Wall clock time and date at job start Wed Apr 1 2020 06:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46907 * 111.00085 * 2 1 4 4 C 1.50703 * 109.46843 * 66.04751 * 3 2 1 5 5 O 1.21286 * 120.00087 * 0.02562 * 4 3 2 6 6 N 1.34771 * 119.99736 * 180.02562 * 4 3 2 7 7 C 1.37096 * 120.00334 * 180.02562 * 6 4 3 8 8 H 1.08002 * 119.99619 * 359.97438 * 7 6 4 9 9 C 1.38947 * 120.00648 * 180.02562 * 7 6 4 10 10 N 1.31419 * 119.99599 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 120.00355 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47029 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47412 * 119.99649 * 11 9 7 14 14 H 1.48506 * 109.47128 * 239.99459 * 11 9 7 15 15 C 1.46905 * 111.00008 * 236.04735 * 2 1 3 16 16 C 1.52996 * 109.47016 * 199.76023 * 15 2 1 17 17 H 1.09004 * 110.89003 * 307.91283 * 16 15 2 18 18 C 1.55159 * 111.00484 * 184.02828 * 16 15 2 19 19 C 1.54320 * 103.10329 * 206.29625 * 18 16 15 20 20 N 1.47492 * 107.03696 * 22.24302 * 19 18 16 21 21 C 1.34775 * 125.59598 * 180.99109 * 20 19 18 22 22 O 1.21508 * 120.00387 * 180.02562 * 21 20 19 23 23 C 1.48162 * 119.99806 * 0.03508 * 21 20 19 24 24 C 1.39709 * 120.18251 * 180.02562 * 23 21 20 25 25 C 1.38817 * 117.89993 * 180.02562 * 24 23 21 26 26 C 1.38567 * 118.06910 * 0.02562 * 25 24 23 27 27 N 1.32173 * 120.06904 * 359.97438 * 26 25 24 28 28 N 1.28352 * 122.29672 * 359.70653 * 27 26 25 29 29 C 1.47421 * 108.75542 * 1.02072 * 20 19 18 30 30 H 1.08995 * 109.46802 * 188.99605 * 1 2 3 31 31 H 1.09004 * 109.46996 * 308.99294 * 1 2 3 32 32 H 1.08999 * 109.46940 * 68.99711 * 1 2 3 33 33 H 1.09001 * 109.47331 * 186.04671 * 3 2 1 34 34 H 1.08994 * 109.46714 * 306.04531 * 3 2 1 35 35 H 0.97003 * 120.00140 * 359.97438 * 6 4 3 36 36 H 0.97001 * 119.99932 * 180.02562 * 10 9 7 37 37 H 1.09002 * 109.46922 * 79.76076 * 15 2 1 38 38 H 1.08999 * 109.46802 * 319.76204 * 15 2 1 39 39 H 1.08993 * 110.71891 * 324.75051 * 18 16 15 40 40 H 1.08997 * 110.71869 * 87.84790 * 18 16 15 41 41 H 1.08999 * 109.88060 * 141.69917 * 19 18 16 42 42 H 1.08996 * 109.88498 * 262.86351 * 19 18 16 43 43 H 1.08004 * 121.05222 * 0.02863 * 24 23 21 44 44 H 1.08002 * 120.97021 * 180.02562 * 25 24 23 45 45 H 1.08002 * 119.97038 * 180.02562 * 26 25 24 46 46 H 1.08998 * 110.36699 * 217.05331 * 29 20 19 47 47 H 1.09003 * 110.46086 * 94.78426 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2985 5 8 1.0055 1.4453 2.1411 6 7 2.0180 3.3201 1.5234 7 6 1.6924 3.9347 2.7048 8 1 1.1301 3.3988 3.4552 9 6 2.0848 5.2473 2.9365 10 7 2.7686 5.8996 2.0232 11 14 1.6405 6.0849 4.5459 12 1 0.8733 5.1422 5.3991 13 1 2.8821 6.4929 5.2509 14 1 0.8123 7.2856 4.2669 15 6 1.9955 -0.7660 -1.1376 16 6 3.4456 -1.1647 -0.8566 17 1 4.0394 -0.2960 -0.5722 18 6 4.0699 -1.8893 -2.0784 19 6 5.1630 -2.7722 -1.4405 20 7 4.7924 -2.9643 -0.0258 21 6 5.5012 -3.6629 0.8829 22 8 5.0992 -3.7564 2.0258 23 6 6.7709 -4.3169 0.4885 24 6 7.5085 -5.0425 1.4273 25 6 8.6911 -5.6352 1.0066 26 6 9.0680 -5.4710 -0.3167 27 7 8.3094 -4.7672 -1.1389 28 7 7.2114 -4.2207 -0.7604 29 6 3.5189 -2.2669 0.2294 30 1 -0.3633 -1.0150 0.1607 31 1 -0.3633 0.6467 0.7988 32 1 -0.3633 0.3683 -0.9594 33 1 3.0798 1.3445 -0.1083 34 1 1.5611 1.9273 -0.8309 35 1 2.5234 3.8014 0.8496 36 1 3.0429 6.8158 2.1850 37 1 1.9551 -0.1531 -2.0381 38 1 1.3933 -1.6631 -1.2814 39 1 3.3250 -2.5032 -2.5846 40 1 4.5096 -1.1704 -2.7697 41 1 5.2055 -3.7352 -1.9494 42 1 6.1292 -2.2723 -1.5074 43 1 7.1692 -5.1392 2.4481 44 1 9.2999 -6.2077 1.6908 45 1 9.9822 -5.9193 -0.6769 46 1 3.5236 -1.8202 1.2236 47 1 2.6802 -2.9558 0.1279 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481501481.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:05 Heat of formation + Delta-G solvation = -14.680335 kcal Electronic energy + Delta-G solvation = -29917.846395 eV Core-core repulsion = 25714.822684 eV Total energy + Delta-G solvation = -4203.023711 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.28409 -40.90593 -40.31629 -38.98043 -37.40030 -35.85895 -34.30900 -34.07772 -33.27193 -32.80859 -30.36841 -29.51183 -28.01702 -26.73380 -26.16684 -25.52891 -24.40110 -22.95435 -21.51323 -21.28438 -20.71497 -19.82364 -19.07607 -18.25969 -17.94441 -17.65739 -17.23984 -16.91370 -16.68186 -16.52810 -16.16996 -16.08849 -15.51060 -15.30694 -15.13245 -15.11144 -14.86601 -14.42806 -14.22391 -13.95962 -13.89714 -13.75248 -13.45521 -13.37242 -13.08373 -12.80727 -12.71846 -12.55098 -12.42206 -12.35202 -12.12747 -12.00403 -11.77880 -11.52039 -11.42381 -11.34837 -11.25340 -11.18513 -10.85417 -10.24934 -9.98989 -9.78774 -9.12745 -8.46661 -5.94770 -0.63546 -0.29275 1.35278 1.40066 1.49831 1.54369 1.69884 2.07127 2.28289 2.54459 2.69319 2.82114 3.20395 3.32255 3.40661 3.47580 3.67522 3.68133 3.75876 3.88327 3.90031 4.12236 4.22372 4.32228 4.39082 4.42366 4.50306 4.55443 4.59058 4.70620 4.73028 4.75065 4.80508 4.81636 4.86447 4.97001 5.01625 5.12504 5.15474 5.23025 5.24362 5.40436 5.41361 5.90997 6.10954 6.26239 6.30527 6.61817 6.78686 7.14124 7.45571 7.57981 8.14587 8.71130 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.012893 B = 0.002198 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.118578 B =12735.237812 C =13804.733525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.543 5.543 3 C 0.058 3.942 4 C 0.440 3.560 5 O -0.615 6.615 6 N -0.577 5.577 7 C -0.330 4.330 8 H 0.077 0.923 9 C -0.014 4.014 10 N -0.921 5.921 11 Si 0.991 3.009 12 H -0.275 1.275 13 H -0.272 1.272 14 H -0.269 1.269 15 C 0.071 3.929 16 C -0.090 4.090 17 H 0.074 0.926 18 C -0.116 4.116 19 C 0.115 3.885 20 N -0.600 5.600 21 C 0.574 3.426 22 O -0.572 6.572 23 C 0.008 3.992 24 C -0.080 4.080 25 C -0.097 4.097 26 C 0.062 3.938 27 N -0.272 5.272 28 N -0.222 5.222 29 C 0.120 3.880 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.037 0.963 33 H 0.104 0.896 34 H 0.071 0.929 35 H 0.396 0.604 36 H 0.277 0.723 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.164 0.836 44 H 0.204 0.796 45 H 0.221 0.779 46 H 0.048 0.952 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.659 -22.657 -13.078 29.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.267 5.267 3 C -0.073 4.073 4 C 0.228 3.772 5 O -0.500 6.500 6 N -0.215 5.215 7 C -0.459 4.459 8 H 0.095 0.905 9 C -0.214 4.214 10 N -0.562 5.562 11 Si 0.815 3.185 12 H -0.200 1.200 13 H -0.197 1.197 14 H -0.194 1.194 15 C -0.057 4.057 16 C -0.109 4.109 17 H 0.093 0.907 18 C -0.155 4.155 19 C -0.007 4.007 20 N -0.331 5.331 21 C 0.360 3.640 22 O -0.451 6.451 23 C -0.138 4.138 24 C -0.109 4.109 25 C -0.126 4.126 26 C -0.100 4.100 27 N -0.115 5.115 28 N -0.069 5.069 29 C -0.002 4.002 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.122 0.878 34 H 0.088 0.912 35 H 0.229 0.771 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.124 0.876 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.182 0.818 44 H 0.221 0.779 45 H 0.237 0.763 46 H 0.066 0.934 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.021 -22.580 -12.982 28.686 hybrid contribution -0.097 0.842 1.635 1.842 sum 11.924 -21.738 -11.347 27.267 Atomic orbital electron populations 1.22366 0.86578 1.02656 1.00164 1.61483 1.08846 1.12084 1.44331 1.21754 1.01880 0.89869 0.93776 1.20883 0.83584 0.82151 0.90606 1.90472 1.45122 1.65346 1.49102 1.41954 1.50220 1.11686 1.17599 1.19663 1.34253 0.96342 0.95684 0.90546 1.26016 0.96386 0.96638 1.02351 1.69679 1.38317 1.12619 1.35622 0.84897 0.78249 0.77929 0.77426 1.19973 1.19679 1.19413 1.22149 0.93946 0.98507 0.91080 1.22323 0.96939 0.96737 0.94942 0.90747 1.22780 0.97559 0.98757 0.96357 1.22367 0.98846 1.01036 0.78406 1.48654 1.23259 1.49177 1.12043 1.17703 0.83233 0.78992 0.84029 1.90800 1.70944 1.63097 1.20240 1.22594 0.97044 1.00188 0.93989 1.22669 0.94234 0.92389 1.01638 1.22974 0.94941 0.96899 0.97792 1.25241 1.00546 0.92759 0.91481 1.73098 0.99791 1.06823 1.31784 1.73395 1.07211 1.12849 1.13441 1.22237 0.84497 0.93801 0.99629 0.90587 0.93147 0.94483 0.87815 0.91165 0.77076 0.91357 0.91605 0.88699 0.88282 0.87579 0.89809 0.90794 0.81848 0.77874 0.76254 0.93360 0.90494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 9.15 127.69 1.17 2.11 16 2 N -0.54 -17.09 4.36 -927.03 -4.04 -21.13 16 3 C 0.06 2.03 5.28 85.56 0.45 2.48 16 4 C 0.44 21.47 7.42 87.66 0.65 22.13 16 5 O -0.61 -34.86 13.96 -3.05 -0.04 -34.90 16 6 N -0.58 -30.35 5.29 -307.00 -1.62 -31.98 16 7 C -0.33 -19.22 9.68 84.04 0.81 -18.40 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 C -0.01 -0.79 5.50 84.92 0.47 -0.32 16 10 N -0.92 -50.62 13.05 21.66 0.28 -50.34 16 11 Si 0.99 44.12 29.55 68.60 2.03 46.15 16 12 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 13 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 14 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 15 C 0.07 1.48 4.45 86.30 0.38 1.87 16 16 C -0.09 -1.92 3.09 -9.40 -0.03 -1.95 16 17 H 0.07 1.83 6.71 -2.39 -0.02 1.81 16 18 C -0.12 -1.67 6.41 31.78 0.20 -1.46 16 19 C 0.12 2.20 5.43 86.64 0.47 2.67 16 20 N -0.60 -15.76 3.34 -813.66 -2.72 -18.47 16 21 C 0.57 16.96 7.85 86.88 0.68 17.64 16 22 O -0.57 -20.94 16.65 -3.74 -0.06 -21.00 16 23 C 0.01 0.18 6.80 41.99 0.29 0.47 16 24 C -0.08 -1.32 9.73 22.76 0.22 -1.10 16 25 C -0.10 -0.76 10.20 22.49 0.23 -0.53 16 26 C 0.06 0.56 11.31 84.72 0.96 1.52 16 27 N -0.27 -4.89 11.51 -57.15 -0.66 -5.54 16 28 N -0.22 -4.84 8.09 -48.49 -0.39 -5.23 16 29 C 0.12 3.29 6.31 86.86 0.55 3.84 16 30 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 31 H 0.05 2.03 5.79 -2.38 -0.01 2.02 16 32 H 0.04 0.96 8.13 -2.39 -0.02 0.94 16 33 H 0.10 3.26 6.59 -2.39 -0.02 3.25 16 34 H 0.07 2.14 8.12 -2.39 -0.02 2.12 16 35 H 0.40 19.71 7.90 -92.71 -0.73 18.98 16 36 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 37 H 0.07 1.13 8.00 -2.39 -0.02 1.11 16 38 H 0.09 1.69 7.78 -2.39 -0.02 1.67 16 39 H 0.10 1.06 8.04 -2.39 -0.02 1.04 16 40 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.08 1.51 7.55 -2.39 -0.02 1.49 16 42 H 0.07 1.49 7.44 -2.39 -0.02 1.47 16 43 H 0.16 2.57 7.72 -2.91 -0.02 2.54 16 44 H 0.20 -0.31 8.06 -2.91 -0.02 -0.33 16 45 H 0.22 -0.05 8.06 -2.91 -0.02 -0.07 16 46 H 0.05 1.72 8.04 -2.39 -0.02 1.71 16 47 H 0.08 1.98 7.92 -2.39 -0.02 1.96 16 Total: -1.00 -82.24 389.31 0.55 -81.68 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: 0.27 Total: 29.80 kcal Atomic # 6 Polarization: 23.45 SS G_CDS: 7.50 Total: 30.96 kcal Atomic # 7 Polarization: -123.54 SS G_CDS: -9.15 Total: -132.69 kcal Atomic # 8 Polarization: -55.79 SS G_CDS: -0.10 Total: -55.90 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -82.24 0.55 -81.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481501481.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.004 kcal (2) G-P(sol) polarization free energy of solvation -82.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds