Wall clock time and date at job start Wed Apr 1 2020 05:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34260 * 125.75374 * 2 1 4 4 C 1.38048 * 107.41662 * 180.02562 * 3 2 1 5 5 C 1.47423 * 126.41515 * 179.97438 * 4 3 2 6 6 O 1.21613 * 119.99801 * 342.26387 * 5 4 3 7 7 N 1.34777 * 120.00509 * 162.26184 * 5 4 3 8 8 C 1.47145 * 120.68933 * 173.66178 * 7 5 4 9 9 C 1.53889 * 108.09179 * 132.59126 * 8 7 5 10 10 H 1.09004 * 112.12174 * 182.03401 * 9 8 7 11 11 C 1.54542 * 107.81052 * 306.66964 * 9 8 7 12 12 C 1.55972 * 105.08685 * 88.88652 * 11 9 8 13 13 C 1.54548 * 104.18405 * 0.03526 * 12 11 9 14 14 H 1.08996 * 112.20820 * 146.86734 * 13 12 11 15 15 C 1.47155 * 120.67663 * 353.64449 * 7 5 4 16 16 N 1.48729 * 104.88000 * 24.77816 * 13 12 11 17 17 C 1.46901 * 110.99886 * 78.10837 * 16 13 12 18 18 C 1.50704 * 109.47227 * 183.38324 * 17 16 13 19 19 O 1.21291 * 119.99944 * 351.53359 * 18 17 16 20 20 N 1.34773 * 119.99843 * 171.54218 * 18 17 16 21 21 C 1.37099 * 119.99664 * 179.97438 * 20 18 17 22 22 H 1.07993 * 120.00259 * 359.97438 * 21 20 18 23 23 C 1.38955 * 119.99846 * 179.97438 * 21 20 18 24 24 N 1.31412 * 120.00083 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00017 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.47260 * 89.99441 * 25 23 21 27 27 H 1.48497 * 109.47206 * 209.99903 * 25 23 21 28 28 H 1.48509 * 109.46920 * 329.99434 * 25 23 21 29 29 C 1.41291 * 107.16865 * 0.23440 * 4 3 2 30 30 N 1.30442 * 108.02384 * 359.59365 * 29 4 3 31 31 H 1.08999 * 109.47347 * 90.00827 * 1 2 3 32 32 H 1.09003 * 109.47274 * 210.00491 * 1 2 3 33 33 H 1.09005 * 109.47286 * 330.00621 * 1 2 3 34 34 H 1.07994 * 126.29434 * 0.02562 * 3 2 1 35 35 H 1.08995 * 109.74980 * 252.26517 * 8 7 5 36 36 H 1.09005 * 109.74144 * 12.93679 * 8 7 5 37 37 H 1.08999 * 110.34826 * 207.81790 * 11 9 8 38 38 H 1.08997 * 110.34489 * 329.98717 * 11 9 8 39 39 H 1.09004 * 110.89641 * 241.32859 * 12 11 9 40 40 H 1.09000 * 110.52886 * 118.55872 * 12 11 9 41 41 H 1.09004 * 109.74976 * 347.01839 * 15 7 5 42 42 H 1.09004 * 109.74696 * 107.75132 * 15 7 5 43 43 H 1.08993 * 109.47436 * 303.38290 * 17 16 13 44 44 H 1.09002 * 109.46734 * 63.38150 * 17 16 13 45 45 H 0.96997 * 120.00222 * 359.97438 * 20 18 17 46 46 H 0.96997 * 120.00274 * 180.02562 * 24 23 21 47 47 H 1.08001 * 125.98383 * 179.74494 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2494 1.0896 0.0000 4 6 3.5598 0.6553 -0.0006 5 6 4.7638 1.5061 -0.0013 6 8 4.6812 2.6762 -0.3223 7 7 5.9559 0.9872 0.3537 8 6 7.1883 1.7810 0.2265 9 6 7.9785 1.6509 1.5406 10 1 8.8920 2.2454 1.5309 11 6 7.0315 2.0310 2.7012 12 6 6.3285 0.6984 3.1047 13 6 6.9274 -0.3521 2.1423 14 1 7.0141 -1.3343 2.6068 15 6 6.0517 -0.3848 0.8771 16 7 8.2497 0.2020 1.7469 17 6 9.2443 -0.0009 2.8088 18 6 10.5457 0.6449 2.4083 19 8 10.6854 1.0824 1.2857 20 7 11.5545 0.7360 3.2974 21 6 12.7386 1.3230 2.9328 22 1 12.8632 1.7119 1.9331 23 6 13.7785 1.4174 3.8496 24 7 14.9133 1.9805 3.5004 25 14 13.5632 0.7440 5.5787 26 1 13.9924 -0.6773 5.6133 27 1 14.3915 1.5344 6.5244 28 1 12.1346 0.8395 5.9728 29 6 3.5310 -0.7574 -0.0065 30 7 2.2826 -1.1356 -0.0004 31 1 -0.3634 -0.0001 -1.0276 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3634 0.8901 0.5138 34 1 1.9166 2.1169 0.0004 35 1 7.7865 1.4022 -0.6021 36 1 6.9362 2.8268 0.0505 37 1 7.6017 2.4278 3.5412 38 1 6.2947 2.7608 2.3656 39 1 5.2499 0.7698 2.9641 40 1 6.5607 0.4414 4.1382 41 1 5.0570 -0.7540 1.1270 42 1 6.5088 -1.0330 0.1294 43 1 8.8850 0.4494 3.7341 44 1 9.4003 -1.0689 2.9612 45 1 11.4427 0.3863 4.1952 46 1 15.6393 2.0461 4.1402 47 1 4.3918 -1.4096 -0.0123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481375104.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:37 Heat of formation + Delta-G solvation = 31.772648 kcal Electronic energy + Delta-G solvation = -31253.085135 eV Core-core repulsion = 27052.075777 eV Total energy + Delta-G solvation = -4201.009358 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.62365 -41.77109 -40.16890 -39.21055 -36.10903 -35.66739 -34.36245 -33.73046 -32.65603 -32.21351 -31.30615 -29.25754 -28.12566 -27.30365 -25.69273 -25.42556 -23.38196 -22.23044 -21.65978 -21.29583 -21.09446 -20.25977 -19.69160 -18.45028 -17.66170 -17.38159 -17.22666 -16.81199 -16.68683 -16.42523 -16.04872 -15.87084 -15.60911 -15.18208 -15.04922 -14.96987 -14.79711 -14.57170 -14.31475 -13.92871 -13.92183 -13.61276 -13.47937 -13.41972 -13.36151 -13.26886 -12.89085 -12.41586 -12.32062 -12.20469 -12.10405 -11.96000 -11.88935 -11.82341 -11.44155 -11.40245 -10.87957 -10.55243 -10.32531 -10.20855 -9.87322 -9.62176 -9.29620 -8.39239 -5.99600 0.54717 1.13097 1.30593 1.36571 1.45025 1.46199 1.99477 2.03245 2.24287 2.36794 2.67013 3.13869 3.18265 3.42626 3.68821 3.72889 3.82094 3.91648 3.99145 3.99715 4.16260 4.18673 4.26513 4.35925 4.40411 4.44424 4.48222 4.56627 4.61813 4.63812 4.69099 4.73086 4.75053 4.81237 4.88844 4.90518 4.96478 5.13052 5.25165 5.35739 5.52837 5.56498 5.82652 5.87356 5.92911 6.05828 6.47728 6.55257 6.62193 6.91316 7.22453 7.42925 8.00463 8.78468 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.029125 B = 0.002325 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.146706 B =12040.984958 C =12372.977756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.360 5.360 3 C 0.132 3.868 4 C -0.313 4.313 5 C 0.593 3.407 6 O -0.597 6.597 7 N -0.595 5.595 8 C 0.139 3.861 9 C 0.054 3.946 10 H 0.078 0.922 11 C -0.143 4.143 12 C -0.133 4.133 13 C 0.047 3.953 14 H 0.141 0.859 15 C 0.101 3.899 16 N -0.494 5.494 17 C 0.045 3.955 18 C 0.451 3.549 19 O -0.605 6.605 20 N -0.593 5.593 21 C -0.324 4.324 22 H 0.054 0.946 23 C -0.018 4.018 24 N -0.936 5.936 25 Si 0.965 3.035 26 H -0.256 1.256 27 H -0.278 1.278 28 H -0.232 1.232 29 C 0.073 3.927 30 N -0.319 5.319 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.117 0.883 34 H 0.205 0.795 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.127 0.873 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.128 0.872 45 H 0.389 0.611 46 H 0.278 0.722 47 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.441 -9.389 2.111 33.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.138 5.138 3 C -0.021 4.021 4 C -0.328 4.328 5 C 0.385 3.615 6 O -0.479 6.479 7 N -0.326 5.326 8 C 0.016 3.984 9 C -0.056 4.056 10 H 0.096 0.904 11 C -0.183 4.183 12 C -0.172 4.172 13 C -0.062 4.062 14 H 0.158 0.842 15 C -0.021 4.021 16 N -0.217 5.217 17 C -0.086 4.086 18 C 0.239 3.761 19 O -0.489 6.489 20 N -0.235 5.235 21 C -0.453 4.453 22 H 0.073 0.927 23 C -0.216 4.216 24 N -0.577 5.577 25 Si 0.785 3.215 26 H -0.180 1.180 27 H -0.203 1.203 28 H -0.155 1.155 29 C -0.113 4.113 30 N -0.139 5.139 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.136 0.864 34 H 0.222 0.778 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.145 0.855 42 H 0.106 0.894 43 H 0.094 0.906 44 H 0.146 0.854 45 H 0.224 0.776 46 H 0.087 0.913 47 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -32.947 -9.738 0.737 34.363 hybrid contribution 1.383 1.497 1.238 2.385 sum -31.563 -8.241 1.976 32.681 Atomic orbital electron populations 1.22400 0.70957 1.06693 1.05297 1.48787 1.08609 1.03077 1.53307 1.23258 0.89711 0.94712 0.94435 1.20142 0.93068 0.94067 1.25538 1.17607 0.82545 0.85748 0.75637 1.90733 1.86280 1.18683 1.52243 1.47855 1.05610 1.15755 1.63402 1.21494 0.84106 0.96083 0.96760 1.23293 0.96995 0.90330 0.94941 0.90351 1.23077 0.98236 0.99132 0.97820 1.23065 1.00538 0.93368 1.00230 1.23719 0.87343 1.00241 0.94882 0.84164 1.22854 1.01765 0.82026 0.95431 1.65191 1.06412 1.11259 1.38856 1.21967 0.89232 1.02959 0.94450 1.20887 0.86480 0.83361 0.85351 1.90551 1.83120 1.52602 1.22632 1.42054 1.12724 1.55105 1.13600 1.18975 0.90586 1.36160 0.99602 0.92736 1.26124 0.94116 0.97208 1.04159 1.69810 1.05135 1.44678 1.38077 0.85364 0.80446 0.79192 0.76491 1.18022 1.20293 1.15487 1.24866 0.95885 0.93733 0.96832 1.77188 1.02277 1.08976 1.25461 0.88989 0.88118 0.86422 0.77821 0.92076 0.90664 0.92249 0.92126 0.90466 0.89830 0.85527 0.89435 0.90622 0.85440 0.77595 0.91258 0.76295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.31 11.44 127.77 1.46 1.77 16 2 N -0.36 -4.69 3.98 -367.78 -1.46 -6.15 16 3 C 0.13 2.02 11.34 84.28 0.96 2.98 16 4 C -0.31 -6.17 5.80 -20.15 -0.12 -6.28 16 5 C 0.59 15.58 7.67 86.66 0.66 16.24 16 6 O -0.60 -20.26 16.41 -4.07 -0.07 -20.33 16 7 N -0.60 -14.57 2.25 -818.88 -1.84 -16.41 16 8 C 0.14 4.30 5.92 86.56 0.51 4.82 16 9 C 0.05 1.72 3.13 45.36 0.14 1.86 16 10 H 0.08 3.23 6.03 -2.39 -0.01 3.21 16 11 C -0.14 -3.72 5.57 32.15 0.18 -3.54 16 12 C -0.13 -2.45 5.66 32.15 0.18 -2.27 16 13 C 0.05 0.84 3.62 45.39 0.16 1.01 16 14 H 0.14 1.63 8.10 -2.39 -0.02 1.61 16 15 C 0.10 1.73 4.40 86.56 0.38 2.11 16 16 N -0.49 -13.91 4.75 -831.33 -3.95 -17.86 16 17 C 0.05 1.31 5.32 85.56 0.46 1.77 16 18 C 0.45 19.91 7.16 87.66 0.63 20.54 16 19 O -0.61 -32.91 14.22 -3.07 -0.04 -32.95 16 20 N -0.59 -27.57 5.09 -306.99 -1.56 -29.13 16 21 C -0.32 -18.91 10.16 84.04 0.85 -18.05 16 22 H 0.05 3.81 7.39 -2.91 -0.02 3.79 16 23 C -0.02 -0.99 5.50 84.93 0.47 -0.52 16 24 N -0.94 -56.74 13.96 21.66 0.30 -56.43 16 25 Si 0.96 38.67 27.74 68.60 1.90 40.57 16 26 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 27 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 28 H -0.23 -7.76 6.52 99.48 0.65 -7.11 16 29 C 0.07 1.18 9.71 85.65 0.83 2.01 16 30 N -0.32 -5.44 12.50 -56.28 -0.70 -6.14 16 31 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.12 -0.18 8.14 -2.38 -0.02 -0.20 16 34 H 0.21 2.24 8.06 -2.91 -0.02 2.21 16 35 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.07 2.53 7.07 -2.38 -0.02 2.52 16 37 H 0.06 1.58 8.11 -2.39 -0.02 1.56 16 38 H 0.06 1.69 7.84 -2.39 -0.02 1.67 16 39 H 0.08 1.34 7.84 -2.38 -0.02 1.32 16 40 H 0.08 1.28 8.09 -2.39 -0.02 1.26 16 41 H 0.13 1.54 3.99 -2.39 -0.01 1.53 16 42 H 0.09 1.42 8.09 -2.38 -0.02 1.40 16 43 H 0.08 1.87 7.01 -2.39 -0.02 1.85 16 44 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 45 H 0.39 14.92 5.76 -92.71 -0.53 14.38 16 46 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 47 H 0.22 2.41 5.52 -2.91 -0.02 2.40 16 Total: -1.00 -87.17 371.95 0.76 -86.41 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: 0.43 Total: 33.99 kcal Atomic # 6 Polarization: 16.67 SS G_CDS: 7.76 Total: 24.43 kcal Atomic # 7 Polarization: -122.90 SS G_CDS: -9.22 Total: -132.12 kcal Atomic # 8 Polarization: -53.17 SS G_CDS: -0.11 Total: -53.28 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 1.90 Total: 40.57 kcal Total: -87.17 0.76 -86.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481375104.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.182 kcal (2) G-P(sol) polarization free energy of solvation -87.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds