Wall clock time and date at job start Wed Apr 1 2020 05:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34260 * 125.75374 * 2 1 4 4 C 1.38048 * 107.41662 * 180.02562 * 3 2 1 5 5 C 1.47423 * 126.41515 * 179.97438 * 4 3 2 6 6 O 1.21613 * 119.99801 * 342.26387 * 5 4 3 7 7 N 1.34777 * 120.00509 * 162.26184 * 5 4 3 8 8 C 1.47145 * 120.68933 * 173.66178 * 7 5 4 9 9 C 1.53889 * 108.09179 * 132.59126 * 8 7 5 10 10 H 1.09004 * 112.12174 * 182.03401 * 9 8 7 11 11 C 1.54542 * 107.81052 * 306.66964 * 9 8 7 12 12 C 1.55972 * 105.08685 * 88.88652 * 11 9 8 13 13 C 1.54548 * 104.18405 * 0.03526 * 12 11 9 14 14 H 1.08996 * 112.20820 * 146.86734 * 13 12 11 15 15 C 1.47155 * 120.67663 * 353.64449 * 7 5 4 16 16 N 1.48729 * 104.88000 * 24.77816 * 13 12 11 17 17 C 1.46901 * 110.99886 * 78.10837 * 16 13 12 18 18 C 1.50704 * 109.47227 * 183.38324 * 17 16 13 19 19 O 1.21291 * 119.99944 * 351.53359 * 18 17 16 20 20 N 1.34773 * 119.99843 * 171.54218 * 18 17 16 21 21 C 1.37099 * 119.99664 * 179.97438 * 20 18 17 22 22 H 1.07993 * 120.00259 * 359.97438 * 21 20 18 23 23 C 1.38955 * 119.99846 * 179.97438 * 21 20 18 24 24 N 1.31412 * 120.00083 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00017 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.47260 * 89.99441 * 25 23 21 27 27 H 1.48497 * 109.47206 * 209.99903 * 25 23 21 28 28 H 1.48509 * 109.46920 * 329.99434 * 25 23 21 29 29 C 1.41291 * 107.16865 * 0.23440 * 4 3 2 30 30 N 1.30442 * 108.02384 * 359.59365 * 29 4 3 31 31 H 1.08999 * 109.47347 * 90.00827 * 1 2 3 32 32 H 1.09003 * 109.47274 * 210.00491 * 1 2 3 33 33 H 1.09005 * 109.47286 * 330.00621 * 1 2 3 34 34 H 1.07994 * 126.29434 * 0.02562 * 3 2 1 35 35 H 1.08995 * 109.74980 * 252.26517 * 8 7 5 36 36 H 1.09005 * 109.74144 * 12.93679 * 8 7 5 37 37 H 1.08999 * 110.34826 * 207.81790 * 11 9 8 38 38 H 1.08997 * 110.34489 * 329.98717 * 11 9 8 39 39 H 1.09004 * 110.89641 * 241.32859 * 12 11 9 40 40 H 1.09000 * 110.52886 * 118.55872 * 12 11 9 41 41 H 1.09004 * 109.74976 * 347.01839 * 15 7 5 42 42 H 1.09004 * 109.74696 * 107.75132 * 15 7 5 43 43 H 1.08993 * 109.47436 * 303.38290 * 17 16 13 44 44 H 1.09002 * 109.46734 * 63.38150 * 17 16 13 45 45 H 0.96997 * 120.00222 * 359.97438 * 20 18 17 46 46 H 0.96997 * 120.00274 * 180.02562 * 24 23 21 47 47 H 1.08001 * 125.98383 * 179.74494 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2494 1.0896 0.0000 4 6 3.5598 0.6553 -0.0006 5 6 4.7638 1.5061 -0.0013 6 8 4.6812 2.6762 -0.3223 7 7 5.9559 0.9872 0.3537 8 6 7.1883 1.7810 0.2265 9 6 7.9785 1.6509 1.5406 10 1 8.8920 2.2454 1.5309 11 6 7.0315 2.0310 2.7012 12 6 6.3285 0.6984 3.1047 13 6 6.9274 -0.3521 2.1423 14 1 7.0141 -1.3343 2.6068 15 6 6.0517 -0.3848 0.8771 16 7 8.2497 0.2020 1.7469 17 6 9.2443 -0.0009 2.8088 18 6 10.5457 0.6449 2.4083 19 8 10.6854 1.0824 1.2857 20 7 11.5545 0.7360 3.2974 21 6 12.7386 1.3230 2.9328 22 1 12.8632 1.7119 1.9331 23 6 13.7785 1.4174 3.8496 24 7 14.9133 1.9805 3.5004 25 14 13.5632 0.7440 5.5787 26 1 13.9924 -0.6773 5.6133 27 1 14.3915 1.5344 6.5244 28 1 12.1346 0.8395 5.9728 29 6 3.5310 -0.7574 -0.0065 30 7 2.2826 -1.1356 -0.0004 31 1 -0.3634 -0.0001 -1.0276 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3634 0.8901 0.5138 34 1 1.9166 2.1169 0.0004 35 1 7.7865 1.4022 -0.6021 36 1 6.9362 2.8268 0.0505 37 1 7.6017 2.4278 3.5412 38 1 6.2947 2.7608 2.3656 39 1 5.2499 0.7698 2.9641 40 1 6.5607 0.4414 4.1382 41 1 5.0570 -0.7540 1.1270 42 1 6.5088 -1.0330 0.1294 43 1 8.8850 0.4494 3.7341 44 1 9.4003 -1.0689 2.9612 45 1 11.4427 0.3863 4.1952 46 1 15.6393 2.0461 4.1402 47 1 4.3918 -1.4096 -0.0123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481375104.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:38 Heat of formation + Delta-G solvation = 60.300531 kcal Electronic energy + Delta-G solvation = -31251.848073 eV Core-core repulsion = 27052.075777 eV Total energy + Delta-G solvation = -4199.772296 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.85522 -40.77131 -38.74222 -37.80445 -34.82652 -33.96702 -33.67739 -31.77478 -31.59550 -31.03464 -30.56912 -28.19085 -27.40843 -25.88071 -24.73133 -23.85176 -22.48545 -21.56554 -20.60945 -20.26706 -19.39793 -18.90804 -18.20574 -17.55254 -16.52368 -16.30283 -16.01543 -15.83783 -15.73916 -14.96819 -14.89709 -14.64304 -14.59991 -14.04676 -13.90279 -13.71386 -13.58820 -13.34641 -13.16381 -13.09045 -12.95447 -12.51767 -12.47034 -12.35750 -12.10743 -11.94693 -11.41945 -11.34897 -11.23815 -11.03435 -10.82980 -10.74923 -10.59944 -10.41536 -9.98225 -9.93177 -9.82656 -9.53832 -9.03085 -8.78028 -8.40994 -8.19611 -8.16686 -6.31443 -3.82787 1.24901 1.87755 1.97671 2.99226 3.01573 3.06093 3.14534 3.30043 3.73425 3.87689 4.04253 4.09648 4.40123 4.47031 4.58985 4.62329 4.67539 4.73602 4.87264 4.89344 4.93394 5.06380 5.07754 5.15363 5.21712 5.28116 5.37158 5.48150 5.50931 5.63546 5.71067 5.78664 5.85547 5.87198 5.94790 5.99431 6.04531 6.06051 6.20310 6.29374 6.41819 6.60599 6.97341 7.09845 7.17150 7.48100 7.57897 8.14120 8.22970 8.59470 8.94835 9.42094 9.82414 10.81600 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.029125 B = 0.002325 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.146706 B =12040.984958 C =12372.977756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.366 5.366 3 C 0.124 3.876 4 C -0.287 4.287 5 C 0.594 3.406 6 O -0.554 6.554 7 N -0.598 5.598 8 C 0.131 3.869 9 C 0.054 3.946 10 H 0.125 0.875 11 C -0.148 4.148 12 C -0.143 4.143 13 C 0.043 3.957 14 H 0.104 0.896 15 C 0.104 3.896 16 N -0.477 5.477 17 C 0.032 3.968 18 C 0.452 3.548 19 O -0.559 6.559 20 N -0.590 5.590 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.069 3.931 30 N -0.298 5.298 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.187 0.813 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.050 0.950 44 H 0.092 0.908 45 H 0.370 0.630 46 H 0.273 0.727 47 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.728 -6.341 -0.898 29.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.145 5.145 3 C -0.027 4.027 4 C -0.302 4.302 5 C 0.383 3.617 6 O -0.433 6.433 7 N -0.330 5.330 8 C 0.009 3.991 9 C -0.055 4.055 10 H 0.143 0.857 11 C -0.187 4.187 12 C -0.182 4.182 13 C -0.067 4.067 14 H 0.122 0.878 15 C -0.020 4.020 16 N -0.199 5.199 17 C -0.100 4.100 18 C 0.237 3.763 19 O -0.441 6.441 20 N -0.230 5.230 21 C -0.433 4.433 22 H 0.138 0.862 23 C -0.162 4.162 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 C -0.118 4.118 30 N -0.118 5.118 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.204 0.796 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.118 0.882 42 H 0.098 0.902 43 H 0.068 0.932 44 H 0.110 0.890 45 H 0.202 0.798 46 H 0.084 0.916 47 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -29.174 -6.635 -2.275 30.005 hybrid contribution 0.324 0.474 2.383 2.451 sum -28.850 -6.161 0.108 29.501 Atomic orbital electron populations 1.21994 0.73508 1.04978 1.03946 1.48430 1.07232 1.03898 1.54918 1.22948 0.90065 0.93695 0.96007 1.20293 0.93541 0.93642 1.22763 1.17212 0.81835 0.86013 0.76595 1.90762 1.85631 1.16683 1.50252 1.47858 1.06683 1.14958 1.63519 1.21829 0.83170 0.96569 0.97579 1.23571 0.98389 0.89878 0.93640 0.85747 1.23165 0.98906 0.97582 0.99093 1.23100 1.00388 0.95445 0.99288 1.23494 0.89880 0.98899 0.94412 0.87842 1.22585 1.00287 0.83577 0.95524 1.65205 1.04341 1.11919 1.38422 1.22019 0.92771 1.01651 0.93539 1.19612 0.84995 0.85262 0.86407 1.90560 1.81951 1.51253 1.20334 1.42233 1.13801 1.54596 1.12365 1.19423 0.87788 1.34461 1.01580 0.86226 1.25042 0.95312 0.97469 0.98357 1.69619 1.03765 1.42967 1.35713 0.86681 0.78297 0.79827 0.84619 1.19612 1.20224 1.19580 1.24651 0.95361 0.94293 0.97512 1.77219 1.01950 1.07855 1.24812 0.90185 0.88829 0.89041 0.79594 0.90213 0.88984 0.91750 0.91077 0.91367 0.91767 0.88247 0.90182 0.93209 0.88978 0.79765 0.91622 0.78042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.33 11.44 59.84 0.68 1.01 16 2 N -0.37 -2.90 3.98 -67.60 -0.27 -3.17 16 3 C 0.12 1.09 11.34 -16.56 -0.19 0.90 16 4 C -0.29 -3.08 5.80 -105.07 -0.61 -3.69 16 5 C 0.59 7.90 7.67 -12.52 -0.10 7.81 16 6 O -0.55 -9.14 16.41 5.27 0.09 -9.05 16 7 N -0.60 -7.47 2.25 -172.80 -0.39 -7.86 16 8 C 0.13 1.91 5.92 -3.23 -0.02 1.89 16 9 C 0.05 0.84 3.13 -65.36 -0.20 0.64 16 10 H 0.12 2.36 6.03 -51.93 -0.31 2.05 16 11 C -0.15 -1.98 5.57 -24.33 -0.14 -2.12 16 12 C -0.14 -1.58 5.66 -24.33 -0.14 -1.72 16 13 C 0.04 0.47 3.62 -65.42 -0.24 0.24 16 14 H 0.10 0.94 8.10 -51.93 -0.42 0.51 16 15 C 0.10 1.03 4.40 -3.22 -0.01 1.02 16 16 N -0.48 -7.10 4.75 -214.12 -1.02 -8.12 16 17 C 0.03 0.51 5.32 -4.97 -0.03 0.48 16 18 C 0.45 9.87 7.16 -10.99 -0.08 9.79 16 19 O -0.56 -14.35 14.22 5.55 0.08 -14.27 16 20 N -0.59 -13.73 5.09 -10.96 -0.06 -13.79 16 21 C -0.30 -8.45 10.16 -14.93 -0.15 -8.60 16 22 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.56 13.96 55.50 0.77 -24.79 16 25 Si 0.88 19.19 27.74 -169.99 -4.71 14.48 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 27 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 28 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 29 C 0.07 0.64 9.71 -16.98 -0.16 0.48 16 30 N -0.30 -2.96 12.50 30.86 0.39 -2.57 16 31 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 34 H 0.19 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.09 1.40 7.07 -51.93 -0.37 1.04 16 37 H 0.06 0.89 8.11 -51.93 -0.42 0.46 16 38 H 0.07 0.98 7.84 -51.93 -0.41 0.57 16 39 H 0.07 0.73 7.84 -51.93 -0.41 0.32 16 40 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 41 H 0.10 0.80 3.99 -51.93 -0.21 0.59 16 42 H 0.08 0.77 8.09 -51.93 -0.42 0.34 16 43 H 0.05 0.72 7.01 -51.93 -0.36 0.36 16 44 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 45 H 0.37 7.59 5.76 -40.82 -0.24 7.35 16 46 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.20 1.44 5.52 -52.49 -0.29 1.15 16 LS Contribution 371.95 15.07 5.61 5.61 Total: -1.00 -35.94 371.95 -7.35 -43.30 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -6.36 Total: 11.11 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: -1.47 Total: 9.14 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: -0.57 Total: -60.30 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: 0.17 Total: -23.33 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.71 Total: 14.48 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.94 -7.35 -43.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481375104.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.597 kcal (2) G-P(sol) polarization free energy of solvation -35.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds