Wall clock time and date at job start Wed Apr 1 2020 05:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34771 * 120.00463 * 2 1 4 4 O 1.21548 * 120.00692 * 186.97208 * 3 2 1 5 5 C 1.47834 * 119.99510 * 6.97158 * 3 2 1 6 6 C 1.39946 * 120.94391 * 19.50251 * 5 3 2 7 7 N 1.32145 * 118.92652 * 179.71838 * 6 5 3 8 8 C 1.31870 * 120.96770 * 0.56132 * 7 6 5 9 9 N 1.31867 * 122.09365 * 359.70806 * 8 7 6 10 10 C 1.32150 * 120.96829 * 359.97438 * 9 8 7 11 11 C 1.46501 * 119.99711 * 180.27372 * 2 1 3 12 12 C 1.53125 * 109.52408 * 59.68512 * 11 2 1 13 13 C 1.53033 * 109.27810 * 182.43781 * 12 11 2 14 14 N 1.46844 * 109.52271 * 59.18060 * 13 12 11 15 15 C 1.46908 * 111.00085 * 174.15948 * 14 13 12 16 16 C 1.50696 * 109.47016 * 294.20746 * 15 14 13 17 17 O 1.21300 * 119.99817 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00420 * 179.97438 * 16 15 14 19 19 C 1.37093 * 120.00551 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99537 * 0.02562 * 19 18 16 21 21 C 1.38948 * 120.00132 * 179.97438 * 19 18 16 22 22 N 1.31409 * 120.00015 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00006 * 0.02562 * 21 19 18 24 24 H 1.48488 * 109.47144 * 89.99791 * 23 21 19 25 25 H 1.48504 * 109.46883 * 209.99843 * 23 21 19 26 26 H 1.48501 * 109.46884 * 329.99540 * 23 21 19 27 27 C 1.46851 * 111.19900 * 298.25685 * 14 13 12 28 28 C 1.53034 * 109.52536 * 61.74209 * 27 14 13 29 29 H 1.09005 * 109.46954 * 264.35471 * 1 2 3 30 30 H 1.08996 * 109.46517 * 24.35194 * 1 2 3 31 31 H 1.08999 * 109.46976 * 144.35172 * 1 2 3 32 32 H 1.08007 * 120.53298 * 359.96910 * 6 5 3 33 33 H 1.07997 * 118.95170 * 179.72663 * 8 7 6 34 34 H 1.07996 * 120.53550 * 179.97438 * 10 9 8 35 35 H 1.08999 * 109.52114 * 179.87078 * 11 2 1 36 36 H 1.09003 * 109.49668 * 302.38184 * 12 11 2 37 37 H 1.09000 * 109.50314 * 62.49344 * 12 11 2 38 38 H 1.08991 * 109.46672 * 299.16306 * 13 12 11 39 39 H 1.09000 * 109.45491 * 179.18545 * 13 12 11 40 40 H 1.08998 * 109.46891 * 54.20496 * 15 14 13 41 41 H 1.09002 * 109.47030 * 174.20905 * 15 14 13 42 42 H 0.97002 * 119.99495 * 359.97438 * 18 16 15 43 43 H 0.96998 * 120.00399 * 180.02562 * 22 21 19 44 44 H 1.09006 * 109.46088 * 301.72616 * 27 14 13 45 45 H 1.09004 * 109.45306 * 181.75698 * 27 14 13 46 46 H 1.09001 * 109.50294 * 180.88471 * 28 27 14 47 47 H 1.09000 * 109.50250 * 60.75991 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3477 1.1710 -0.1278 5 6 1.4080 2.4426 0.1554 6 6 0.1181 2.4714 0.6975 7 7 -0.4965 3.6344 0.8234 8 6 0.0838 4.7539 0.4371 9 7 1.2952 4.7716 -0.0835 10 6 1.9844 3.6551 -0.2402 11 6 2.1975 -1.2688 -0.0061 12 6 1.8225 -2.0702 -1.2558 13 6 2.5437 -3.4196 -1.2259 14 7 2.1568 -4.1561 -0.0159 15 6 2.7216 -5.5123 -0.0218 16 6 2.1065 -6.3077 -1.1442 17 8 1.2786 -5.7954 -1.8678 18 7 2.4761 -7.5882 -1.3442 19 6 1.9161 -8.3120 -2.3650 20 1 1.1790 -7.8559 -3.0092 21 6 2.2977 -9.6320 -2.5714 22 7 1.7613 -10.3257 -3.5502 23 14 3.5732 -10.4207 -1.4576 24 1 2.8941 -11.0583 -0.3012 25 1 4.3262 -11.4499 -2.2185 26 1 4.5133 -9.3807 -0.9678 27 6 2.5494 -3.4278 1.1974 28 6 1.8284 -2.0787 1.2399 29 1 -0.3633 -0.1011 1.0227 30 1 -0.3632 0.9362 -0.4237 31 1 -0.3633 -0.8351 -0.5989 32 1 -0.3656 1.5582 1.0115 33 1 -0.4501 5.6857 0.5510 34 1 2.9759 3.6777 -0.6677 35 1 3.2693 -1.0706 -0.0074 36 1 0.7449 -2.2337 -1.2733 37 1 2.1217 -1.5172 -2.1461 38 1 3.6212 -3.2555 -1.2222 39 1 2.2674 -3.9985 -2.1072 40 1 3.8006 -5.4558 -0.1654 41 1 2.5066 -5.9996 0.9292 42 1 3.1385 -7.9977 -0.7658 43 1 2.0273 -11.2473 -3.6941 44 1 3.6270 -3.2637 1.1897 45 1 2.2775 -4.0129 2.0760 46 1 2.1321 -1.5318 2.1326 47 1 0.7510 -2.2424 1.2615 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479886326.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:54 Heat of formation + Delta-G solvation = -3.753837 kcal Electronic energy + Delta-G solvation = -30128.146303 eV Core-core repulsion = 25925.596401 eV Total energy + Delta-G solvation = -4202.549902 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.49583 -41.14000 -40.42148 -39.09191 -37.02376 -35.93278 -34.98194 -34.16222 -33.71627 -32.48434 -31.82439 -29.09996 -28.40026 -26.76368 -25.75885 -25.52869 -24.21142 -23.78896 -21.38120 -21.22740 -20.50658 -20.18240 -19.12331 -18.64789 -18.12443 -17.68939 -17.48813 -16.87661 -16.66436 -16.48085 -16.25574 -15.67328 -15.55357 -15.37535 -15.19440 -15.00320 -14.83541 -14.73090 -14.54154 -14.39251 -14.07957 -14.02223 -13.78226 -13.22603 -12.99370 -12.85057 -12.78282 -12.70398 -12.40626 -12.31097 -12.14053 -11.97862 -11.93751 -11.71465 -11.56536 -11.40906 -11.09749 -10.81043 -10.42422 -10.32382 -10.20896 -9.76757 -9.19563 -8.39388 -5.99566 -0.68300 -0.11777 1.31171 1.36540 1.45104 1.57616 1.72230 1.99205 2.24227 2.63537 2.65013 3.02363 3.03861 3.16106 3.24049 3.25684 3.35874 3.68410 3.82112 3.84117 3.97933 4.07202 4.14129 4.26105 4.30555 4.35082 4.41738 4.45404 4.50541 4.53823 4.57999 4.63036 4.74523 4.81088 4.91769 4.98397 5.08052 5.14762 5.15917 5.30927 5.39733 5.55282 5.69880 5.91808 6.03420 6.17614 6.24111 6.62344 6.85850 6.88437 6.91377 7.43098 8.00510 8.78207 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.032727 B = 0.001851 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.360292 B =15123.791324 C =15312.402958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.596 5.596 3 C 0.569 3.431 4 O -0.570 6.570 5 C -0.251 4.251 6 C 0.171 3.829 7 N -0.533 5.533 8 C 0.313 3.687 9 N -0.539 5.539 10 C 0.201 3.799 11 C 0.146 3.854 12 C -0.111 4.111 13 C 0.058 3.942 14 N -0.532 5.532 15 C 0.054 3.946 16 C 0.452 3.548 17 O -0.603 6.603 18 N -0.594 5.594 19 C -0.324 4.324 20 H 0.056 0.944 21 C -0.017 4.017 22 N -0.936 5.936 23 Si 0.964 3.036 24 H -0.256 1.256 25 H -0.278 1.278 26 H -0.232 1.232 27 C 0.057 3.943 28 C -0.113 4.113 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.218 0.782 33 H 0.233 0.767 34 H 0.180 0.820 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.031 0.969 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.125 0.875 42 H 0.389 0.611 43 H 0.278 0.722 44 H 0.041 0.959 45 H 0.100 0.900 46 H 0.088 0.912 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.299 25.372 15.959 29.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.326 5.326 3 C 0.357 3.643 4 O -0.450 6.450 5 C -0.258 4.258 6 C 0.005 3.995 7 N -0.246 5.246 8 C 0.027 3.973 9 N -0.252 5.252 10 C 0.034 3.966 11 C 0.043 3.957 12 C -0.149 4.149 13 C -0.070 4.070 14 N -0.257 5.257 15 C -0.077 4.077 16 C 0.239 3.761 17 O -0.487 6.487 18 N -0.236 5.236 19 C -0.454 4.454 20 H 0.074 0.926 21 C -0.215 4.215 22 N -0.577 5.577 23 Si 0.784 3.216 24 H -0.181 1.181 25 H -0.203 1.203 26 H -0.156 1.156 27 C -0.071 4.071 28 C -0.151 4.151 29 H 0.117 0.883 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.234 0.766 33 H 0.249 0.751 34 H 0.197 0.803 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.049 0.951 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.143 0.857 42 H 0.224 0.776 43 H 0.087 0.913 44 H 0.059 0.941 45 H 0.118 0.882 46 H 0.106 0.894 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.677 26.382 15.403 30.557 hybrid contribution 1.848 -1.711 -0.520 2.571 sum 1.171 24.671 14.884 28.836 Atomic orbital electron populations 1.22758 0.77797 1.04724 1.04211 1.47794 1.08211 1.04877 1.71686 1.18074 0.86428 0.83626 0.76173 1.90781 1.15328 1.87342 1.51541 1.21636 0.99082 0.95814 1.09296 1.25066 0.88899 0.98413 0.87072 1.68706 1.37697 0.99409 1.18806 1.25994 0.87700 0.98074 0.85518 1.68653 1.09693 1.30448 1.16447 1.23616 0.99037 0.86160 0.87749 1.21141 0.96986 0.81872 0.95729 1.21772 1.01743 0.94006 0.97418 1.22042 0.96612 0.94433 0.93954 1.61501 1.60456 1.00953 1.02791 1.21820 0.97664 0.90051 0.98191 1.20906 0.85001 0.82224 0.87923 1.90514 1.36947 1.70487 1.50722 1.42054 1.39743 1.11724 1.30065 1.18984 1.22351 0.95018 1.09002 0.92590 1.26096 1.00500 0.96195 0.98697 1.69803 1.44817 1.10805 1.32239 0.85377 0.78423 0.79286 0.78506 1.18078 1.20288 1.15561 1.22189 0.97947 0.94599 0.92328 1.21867 1.02439 0.94094 0.96747 0.88264 0.89094 0.89715 0.76619 0.75141 0.80330 0.89792 0.90627 0.92006 0.95090 0.91838 0.90864 0.85728 0.77601 0.91255 0.94083 0.88203 0.89393 0.89751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.44 7.71 127.77 0.99 1.43 16 2 N -0.60 -9.80 2.77 -825.55 -2.28 -12.08 16 3 C 0.57 11.38 7.55 86.78 0.66 12.04 16 4 O -0.57 -15.68 15.96 -3.87 -0.06 -15.75 16 5 C -0.25 -4.00 5.60 -19.91 -0.11 -4.11 16 6 C 0.17 2.04 8.90 85.06 0.76 2.80 16 7 N -0.53 -7.02 10.42 -198.98 -2.07 -9.10 16 8 C 0.31 3.80 12.27 180.84 2.22 6.02 16 9 N -0.54 -8.60 10.42 -198.98 -2.07 -10.67 16 10 C 0.20 3.37 10.88 85.06 0.93 4.29 16 11 C 0.15 2.87 2.59 45.07 0.12 2.98 16 12 C -0.11 -2.69 5.39 30.65 0.17 -2.52 16 13 C 0.06 1.73 5.11 86.32 0.44 2.17 16 14 N -0.53 -14.68 4.40 -900.93 -3.96 -18.64 16 15 C 0.05 1.57 5.45 85.55 0.47 2.04 16 16 C 0.45 19.73 7.46 87.66 0.65 20.38 16 17 O -0.60 -32.09 13.90 -3.09 -0.04 -32.13 16 18 N -0.59 -27.41 5.09 -306.99 -1.56 -28.97 16 19 C -0.32 -18.74 10.16 84.04 0.85 -17.89 16 20 H 0.06 3.86 7.39 -2.91 -0.02 3.84 16 21 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 22 N -0.94 -56.17 13.96 21.66 0.30 -55.87 16 23 Si 0.96 38.43 27.74 68.60 1.90 40.33 16 24 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 25 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 26 H -0.23 -7.78 6.52 99.48 0.65 -7.13 16 27 C 0.06 1.06 5.46 86.32 0.47 1.53 16 28 C -0.11 -1.80 5.41 30.65 0.17 -1.64 16 29 H 0.10 0.42 7.18 -2.38 -0.02 0.40 16 30 H 0.09 0.71 5.03 -2.39 -0.01 0.70 16 31 H 0.08 0.94 6.40 -2.39 -0.02 0.93 16 32 H 0.22 1.35 4.16 -2.91 -0.01 1.34 16 33 H 0.23 1.07 8.06 -2.91 -0.02 1.05 16 34 H 0.18 2.84 7.87 -2.91 -0.02 2.82 16 35 H 0.08 1.99 6.92 -2.39 -0.02 1.97 16 36 H 0.08 1.88 6.59 -2.39 -0.02 1.86 16 37 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.06 2.48 5.78 -2.39 -0.01 2.47 16 40 H 0.07 1.84 8.12 -2.39 -0.02 1.82 16 41 H 0.12 2.86 7.99 -2.39 -0.02 2.84 16 42 H 0.39 14.83 5.76 -92.71 -0.53 14.30 16 43 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 44 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 45 H 0.10 1.51 8.02 -2.39 -0.02 1.49 16 46 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.08 1.29 7.60 -2.39 -0.02 1.27 16 Total: -1.00 -82.28 374.57 -0.19 -82.47 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: 0.43 Total: 31.32 kcal Atomic # 6 Polarization: 19.86 SS G_CDS: 9.23 Total: 29.09 kcal Atomic # 7 Polarization: -123.68 SS G_CDS: -11.65 Total: -135.34 kcal Atomic # 8 Polarization: -47.77 SS G_CDS: -0.10 Total: -47.88 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 1.90 Total: 40.33 kcal Total: -82.28 -0.19 -82.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479886326.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.716 kcal (2) G-P(sol) polarization free energy of solvation -82.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds