Wall clock time and date at job start Wed Apr 1 2020 06:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46492 * 120.00169 * 2 1 4 4 C 1.53002 * 109.47289 * 270.00140 * 3 2 1 5 5 N 1.46904 * 109.47057 * 180.02562 * 4 3 2 6 6 C 1.46900 * 111.00088 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47429 * 180.02562 * 6 5 4 8 8 O 1.21290 * 119.99674 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00255 * 179.97438 * 7 6 5 10 10 C 1.37095 * 120.00211 * 179.97438 * 9 7 6 11 11 H 1.08000 * 119.99977 * 0.02562 * 10 9 7 12 12 C 1.38949 * 120.00310 * 179.97438 * 10 9 7 13 13 N 1.31407 * 119.99785 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00165 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47091 * 90.00431 * 14 12 10 16 16 H 1.48497 * 109.47400 * 209.99942 * 14 12 10 17 17 H 1.48499 * 109.47276 * 330.00475 * 14 12 10 18 18 C 1.34780 * 119.99696 * 180.02562 * 2 1 3 19 19 O 1.21548 * 120.00066 * 184.39873 * 18 2 1 20 20 C 1.47832 * 119.99912 * 4.39667 * 18 2 1 21 21 C 1.39945 * 120.94058 * 330.14949 * 20 18 2 22 22 N 1.32157 * 118.92245 * 179.73684 * 21 20 18 23 23 C 1.31868 * 120.96363 * 0.52679 * 22 21 20 24 24 C 1.50705 * 118.94893 * 179.72055 * 23 22 21 25 25 C 1.53000 * 117.49597 * 8.64782 * 24 23 22 26 26 C 1.52993 * 117.50191 * 300.02500 * 24 23 22 27 27 N 1.31866 * 122.10130 * 359.74671 * 23 22 21 28 28 C 1.32155 * 120.96575 * 359.97354 * 27 23 22 29 29 H 1.09005 * 109.47326 * 272.21213 * 1 2 3 30 30 H 1.09005 * 109.47266 * 32.21194 * 1 2 3 31 31 H 1.08996 * 109.47884 * 152.21129 * 1 2 3 32 32 H 1.09003 * 109.47499 * 30.00239 * 3 2 1 33 33 H 1.09004 * 109.47199 * 150.00183 * 3 2 1 34 34 H 1.08999 * 109.47130 * 299.99980 * 4 3 2 35 35 H 1.09000 * 109.47160 * 60.00374 * 4 3 2 36 36 H 1.00897 * 110.99783 * 56.04452 * 5 4 3 37 37 H 1.09001 * 109.46722 * 300.00177 * 6 5 4 38 38 H 1.08993 * 109.47144 * 59.99531 * 6 5 4 39 39 H 0.97006 * 119.99849 * 0.02562 * 9 7 6 40 40 H 0.97001 * 120.00142 * 179.97438 * 13 12 10 41 41 H 1.08001 * 120.54231 * 359.96746 * 21 20 18 42 42 H 1.08994 * 115.54831 * 154.34768 * 24 23 22 43 43 H 1.08996 * 117.50231 * 359.97438 * 25 24 23 44 44 H 1.09005 * 117.49830 * 145.02164 * 25 24 23 45 45 H 1.08999 * 117.50117 * 214.98185 * 26 24 23 46 46 H 1.09008 * 117.49644 * 359.97438 * 26 24 23 47 47 H 1.07994 * 120.53711 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1876 2.9823 -1.4424 6 6 3.4503 3.4385 -2.8138 7 6 4.2047 4.7425 -2.7736 8 8 4.4945 5.2427 -1.7074 9 7 4.5573 5.3527 -3.9224 10 6 5.2431 6.5393 -3.8858 11 1 5.5012 6.9847 -2.9364 12 6 5.6072 7.1682 -5.0701 13 7 5.2936 6.6259 -6.2253 14 14 6.5410 8.7852 -5.0202 15 1 8.0009 8.5135 -5.0063 16 1 6.1991 9.5915 -6.2194 17 1 6.1656 9.5361 -3.7953 18 6 2.1388 -1.1673 -0.0005 19 8 3.3516 -1.1689 0.0802 20 6 1.4029 -2.4455 -0.0992 21 6 0.1048 -2.5695 0.4087 22 7 -0.5183 -3.7293 0.2943 23 6 0.0694 -4.7616 -0.2783 24 6 -0.6808 -6.0648 -0.3790 25 6 -2.1607 -6.0597 0.0093 26 6 -1.1315 -6.7232 0.9264 27 7 1.2928 -4.6902 -0.7652 28 6 1.9868 -3.5675 -0.6983 29 1 -0.3634 0.0397 1.0269 30 1 -0.3634 0.8695 -0.5478 31 1 -0.3635 -0.9091 -0.4791 32 1 1.6085 2.0284 0.5139 33 1 3.1500 1.1383 0.5138 34 1 3.0416 0.9507 -1.9564 35 1 1.5001 1.8408 -1.9563 36 1 4.0451 2.9042 -0.9164 37 1 4.0457 2.6907 -3.3377 38 1 2.5047 3.5814 -3.3366 39 1 4.3252 4.9528 -4.7751 40 1 5.5474 7.0651 -7.0521 41 1 -0.3814 -1.7299 0.8832 42 1 -0.3765 -6.7206 -1.1946 43 1 -2.5916 -5.1140 0.3379 44 1 -2.8303 -6.7124 -0.5509 45 1 -1.1238 -7.8123 0.9697 46 1 -0.8849 -6.2140 1.8582 47 1 2.9884 -3.5169 -1.0989 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481288635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:08:19 Heat of formation + Delta-G solvation = 6.967605 kcal Electronic energy + Delta-G solvation = -28637.309365 eV Core-core repulsion = 24435.224379 eV Total energy + Delta-G solvation = -4202.084985 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -42.61421 -40.84330 -40.15711 -38.01187 -37.62076 -36.47534 -35.81850 -34.92950 -33.41231 -33.23463 -30.88446 -28.41584 -27.91331 -26.72055 -25.64207 -25.46915 -23.46957 -23.23300 -22.39766 -21.30313 -20.87527 -19.92145 -19.30916 -18.34094 -18.05140 -17.92517 -17.37209 -17.01760 -16.68726 -16.51227 -16.23610 -15.93227 -15.75127 -15.43022 -15.32569 -15.24309 -14.85130 -14.80250 -14.35336 -14.12005 -13.85876 -13.54450 -13.41634 -13.31856 -12.96503 -12.93831 -12.77484 -12.72338 -12.42654 -12.36016 -12.13332 -12.12015 -11.99240 -11.87470 -11.51834 -11.43157 -11.14244 -10.49564 -10.42248 -10.40574 -10.03188 -9.86794 -9.45248 -8.47723 -5.96780 -0.75152 -0.15835 1.37794 1.41690 1.44343 1.54771 1.70613 2.02914 2.28997 2.38460 2.59298 2.83262 2.93047 3.10914 3.19346 3.23706 3.31386 3.52665 3.73989 3.84570 3.91362 3.96931 4.06547 4.08893 4.11276 4.28100 4.31258 4.44554 4.47440 4.52945 4.55867 4.57421 4.76943 4.79555 4.81551 4.91340 4.92076 5.06645 5.16808 5.29197 5.31895 5.40101 5.66828 5.81102 6.04186 6.12619 6.27371 6.58192 6.81941 6.86147 7.11028 7.54001 8.09031 8.69658 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.029914 B = 0.001463 C = 0.001445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.785755 B =19140.149050 C =19371.182984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.599 5.599 3 C 0.123 3.877 4 C 0.053 3.947 5 N -0.674 5.674 6 C 0.066 3.934 7 C 0.437 3.563 8 O -0.622 6.622 9 N -0.572 5.572 10 C -0.336 4.336 11 H 0.080 0.920 12 C -0.012 4.012 13 N -0.920 5.920 14 Si 0.994 3.006 15 H -0.272 1.272 16 H -0.270 1.270 17 H -0.272 1.272 18 C 0.567 3.433 19 O -0.569 6.569 20 C -0.256 4.256 21 C 0.183 3.817 22 N -0.524 5.524 23 C 0.359 3.641 24 C -0.130 4.130 25 C -0.139 4.139 26 C -0.146 4.146 27 N -0.536 5.536 28 C 0.202 3.798 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.112 0.888 33 H 0.069 0.931 34 H 0.020 0.980 35 H 0.089 0.911 36 H 0.344 0.656 37 H 0.060 0.940 38 H 0.109 0.891 39 H 0.396 0.604 40 H 0.278 0.722 41 H 0.221 0.779 42 H 0.137 0.863 43 H 0.105 0.895 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.088 0.912 47 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.159 -26.237 11.192 34.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.330 5.330 3 C 0.000 4.000 4 C -0.077 4.077 5 N -0.307 5.307 6 C -0.066 4.066 7 C 0.225 3.775 8 O -0.508 6.508 9 N -0.209 5.209 10 C -0.465 4.465 11 H 0.098 0.902 12 C -0.212 4.212 13 N -0.561 5.561 14 Si 0.817 3.183 15 H -0.197 1.197 16 H -0.195 1.195 17 H -0.197 1.197 18 C 0.355 3.645 19 O -0.449 6.449 20 C -0.263 4.263 21 C 0.017 3.983 22 N -0.238 5.238 23 C 0.094 3.906 24 C -0.150 4.150 25 C -0.176 4.176 26 C -0.184 4.184 27 N -0.249 5.249 28 C 0.036 3.964 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.130 0.870 33 H 0.088 0.912 34 H 0.038 0.962 35 H 0.108 0.892 36 H 0.163 0.837 37 H 0.078 0.922 38 H 0.127 0.873 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.237 0.763 42 H 0.155 0.845 43 H 0.124 0.876 44 H 0.140 0.860 45 H 0.142 0.858 46 H 0.107 0.893 47 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -19.381 -26.305 11.731 34.716 hybrid contribution 2.097 0.947 -1.015 2.515 sum -17.284 -25.359 10.716 32.506 Atomic orbital electron populations 1.22803 0.76871 1.05249 1.04369 1.47708 1.08663 1.04779 1.71824 1.21361 0.98354 0.84188 0.96116 1.22283 0.99066 0.88652 0.97743 1.60026 1.28243 1.29798 1.12601 1.21520 1.00538 0.93034 0.91520 1.20811 0.84224 0.88619 0.83875 1.90490 1.60643 1.68781 1.30916 1.41925 1.50285 1.21205 1.07521 1.19692 1.33130 0.99487 0.94240 0.90226 1.26049 0.98374 1.02826 0.93935 1.69671 1.47169 1.41317 0.97940 0.84914 0.78222 0.77111 0.78010 1.19707 1.19464 1.19676 1.18084 0.86432 0.83792 0.76212 1.90815 1.15173 1.87565 1.51308 1.21586 0.99035 0.96703 1.09001 1.24806 0.88676 0.95685 0.89176 1.68356 1.37665 1.00060 1.17671 1.22954 0.87166 0.94383 0.86053 1.20892 0.98360 0.92569 1.03195 1.23123 0.89159 1.03616 1.01712 1.23082 1.01956 1.01263 0.92087 1.68334 1.08740 1.27198 1.20625 1.23579 0.99073 0.85717 0.88045 0.88443 0.88491 0.89542 0.87012 0.91209 0.96212 0.89218 0.83749 0.92191 0.87314 0.76976 0.91272 0.76287 0.84545 0.87649 0.85985 0.85838 0.89330 0.80293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.33 8.79 127.77 1.12 1.45 16 2 N -0.60 -9.57 2.87 -850.21 -2.44 -12.01 16 3 C 0.12 2.41 5.71 86.38 0.49 2.91 16 4 C 0.05 1.22 6.01 86.30 0.52 1.74 16 5 N -0.67 -21.12 6.13 -517.93 -3.17 -24.29 16 6 C 0.07 2.30 6.17 85.56 0.53 2.83 16 7 C 0.44 21.02 7.82 87.66 0.69 21.70 16 8 O -0.62 -34.70 15.78 -3.06 -0.05 -34.75 16 9 N -0.57 -29.65 5.29 -307.00 -1.62 -31.27 16 10 C -0.34 -19.24 9.68 84.04 0.81 -18.43 16 11 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 12 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 13 N -0.92 -49.85 13.05 21.66 0.28 -49.57 16 14 Si 0.99 43.08 29.55 68.60 2.03 45.11 16 15 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 16 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 18 C 0.57 12.04 7.49 86.78 0.65 12.69 16 19 O -0.57 -17.01 16.34 -3.87 -0.06 -17.08 16 20 C -0.26 -4.50 5.53 -19.91 -0.11 -4.61 16 21 C 0.18 2.35 8.78 85.06 0.75 3.10 16 22 N -0.52 -8.01 9.32 -186.79 -1.74 -9.75 16 23 C 0.36 6.21 7.31 138.71 1.01 7.22 16 24 C -0.13 -1.57 6.23 -11.54 -0.07 -1.64 16 25 C -0.14 -1.09 10.01 30.59 0.31 -0.78 16 26 C -0.15 -1.24 10.23 30.59 0.31 -0.92 16 27 N -0.54 -10.79 10.32 -186.79 -1.93 -12.72 16 28 C 0.20 3.97 10.90 85.06 0.93 4.90 16 29 H 0.10 0.18 7.38 -2.38 -0.02 0.16 16 30 H 0.10 0.50 8.09 -2.38 -0.02 0.48 16 31 H 0.09 0.52 4.79 -2.39 -0.01 0.50 16 32 H 0.11 1.83 8.07 -2.39 -0.02 1.81 16 33 H 0.07 1.69 7.37 -2.39 -0.02 1.67 16 34 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.34 11.72 8.43 -89.70 -0.76 10.96 16 37 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 39 H 0.40 19.48 7.90 -92.70 -0.73 18.75 16 40 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 41 H 0.22 1.24 4.68 -2.91 -0.01 1.23 16 42 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.11 0.99 7.53 -2.39 -0.02 0.97 16 44 H 0.12 0.49 8.14 -2.38 -0.02 0.47 16 45 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 47 H 0.18 3.33 7.99 -2.91 -0.02 3.31 16 Total: -1.00 -77.03 398.96 -0.76 -77.79 By element: Atomic # 1 Polarization: 37.02 SS G_CDS: -0.45 Total: 36.57 kcal Atomic # 6 Polarization: 23.56 SS G_CDS: 8.40 Total: 31.97 kcal Atomic # 7 Polarization: -128.99 SS G_CDS: -10.62 Total: -139.61 kcal Atomic # 8 Polarization: -51.71 SS G_CDS: -0.11 Total: -51.82 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -77.03 -0.76 -77.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481288635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.758 kcal (2) G-P(sol) polarization free energy of solvation -77.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds