Wall clock time and date at job start Wed Apr 1 2020 06:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46907 * 111.00085 * 2 1 4 4 C 1.50703 * 109.46843 * 66.04751 * 3 2 1 5 5 O 1.21286 * 120.00087 * 0.02562 * 4 3 2 6 6 N 1.34771 * 119.99736 * 180.02562 * 4 3 2 7 7 C 1.37096 * 120.00334 * 180.02562 * 6 4 3 8 8 H 1.08002 * 119.99619 * 359.97438 * 7 6 4 9 9 C 1.38947 * 120.00648 * 180.02562 * 7 6 4 10 10 N 1.31419 * 119.99599 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 120.00355 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47029 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47412 * 119.99649 * 11 9 7 14 14 H 1.48506 * 109.47128 * 239.99459 * 11 9 7 15 15 C 1.46905 * 111.00008 * 236.04735 * 2 1 3 16 16 C 1.52996 * 109.47016 * 199.76023 * 15 2 1 17 17 H 1.09004 * 110.89003 * 307.91283 * 16 15 2 18 18 C 1.55159 * 111.00484 * 184.02828 * 16 15 2 19 19 C 1.54320 * 103.10329 * 206.29625 * 18 16 15 20 20 N 1.47492 * 107.03696 * 22.24302 * 19 18 16 21 21 C 1.34775 * 125.59598 * 180.99109 * 20 19 18 22 22 O 1.21508 * 120.00387 * 180.02562 * 21 20 19 23 23 C 1.48162 * 119.99806 * 0.03508 * 21 20 19 24 24 C 1.39709 * 120.18251 * 180.02562 * 23 21 20 25 25 C 1.38817 * 117.89993 * 180.02562 * 24 23 21 26 26 C 1.38567 * 118.06910 * 0.02562 * 25 24 23 27 27 N 1.32173 * 120.06904 * 359.97438 * 26 25 24 28 28 N 1.28352 * 122.29672 * 359.70653 * 27 26 25 29 29 C 1.47421 * 108.75542 * 1.02072 * 20 19 18 30 30 H 1.08995 * 109.46802 * 188.99605 * 1 2 3 31 31 H 1.09004 * 109.46996 * 308.99294 * 1 2 3 32 32 H 1.08999 * 109.46940 * 68.99711 * 1 2 3 33 33 H 1.09001 * 109.47331 * 186.04671 * 3 2 1 34 34 H 1.08994 * 109.46714 * 306.04531 * 3 2 1 35 35 H 0.97003 * 120.00140 * 359.97438 * 6 4 3 36 36 H 0.97001 * 119.99932 * 180.02562 * 10 9 7 37 37 H 1.09002 * 109.46922 * 79.76076 * 15 2 1 38 38 H 1.08999 * 109.46802 * 319.76204 * 15 2 1 39 39 H 1.08993 * 110.71891 * 324.75051 * 18 16 15 40 40 H 1.08997 * 110.71869 * 87.84790 * 18 16 15 41 41 H 1.08999 * 109.88060 * 141.69917 * 19 18 16 42 42 H 1.08996 * 109.88498 * 262.86351 * 19 18 16 43 43 H 1.08004 * 121.05222 * 0.02863 * 24 23 21 44 44 H 1.08002 * 120.97021 * 180.02562 * 25 24 23 45 45 H 1.08002 * 119.97038 * 180.02562 * 26 25 24 46 46 H 1.08998 * 110.36699 * 217.05331 * 29 20 19 47 47 H 1.09003 * 110.46086 * 94.78426 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2985 5 8 1.0055 1.4453 2.1411 6 7 2.0180 3.3201 1.5234 7 6 1.6924 3.9347 2.7048 8 1 1.1301 3.3988 3.4552 9 6 2.0848 5.2473 2.9365 10 7 2.7686 5.8996 2.0232 11 14 1.6405 6.0849 4.5459 12 1 0.8733 5.1422 5.3991 13 1 2.8821 6.4929 5.2509 14 1 0.8123 7.2856 4.2669 15 6 1.9955 -0.7660 -1.1376 16 6 3.4456 -1.1647 -0.8566 17 1 4.0394 -0.2960 -0.5722 18 6 4.0699 -1.8893 -2.0784 19 6 5.1630 -2.7722 -1.4405 20 7 4.7924 -2.9643 -0.0258 21 6 5.5012 -3.6629 0.8829 22 8 5.0992 -3.7564 2.0258 23 6 6.7709 -4.3169 0.4885 24 6 7.5085 -5.0425 1.4273 25 6 8.6911 -5.6352 1.0066 26 6 9.0680 -5.4710 -0.3167 27 7 8.3094 -4.7672 -1.1389 28 7 7.2114 -4.2207 -0.7604 29 6 3.5189 -2.2669 0.2294 30 1 -0.3633 -1.0150 0.1607 31 1 -0.3633 0.6467 0.7988 32 1 -0.3633 0.3683 -0.9594 33 1 3.0798 1.3445 -0.1083 34 1 1.5611 1.9273 -0.8309 35 1 2.5234 3.8014 0.8496 36 1 3.0429 6.8158 2.1850 37 1 1.9551 -0.1531 -2.0381 38 1 1.3933 -1.6631 -1.2814 39 1 3.3250 -2.5032 -2.5846 40 1 4.5096 -1.1704 -2.7697 41 1 5.2055 -3.7352 -1.9494 42 1 6.1292 -2.2723 -1.5074 43 1 7.1692 -5.1392 2.4481 44 1 9.2999 -6.2077 1.6908 45 1 9.9822 -5.9193 -0.6769 46 1 3.5236 -1.8202 1.2236 47 1 2.6802 -2.9558 0.1279 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481501481.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:06 Heat of formation + Delta-G solvation = 12.148997 kcal Electronic energy + Delta-G solvation = -29916.682988 eV Core-core repulsion = 25714.822684 eV Total energy + Delta-G solvation = -4201.860303 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.57768 -39.94422 -38.69868 -37.75643 -36.07137 -33.87285 -33.67432 -33.28258 -31.90306 -31.20900 -29.44481 -27.98355 -27.03286 -25.50133 -24.93920 -24.58582 -23.42834 -21.80503 -20.59825 -20.18776 -19.04248 -18.25412 -17.80613 -17.51213 -17.12944 -16.57490 -16.05146 -15.89528 -15.35957 -15.13092 -14.93837 -14.59068 -14.44402 -14.32550 -13.76351 -13.70429 -13.65402 -13.40419 -13.33388 -12.97094 -12.82153 -12.45637 -12.15064 -11.88798 -11.71888 -11.48013 -11.42653 -11.26020 -11.05878 -11.00614 -10.82260 -10.75176 -10.55872 -10.48214 -10.31752 -10.27134 -10.19810 -10.19267 -9.45336 -8.77301 -8.39095 -7.94541 -7.82949 -6.38946 -3.79370 0.03577 0.28671 2.37825 2.60709 3.18409 3.27015 3.28830 3.36301 3.45536 3.91436 3.94089 3.98472 4.07932 4.22368 4.25597 4.40976 4.52628 4.57335 4.67818 4.78139 5.09857 5.14863 5.20929 5.26084 5.29311 5.38518 5.44706 5.55442 5.58370 5.64254 5.66763 5.73561 5.77511 5.78138 5.88015 5.98425 6.04420 6.09255 6.12092 6.27456 6.33140 6.56044 7.25620 7.30147 7.41779 7.58445 7.79299 8.10045 8.11890 8.65211 9.21615 9.58062 10.10079 10.78997 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012893 B = 0.002198 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.118578 B =12735.237812 C =13804.733525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.519 5.519 3 C 0.044 3.956 4 C 0.444 3.556 5 O -0.576 6.576 6 N -0.566 5.566 7 C -0.296 4.296 8 H 0.103 0.897 9 C 0.021 3.979 10 N -0.903 5.903 11 Si 0.928 3.072 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.066 3.934 16 C -0.095 4.095 17 H 0.089 0.911 18 C -0.132 4.132 19 C 0.113 3.887 20 N -0.598 5.598 21 C 0.583 3.417 22 O -0.525 6.525 23 C 0.031 3.969 24 C -0.065 4.065 25 C -0.122 4.122 26 C 0.053 3.947 27 N -0.244 5.244 28 N -0.207 5.207 29 C 0.121 3.879 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.013 0.987 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.391 0.609 36 H 0.270 0.730 37 H 0.041 0.959 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.164 0.836 44 H 0.159 0.841 45 H 0.178 0.822 46 H 0.091 0.909 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.893 -21.506 -10.964 26.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.243 5.243 3 C -0.088 4.088 4 C 0.230 3.770 5 O -0.460 6.460 6 N -0.203 5.203 7 C -0.426 4.426 8 H 0.121 0.879 9 C -0.180 4.180 10 N -0.544 5.544 11 Si 0.756 3.244 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.208 1.208 15 C -0.063 4.063 16 C -0.115 4.115 17 H 0.107 0.893 18 C -0.170 4.170 19 C -0.009 4.009 20 N -0.330 5.330 21 C 0.368 3.632 22 O -0.401 6.401 23 C -0.115 4.115 24 C -0.094 4.094 25 C -0.151 4.151 26 C -0.109 4.109 27 N -0.087 5.087 28 N -0.054 5.054 29 C -0.001 4.001 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.032 0.968 33 H 0.105 0.895 34 H 0.065 0.935 35 H 0.224 0.776 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.181 0.819 44 H 0.176 0.824 45 H 0.195 0.805 46 H 0.110 0.890 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.240 -21.436 -10.798 26.095 hybrid contribution 0.360 0.616 0.986 1.217 sum 10.600 -20.820 -9.812 25.340 Atomic orbital electron populations 1.22501 0.86507 1.02634 1.00653 1.61552 1.08642 1.12827 1.41295 1.21915 1.00711 0.89059 0.97073 1.19755 0.85400 0.82895 0.88984 1.90495 1.43808 1.64604 1.47055 1.41883 1.49542 1.10825 1.18044 1.19744 1.32748 0.95374 0.94710 0.87877 1.25254 0.96915 0.96678 0.99204 1.69625 1.38295 1.12160 1.34369 0.85812 0.78198 0.79010 0.81410 1.19218 1.20778 1.20819 1.22064 0.94062 0.98146 0.91995 1.22392 0.96886 0.97883 0.94337 0.89253 1.22777 0.97895 0.98812 0.97546 1.22248 0.98402 1.00326 0.79957 1.48487 1.23644 1.49952 1.10944 1.17162 0.82359 0.79224 0.84442 1.90848 1.69533 1.61248 1.18458 1.22852 0.97443 0.98468 0.92750 1.22481 0.93046 0.92019 1.01900 1.22480 0.96476 0.98676 0.97439 1.24521 1.00181 0.94650 0.91578 1.73174 0.99573 1.05477 1.30487 1.73464 1.06238 1.12033 1.13691 1.22314 0.83774 0.93002 1.00978 0.92112 0.88723 0.96844 0.89498 0.93486 0.77552 0.91990 0.94096 0.90580 0.90441 0.89729 0.90509 0.90356 0.81871 0.82376 0.80526 0.89035 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.15 60.06 0.55 0.94 16 2 N -0.52 -8.35 4.36 -244.36 -1.07 -9.41 16 3 C 0.04 0.77 5.28 -4.97 -0.03 0.75 16 4 C 0.44 10.49 7.42 -10.99 -0.08 10.41 16 5 O -0.58 -15.53 13.96 5.55 0.08 -15.46 16 6 N -0.57 -14.43 5.29 -10.97 -0.06 -14.48 16 7 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 8 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 9 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 10 N -0.90 -24.77 13.05 55.50 0.72 -24.05 16 11 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 C 0.07 0.78 4.45 -3.82 -0.02 0.76 16 16 C -0.10 -1.08 3.09 -88.47 -0.27 -1.35 16 17 H 0.09 1.13 6.71 -51.93 -0.35 0.78 16 18 C -0.13 -1.12 6.41 -24.90 -0.16 -1.28 16 19 C 0.11 1.13 5.43 -2.81 -0.02 1.11 16 20 N -0.60 -7.57 3.34 -171.14 -0.57 -8.14 16 21 C 0.58 8.09 7.85 -12.19 -0.10 7.99 16 22 O -0.53 -8.85 16.65 5.36 0.09 -8.76 16 23 C 0.03 0.35 6.80 -82.83 -0.56 -0.21 16 24 C -0.07 -0.55 9.73 -38.82 -0.38 -0.93 16 25 C -0.12 -0.66 10.20 -39.25 -0.40 -1.06 16 26 C 0.05 0.33 11.31 -17.28 -0.20 0.13 16 27 N -0.24 -2.39 11.51 30.58 0.35 -2.04 16 28 N -0.21 -2.30 8.09 33.32 0.27 -2.03 16 29 C 0.12 1.59 6.31 -2.53 -0.02 1.57 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.09 1.85 5.79 -51.93 -0.30 1.55 16 32 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 33 H 0.09 1.40 6.59 -51.93 -0.34 1.06 16 34 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 35 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 36 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.04 0.44 8.00 -51.93 -0.42 0.02 16 38 H 0.08 0.80 7.78 -51.93 -0.40 0.39 16 39 H 0.08 0.57 8.04 -51.93 -0.42 0.15 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.73 7.55 -51.93 -0.39 0.34 16 42 H 0.08 0.81 7.44 -51.93 -0.39 0.42 16 43 H 0.16 1.24 7.72 -52.48 -0.41 0.84 16 44 H 0.16 0.27 8.06 -52.49 -0.42 -0.15 16 45 H 0.18 0.42 8.06 -52.49 -0.42 -0.01 16 46 H 0.09 1.50 8.04 -51.93 -0.42 1.08 16 47 H 0.07 0.91 7.92 -51.93 -0.41 0.50 16 LS Contribution 389.31 15.07 5.87 5.87 Total: -1.00 -34.95 389.31 -7.86 -42.80 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -6.61 Total: 8.57 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: -1.91 Total: 10.84 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -0.35 Total: -60.16 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: 0.17 Total: -24.22 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.95 -7.86 -42.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481501481.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.954 kcal (2) G-P(sol) polarization free energy of solvation -34.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds