 8 35 35 H 1.08999 * 109.52114 * 179.87078 * 11 2 1 36 36 H 1.09003 * 109.49668 * 302.38184 * 12 11 2 37 37 H 1.09000 * 109.50314 * 62.49344 * 12 11 2 38 38 H 1.08991 * 109.46672 * 299.16306 * 13 12 11 39 39 H 1.09000 * 109.45491 * 179.18545 * 13 12 11 40 40 H 1.08998 * 109.46891 * 54.20496 * 15 14 13 41 41 H 1.09002 * 109.47030 * 174.20905 * 15 14 13 42 42 H 0.97002 * 119.99495 * 359.97438 * 18 16 15 43 43 H 0.96998 * 120.00399 * 180.02562 * 22 21 19 44 44 H 1.09006 * 109.46088 * 301.72616 * 27 14 13 45 45 H 1.09004 * 109.45306 * 181.75698 * 27 14 13 46 46 H 1.09001 * 109.50294 * 180.88471 * 28 27 14 47 47 H 1.09000 * 109.50250 * 60.75991 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3477 1.1710 -0.1278 5 6 1.4080 2.4426 0.1554 6 6 0.1181 2.4714 0.6975 7 7 -0.4965 3.6344 0.8234 8 6 0.0838 4.7539 0.4371 9 7 1.2952 4.7716 -0.0835 10 6 1.9844 3.6551 -0.2402 11 6 2.1975 -1.2688 -0.0061 12 6 1.8225 -2.0702 -1.2558 13 6 2.5437 -3.4196 -1.2259 14 7 2.1568 -4.1561 -0.0159 15 6 2.7216 -5.5123 -0.0218 16 6 2.1065 -6.3077 -1.1442 17 8 1.2786 -5.7954 -1.8678 18 7 2.4761 -7.5882 -1.3442 19 6 1.9161 -8.3120 -2.3650 20 1 1.1790 -7.8559 -3.0092 21 6 2.2977 -9.6320 -2.5714 22 7 1.7613 -10.3257 -3.5502 23 14 3.5732 -10.4207 -1.4576 24 1 2.8941 -11.0583 -0.3012 25 1 4.3262 -11.4499 -2.2185 26 1 4.5133 -9.3807 -0.9678 27 6 2.5494 -3.4278 1.1974 28 6 1.8284 -2.0787 1.2399 29 1 -0.3633 -0.1011 1.0227 30 1 -0.3632 0.9362 -0.4237 31 1 -0.3633 -0.8351 -0.5989 32 1 -0.3656 1.5582 1.0115 33 1 -0.4501 5.6857 0.5510 34 1 2.9759 3.6777 -0.6677 35 1 3.2693 -1.0706 -0.0074 36 1 0.7449 -2.2337 -1.2733 37 1 2.1217 -1.5172 -2.1461 38 1 3.6212 -3.2555 -1.2222 39 1 2.2674 -3.9985 -2.1072 40 1 3.8006 -5.4558 -0.1654 41 1 2.5066 -5.9996 0.9292 42 1 3.1385 -7.9977 -0.7658 43 1 2.0273 -11.2473 -3.6941 44 1 3.6270 -3.2637 1.1897 45 1 2.2775 -4.0129 2.0760 46 1 2.1321 -1.5318 2.1326 47 1 0.7510 -2.2424 1.2615 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479886326.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:57 Heat of formation + Delta-G solvation = 22.741707 kcal Electronic energy + Delta-G solvation = -30126.997370 eV Core-core repulsion = 25925.596401 eV Total energy + Delta-G solvation = -4201.400969 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.86434 -40.28671 -39.06554 -37.78601 -36.11573 -34.37674 -33.98215 -33.33792 -31.81257 -31.53202 -30.85874 -28.10204 -27.44166 -25.74458 -24.94686 -24.32169 -23.22243 -22.73304 -20.53416 -19.66750 -19.38738 -18.47606 -18.30040 -18.09627 -17.38335 -16.70467 -16.14220 -15.82614 -15.53522 -15.14499 -14.95265 -14.91670 -14.62595 -14.36941 -14.16034 -14.14681 -13.66770 -13.54000 -13.44982 -13.29603 -13.05230 -12.53179 -12.36254 -12.24796 -12.12483 -11.86335 -11.72609 -11.34848 -11.31352 -11.21469 -11.16646 -10.73576 -10.60949 -10.59271 -10.33576 -10.13130 -9.99565 -9.83110 -9.55898 -9.02479 -8.59285 -8.20153 -7.99106 -6.33033 -3.84436 -0.08190 0.47199 2.32209 2.44815 3.00878 3.05245 3.13713 3.24644 3.52083 3.59422 3.71018 3.86916 3.87893 3.94395 4.08531 4.32252 4.55096 4.57340 4.70492 4.76168 4.78407 4.91809 4.96782 5.13808 5.16751 5.19448 5.20917 5.31683 5.42431 5.53661 5.55483 5.62505 5.70040 5.71017 5.82277 5.88415 5.90843 5.99269 6.09711 6.24294 6.30491 6.39092 6.88596 7.13788 7.28521 7.43338 7.56595 7.64362 8.12560 8.58149 8.93279 9.40577 9.81214 10.80017 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.032727 B = 0.001851 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.360292 B =15123.791324 C =15312.402958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.600 5.600 3 C 0.568 3.432 4 O -0.529 6.529 5 C -0.241 4.241 6 C 0.161 3.839 7 N -0.523 5.523 8 C 0.312 3.688 9 N -0.523 5.523 10 C 0.208 3.792 11 C 0.138 3.862 12 C -0.120 4.120 13 C 0.054 3.946 14 N -0.516 5.516 15 C 0.043 3.957 16 C 0.452 3.548 17 O -0.560 6.560 18 N -0.591 5.591 19 C -0.304 4.304 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.058 3.942 28 C -0.121 4.121 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.195 0.805 33 H 0.202 0.798 34 H 0.180 0.820 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.025 0.975 39 H 0.109 0.891 40 H 0.049 0.951 41 H 0.090 0.910 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.033 0.967 45 H 0.079 0.921 46 H 0.068 0.932 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.473 24.475 12.200 27.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.331 5.331 3 C 0.355 3.645 4 O -0.406 6.406 5 C -0.249 4.249 6 C -0.005 4.005 7 N -0.236 5.236 8 C 0.025 3.975 9 N -0.236 5.236 10 C 0.041 3.959 11 C 0.036 3.964 12 C -0.158 4.158 13 C -0.074 4.074 14 N -0.240 5.240 15 C -0.088 4.088 16 C 0.238 3.762 17 O -0.442 6.442 18 N -0.230 5.230 19 C -0.433 4.433 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.071 4.071 28 C -0.160 4.160 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.211 0.789 33 H 0.218 0.782 34 H 0.197 0.803 35 H 0.118 0.882 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.044 0.956 39 H 0.127 0.873 40 H 0.067 0.933 41 H 0.109 0.891 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.051 0.949 45 H 0.097 0.903 46 H 0.086 0.914 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.425 25.451 11.619 28.014 hybrid contribution 2.229 -1.561 0.746 2.822 sum 0.804 23.889 12.366 26.912 Atomic orbital electron populations 1.22506 0.79809 1.04277 1.02318 1.47788 1.07031 1.05790 1.72515 1.17841 0.86848 0.82896 0.76898 1.90804 1.13565 1.86777 1.49449 1.21803 0.98372 0.96870 1.07849 1.24707 0.89725 0.97664 0.88399 1.68599 1.37594 0.99099 1.18324 1.25331 0.88149 0.97019 0.86985 1.68592 1.08912 1.30550 1.15564 1.23521 0.98802 0.85796 0.87797 1.21361 0.97654 0.81325 0.96081 1.21896 1.02396 0.95076 0.96439 1.22227 0.96083 0.93891 0.95157 1.61531 1.59780 1.01102 1.01635 1.21867 0.96998 0.90079 0.99849 1.19641 0.86374 0.82645 0.87542 1.90521 1.35128 1.69619 1.48892 1.42219 1.39000 1.11271 1.30526 1.19416 1.22198 0.93922 1.07762 0.86266 1.25038 0.97962 0.96214 0.96951 1.69617 1.42633 1.10122 1.29736 0.86676 0.81656 0.80008 0.81066 1.19611 1.20206 1.19536 1.22053 0.97203 0.94138 0.93722 1.21904 1.02213 0.94959 0.96888 0.91205 0.90138 0.89315 0.78910 0.78162 0.80279 0.88154 0.90260 0.91334 0.95633 0.87304 0.93307 0.89147 0.79727 0.91613 0.94911 0.90269 0.91370 0.90343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.32 7.71 59.85 0.46 0.78 16 2 N -0.60 -5.39 2.77 -174.90 -0.48 -5.88 16 3 C 0.57 5.91 7.55 -12.34 -0.09 5.82 16 4 O -0.53 -7.24 15.96 5.32 0.08 -7.16 16 5 C -0.24 -2.06 5.60 -104.69 -0.59 -2.65 16 6 C 0.16 1.14 8.90 -16.78 -0.15 0.99 16 7 N -0.52 -4.07 10.42 -14.24 -0.15 -4.21 16 8 C 0.31 2.21 12.27 -92.03 -1.13 1.08 16 9 N -0.52 -4.46 10.42 -14.24 -0.15 -4.61 16 10 C 0.21 1.79 10.88 -16.77 -0.18 1.61 16 11 C 0.14 1.45 2.59 -67.80 -0.18 1.28 16 12 C -0.12 -1.45 5.39 -26.65 -0.14 -1.59 16 13 C 0.05 0.81 5.11 -3.84 -0.02 0.79 16 14 N -0.52 -7.59 4.40 -236.11 -1.04 -8.63 16 15 C 0.04 0.69 5.45 -4.97 -0.03 0.66 16 16 C 0.45 9.85 7.46 -10.99 -0.08 9.76 16 17 O -0.56 -14.22 13.90 5.54 0.08 -14.15 16 18 N -0.59 -13.68 5.09 -10.97 -0.06 -13.73 16 19 C -0.30 -8.42 10.16 -14.94 -0.15 -8.57 16 20 H 0.12 3.77 7.39 -52.49 -0.39 3.39 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -25.42 13.96 55.50 0.77 -24.65 16 23 Si 0.88 19.07 27.74 -169.99 -4.71 14.36 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 26 H -0.27 -5.32 6.52 56.52 0.37 -4.96 16 27 C 0.06 0.64 5.46 -3.83 -0.02 0.62 16 28 C -0.12 -1.15 5.41 -26.65 -0.14 -1.30 16 29 H 0.07 0.28 7.18 -51.93 -0.37 -0.09 16 30 H 0.08 0.41 5.03 -51.93 -0.26 0.15 16 31 H 0.09 0.57 6.40 -51.93 -0.33 0.24 16 32 H 0.19 0.93 4.16 -52.48 -0.22 0.71 16 33 H 0.20 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.18 1.38 7.87 -52.49 -0.41 0.96 16 35 H 0.10 1.23 6.92 -51.93 -0.36 0.87 16 36 H 0.08 0.98 6.59 -51.93 -0.34 0.64 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.11 2.02 5.78 -51.93 -0.30 1.71 16 40 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 41 H 0.09 1.24 7.99 -51.93 -0.41 0.83 16 42 H 0.37 7.53 5.76 -40.82 -0.24 7.30 16 43 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.08 0.79 8.02 -51.93 -0.42 0.37 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.08 0.74 7.60 -51.93 -0.39 0.34 16 LS Contribution 374.57 15.07 5.64 5.64 Total: -1.00 -34.59 374.57 -8.70 -43.29 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -6.15 Total: 9.42 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: -2.54 Total: 10.29 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: -1.10 Total: -61.71 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: 0.16 Total: -21.30 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.71 Total: 14.36 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.59 -8.70 -43.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479886326.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.036 kcal (2) G-P(sol) polarization free energy of solvation -34.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds