Wall clock time and date at job start Wed Apr 1 2020 06:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46492 * 120.00169 * 2 1 4 4 C 1.53002 * 109.47289 * 270.00140 * 3 2 1 5 5 N 1.46904 * 109.47057 * 180.02562 * 4 3 2 6 6 C 1.46900 * 111.00088 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47429 * 180.02562 * 6 5 4 8 8 O 1.21290 * 119.99674 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00255 * 179.97438 * 7 6 5 10 10 C 1.37095 * 120.00211 * 179.97438 * 9 7 6 11 11 H 1.08000 * 119.99977 * 0.02562 * 10 9 7 12 12 C 1.38949 * 120.00310 * 179.97438 * 10 9 7 13 13 N 1.31407 * 119.99785 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00165 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47091 * 90.00431 * 14 12 10 16 16 H 1.48497 * 109.47400 * 209.99942 * 14 12 10 17 17 H 1.48499 * 109.47276 * 330.00475 * 14 12 10 18 18 C 1.34780 * 119.99696 * 180.02562 * 2 1 3 19 19 O 1.21548 * 120.00066 * 184.39873 * 18 2 1 20 20 C 1.47832 * 119.99912 * 4.39667 * 18 2 1 21 21 C 1.39945 * 120.94058 * 330.14949 * 20 18 2 22 22 N 1.32157 * 118.92245 * 179.73684 * 21 20 18 23 23 C 1.31868 * 120.96363 * 0.52679 * 22 21 20 24 24 C 1.50705 * 118.94893 * 179.72055 * 23 22 21 25 25 C 1.53000 * 117.49597 * 8.64782 * 24 23 22 26 26 C 1.52993 * 117.50191 * 300.02500 * 24 23 22 27 27 N 1.31866 * 122.10130 * 359.74671 * 23 22 21 28 28 C 1.32155 * 120.96575 * 359.97354 * 27 23 22 29 29 H 1.09005 * 109.47326 * 272.21213 * 1 2 3 30 30 H 1.09005 * 109.47266 * 32.21194 * 1 2 3 31 31 H 1.08996 * 109.47884 * 152.21129 * 1 2 3 32 32 H 1.09003 * 109.47499 * 30.00239 * 3 2 1 33 33 H 1.09004 * 109.47199 * 150.00183 * 3 2 1 34 34 H 1.08999 * 109.47130 * 299.99980 * 4 3 2 35 35 H 1.09000 * 109.47160 * 60.00374 * 4 3 2 36 36 H 1.00897 * 110.99783 * 56.04452 * 5 4 3 37 37 H 1.09001 * 109.46722 * 300.00177 * 6 5 4 38 38 H 1.08993 * 109.47144 * 59.99531 * 6 5 4 39 39 H 0.97006 * 119.99849 * 0.02562 * 9 7 6 40 40 H 0.97001 * 120.00142 * 179.97438 * 13 12 10 41 41 H 1.08001 * 120.54231 * 359.96746 * 21 20 18 42 42 H 1.08994 * 115.54831 * 154.34768 * 24 23 22 43 43 H 1.08996 * 117.50231 * 359.97438 * 25 24 23 44 44 H 1.09005 * 117.49830 * 145.02164 * 25 24 23 45 45 H 1.08999 * 117.50117 * 214.98185 * 26 24 23 46 46 H 1.09008 * 117.49644 * 359.97438 * 26 24 23 47 47 H 1.07994 * 120.53711 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1876 2.9823 -1.4424 6 6 3.4503 3.4385 -2.8138 7 6 4.2047 4.7425 -2.7736 8 8 4.4945 5.2427 -1.7074 9 7 4.5573 5.3527 -3.9224 10 6 5.2431 6.5393 -3.8858 11 1 5.5012 6.9847 -2.9364 12 6 5.6072 7.1682 -5.0701 13 7 5.2936 6.6259 -6.2253 14 14 6.5410 8.7852 -5.0202 15 1 8.0009 8.5135 -5.0063 16 1 6.1991 9.5915 -6.2194 17 1 6.1656 9.5361 -3.7953 18 6 2.1388 -1.1673 -0.0005 19 8 3.3516 -1.1689 0.0802 20 6 1.4029 -2.4455 -0.0992 21 6 0.1048 -2.5695 0.4087 22 7 -0.5183 -3.7293 0.2943 23 6 0.0694 -4.7616 -0.2783 24 6 -0.6808 -6.0648 -0.3790 25 6 -2.1607 -6.0597 0.0093 26 6 -1.1315 -6.7232 0.9264 27 7 1.2928 -4.6902 -0.7652 28 6 1.9868 -3.5675 -0.6983 29 1 -0.3634 0.0397 1.0269 30 1 -0.3634 0.8695 -0.5478 31 1 -0.3635 -0.9091 -0.4791 32 1 1.6085 2.0284 0.5139 33 1 3.1500 1.1383 0.5138 34 1 3.0416 0.9507 -1.9564 35 1 1.5001 1.8408 -1.9563 36 1 4.0451 2.9042 -0.9164 37 1 4.0457 2.6907 -3.3377 38 1 2.5047 3.5814 -3.3366 39 1 4.3252 4.9528 -4.7751 40 1 5.5474 7.0651 -7.0521 41 1 -0.3814 -1.7299 0.8832 42 1 -0.3765 -6.7206 -1.1946 43 1 -2.5916 -5.1140 0.3379 44 1 -2.8303 -6.7124 -0.5509 45 1 -1.1238 -7.8123 0.9697 46 1 -0.8849 -6.2140 1.8582 47 1 2.9884 -3.5169 -1.0989 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481288635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:08:20 Heat of formation + Delta-G solvation = 32.701670 kcal Electronic energy + Delta-G solvation = -28636.193452 eV Core-core repulsion = 24435.224379 eV Total energy + Delta-G solvation = -4200.969073 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.95018 -40.05725 -38.30054 -37.53538 -36.62826 -35.32864 -34.25704 -33.82922 -32.62995 -31.23699 -29.84621 -27.67551 -26.76100 -25.54146 -25.01486 -23.96888 -22.86602 -22.47349 -21.79139 -20.32195 -19.22983 -18.64796 -17.89498 -17.64052 -17.45105 -16.57645 -16.37952 -15.81615 -15.69464 -15.55478 -15.04487 -14.84724 -14.71583 -14.46535 -14.25225 -14.00935 -13.74830 -13.54461 -13.35986 -13.19569 -12.83151 -12.47352 -12.28224 -12.14521 -12.11207 -11.94725 -11.56225 -11.50849 -11.40929 -11.31837 -11.17207 -11.02712 -11.00295 -10.39210 -10.33015 -10.21765 -9.83075 -9.79208 -9.51027 -9.15920 -8.48103 -8.11349 -7.96376 -6.41722 -3.82600 -0.07956 0.49205 2.23329 2.44110 2.97775 3.15548 3.18165 3.26826 3.32877 3.41221 3.61632 3.87110 3.90582 3.93513 4.11981 4.29206 4.33085 4.40651 4.45224 4.47149 4.55069 4.78599 4.79697 4.88512 5.09254 5.13567 5.13996 5.17293 5.18253 5.26265 5.29324 5.41867 5.54279 5.65592 5.67864 5.72866 5.78824 5.80955 5.96044 6.05855 6.25834 6.31922 6.84889 7.13028 7.47496 7.55290 7.58572 7.66086 8.06094 8.61002 9.17741 9.53992 10.05323 10.76024 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.029914 B = 0.001463 C = 0.001445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.785755 B =19140.149050 C =19371.182984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.605 5.605 3 C 0.117 3.883 4 C 0.045 3.955 5 N -0.666 5.666 6 C 0.053 3.947 7 C 0.441 3.559 8 O -0.583 6.583 9 N -0.563 5.563 10 C -0.300 4.300 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.269 1.269 18 C 0.568 3.432 19 O -0.522 6.522 20 C -0.248 4.248 21 C 0.171 3.829 22 N -0.520 5.520 23 C 0.367 3.633 24 C -0.110 4.110 25 C -0.151 4.151 26 C -0.153 4.153 27 N -0.516 5.516 28 C 0.212 3.788 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.030 0.970 35 H 0.071 0.929 36 H 0.352 0.648 37 H 0.044 0.956 38 H 0.086 0.914 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.190 0.810 42 H 0.132 0.868 43 H 0.111 0.889 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.097 0.903 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.977 -25.749 11.139 32.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.338 5.338 3 C -0.006 4.006 4 C -0.086 4.086 5 N -0.299 5.299 6 C -0.080 4.080 7 C 0.226 3.774 8 O -0.467 6.467 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C 0.354 3.646 19 O -0.398 6.398 20 C -0.256 4.256 21 C 0.005 3.995 22 N -0.234 5.234 23 C 0.102 3.898 24 C -0.130 4.130 25 C -0.188 4.188 26 C -0.191 4.191 27 N -0.229 5.229 28 C 0.045 3.955 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.171 0.829 37 H 0.062 0.938 38 H 0.104 0.896 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.207 0.793 42 H 0.150 0.850 43 H 0.130 0.870 44 H 0.121 0.879 45 H 0.124 0.876 46 H 0.115 0.885 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -17.141 -25.794 11.697 33.105 hybrid contribution 1.488 0.849 -1.026 1.997 sum -15.654 -24.945 10.671 31.323 Atomic orbital electron populations 1.22489 0.79584 1.04295 1.02208 1.47667 1.07093 1.06023 1.73047 1.21513 0.98488 0.83115 0.97456 1.22258 0.99186 0.90758 0.96353 1.60006 1.28445 1.27618 1.13842 1.21655 1.00253 0.96177 0.89937 1.19775 0.85240 0.87308 0.85062 1.90522 1.59316 1.67242 1.29625 1.41857 1.49948 1.21425 1.06756 1.19714 1.30909 0.97756 0.94571 0.87883 1.25263 0.98148 0.99883 0.94624 1.69612 1.47035 1.40178 0.97494 0.85849 0.79417 0.81135 0.77839 1.20415 1.20925 1.19382 1.17846 0.86920 0.82891 0.76910 1.90840 1.13138 1.86890 1.48922 1.21732 0.98274 0.97674 1.07898 1.24311 0.89563 0.95214 0.90459 1.68240 1.37771 0.99892 1.17463 1.22437 0.87325 0.93322 0.86714 1.20728 0.97194 0.93106 1.01983 1.23057 0.89942 1.03612 1.02225 1.23009 1.02547 1.00325 0.93196 1.68296 1.08003 1.27001 1.19555 1.23488 0.98855 0.85326 0.87787 0.91278 0.89750 0.90209 0.88775 0.89204 0.95140 0.91023 0.82877 0.93794 0.89613 0.77459 0.91874 0.79349 0.84980 0.87028 0.87904 0.87644 0.88454 0.80189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.29 8.79 59.85 0.53 0.81 16 2 N -0.61 -5.34 2.87 -182.70 -0.52 -5.87 16 3 C 0.12 1.22 5.71 -4.05 -0.02 1.19 16 4 C 0.05 0.56 6.01 -3.82 -0.02 0.53 16 5 N -0.67 -10.70 6.13 -115.06 -0.70 -11.40 16 6 C 0.05 0.94 6.17 -4.98 -0.03 0.91 16 7 C 0.44 10.50 7.82 -10.99 -0.09 10.41 16 8 O -0.58 -15.91 15.78 5.55 0.09 -15.83 16 9 N -0.56 -14.40 5.29 -10.97 -0.06 -14.45 16 10 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 11 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -24.64 13.05 55.50 0.72 -23.92 16 14 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 18 C 0.57 6.12 7.49 -12.33 -0.09 6.03 16 19 O -0.52 -7.54 16.34 5.32 0.09 -7.45 16 20 C -0.25 -2.25 5.53 -104.69 -0.58 -2.83 16 21 C 0.17 1.25 8.78 -16.77 -0.15 1.11 16 22 N -0.52 -4.36 9.32 -10.39 -0.10 -4.46 16 23 C 0.37 3.30 7.31 -157.07 -1.15 2.15 16 24 C -0.11 -0.72 6.23 -91.77 -0.57 -1.30 16 25 C -0.15 -0.74 10.01 -26.73 -0.27 -1.01 16 26 C -0.15 -0.77 10.23 -26.74 -0.27 -1.04 16 27 N -0.52 -5.16 10.32 -10.39 -0.11 -5.27 16 28 C 0.21 2.03 10.90 -16.77 -0.18 1.85 16 29 H 0.07 0.21 7.38 -51.93 -0.38 -0.17 16 30 H 0.08 0.38 8.09 -51.93 -0.42 -0.04 16 31 H 0.08 0.36 4.79 -51.93 -0.25 0.12 16 32 H 0.09 0.88 8.07 -51.93 -0.42 0.46 16 33 H 0.09 1.08 7.37 -51.93 -0.38 0.70 16 34 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.35 5.94 8.43 -39.29 -0.33 5.61 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 40 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.19 0.84 4.68 -52.49 -0.25 0.59 16 42 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.11 0.63 7.53 -51.93 -0.39 0.24 16 44 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 47 H 0.18 1.54 7.99 -52.49 -0.42 1.12 16 LS Contribution 398.96 15.07 6.01 6.01 Total: -1.00 -34.84 398.96 -9.20 -44.04 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -6.46 Total: 11.73 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: -3.14 Total: 10.75 kcal Atomic # 7 Polarization: -64.60 SS G_CDS: -0.77 Total: -65.37 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: 0.17 Total: -23.28 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.84 -9.20 -44.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481288635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.737 kcal (2) G-P(sol) polarization free energy of solvation -34.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds