Wall clock time and date at job start Wed Apr 1 2020 06:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.50706 * 109.46563 * 66.04606 * 3 2 1 5 5 O 1.21287 * 120.00244 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99391 * 180.02562 * 4 3 2 7 7 C 1.37098 * 119.99877 * 179.97438 * 6 4 3 8 8 H 1.08002 * 119.99927 * 0.02562 * 7 6 4 9 9 C 1.38945 * 120.00234 * 179.97438 * 7 6 4 10 10 N 1.31408 * 119.99935 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00107 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47166 * 90.00294 * 11 9 7 13 13 H 1.48500 * 109.47200 * 210.00313 * 11 9 7 14 14 H 1.48505 * 109.46946 * 330.00311 * 11 9 7 15 15 C 1.46906 * 110.99793 * 236.04672 * 2 1 3 16 16 C 1.52996 * 109.47022 * 293.95609 * 15 2 1 17 17 H 1.09002 * 110.88993 * 57.42866 * 16 15 2 18 18 C 1.55161 * 111.00179 * 181.35050 * 16 15 2 19 19 C 1.54325 * 102.93982 * 153.57626 * 18 16 15 20 20 N 1.47020 * 107.27387 * 337.80320 * 19 18 16 21 21 C 1.34772 * 125.64845 * 178.97456 * 20 19 18 22 22 O 1.21468 * 120.00193 * 179.97438 * 21 20 19 23 23 C 1.48538 * 120.00327 * 359.96292 * 21 20 19 24 24 N 1.32464 * 119.18398 * 359.73145 * 23 21 20 25 25 C 1.32113 * 120.76975 * 179.71681 * 24 23 21 26 26 C 1.38802 * 119.15828 * 0.54295 * 25 24 23 27 27 C 1.38795 * 118.51115 * 359.73101 * 26 25 24 28 28 N 1.32110 * 119.16466 * 0.02562 * 27 26 25 29 29 C 1.47422 * 108.70076 * 358.94528 * 20 19 18 30 30 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 31 31 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 32 32 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 33 33 H 1.08994 * 109.47410 * 186.04624 * 3 2 1 34 34 H 1.08999 * 109.47216 * 306.04953 * 3 2 1 35 35 H 0.97003 * 120.00555 * 0.02562 * 6 4 3 36 36 H 0.96999 * 120.00290 * 179.97438 * 10 9 7 37 37 H 1.08997 * 109.46995 * 53.95554 * 15 2 1 38 38 H 1.09001 * 109.46848 * 173.95560 * 15 2 1 39 39 H 1.08999 * 110.72283 * 271.93502 * 18 16 15 40 40 H 1.08997 * 110.72047 * 35.21590 * 18 16 15 41 41 H 1.09000 * 109.87886 * 218.38581 * 19 18 16 42 42 H 1.08996 * 109.88489 * 97.22706 * 19 18 16 43 43 H 1.07997 * 120.42008 * 180.27097 * 25 24 23 44 44 H 1.08001 * 120.74412 * 179.75003 * 26 25 24 45 45 H 1.08001 * 120.41906 * 179.97438 * 27 26 25 46 46 H 1.09003 * 110.36512 * 265.28592 * 29 20 19 47 47 H 1.09004 * 110.36603 * 142.96184 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 8 1.0055 1.4452 2.1412 6 7 2.0182 3.3200 1.5234 7 6 1.6916 3.9349 2.7044 8 1 1.1293 3.3991 3.4548 9 6 2.0850 5.2472 2.9365 10 7 2.7697 5.8991 2.0238 11 14 1.6406 6.0847 4.5460 12 1 2.7173 5.8481 5.5409 13 1 1.4885 7.5444 4.3190 14 1 0.3627 5.5275 5.0577 15 6 1.9954 -0.7660 -1.1377 16 6 1.6314 -2.2426 -0.9704 17 1 0.5522 -2.3695 -0.8842 18 6 2.2004 -3.0913 -2.1380 19 6 2.3577 -4.4896 -1.5042 20 7 2.4369 -4.3024 -0.0481 21 6 2.5583 -5.2864 0.8648 22 8 2.6152 -5.0142 2.0472 23 6 2.6222 -6.7038 0.4252 24 7 2.5531 -6.9827 -0.8679 25 6 2.6124 -8.2318 -1.2940 26 6 2.7374 -9.2573 -0.3671 27 6 2.8013 -8.9287 0.9799 28 7 2.7411 -7.6580 1.3361 29 6 2.3622 -2.8602 0.2478 30 1 -0.3634 -1.0252 0.0708 31 1 -0.3633 0.4513 -0.9233 32 1 -0.3633 0.5740 0.8525 33 1 3.0798 1.3443 -0.1082 34 1 1.5612 1.9273 -0.8309 35 1 2.5229 3.8015 0.8493 36 1 3.0440 6.8153 2.1856 37 1 1.5611 -0.3872 -2.0628 38 1 3.0797 -0.6611 -1.1757 39 1 1.4975 -3.1222 -2.9706 40 1 3.1663 -2.7037 -2.4615 41 1 3.2710 -4.9606 -1.8676 42 1 1.4953 -5.1082 -1.7522 43 1 2.5599 -8.4525 -2.3499 44 1 2.7842 -10.2879 -0.6868 45 1 2.8982 -9.7021 1.7275 46 1 3.3635 -2.4400 0.3425 47 1 1.7903 -2.6892 1.1599 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481504978.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:56 Heat of formation + Delta-G solvation = 10.739515 kcal Electronic energy + Delta-G solvation = -29679.773917 eV Core-core repulsion = 25477.852494 eV Total energy + Delta-G solvation = -4201.921423 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.66101 -39.91562 -38.63594 -37.73288 -36.07652 -34.35002 -33.81548 -32.92271 -31.87796 -31.18468 -29.47675 -27.81408 -27.08855 -25.63629 -25.01051 -24.52984 -23.40987 -21.89620 -20.64392 -19.97820 -19.09507 -18.23542 -17.83042 -17.72223 -16.73645 -16.53546 -15.99586 -15.85679 -15.53287 -15.13035 -14.92277 -14.81905 -14.54392 -14.23910 -14.08803 -13.81859 -13.57757 -13.42811 -13.33343 -12.95867 -12.72811 -12.43260 -12.11039 -11.79390 -11.63800 -11.49352 -11.41495 -11.29878 -11.22358 -11.04522 -10.99476 -10.82901 -10.57907 -10.35358 -10.23590 -10.20125 -10.17000 -9.73236 -9.42677 -8.74402 -8.39589 -7.92635 -7.80009 -6.37145 -3.77544 0.00761 0.55294 2.40148 2.42910 3.21832 3.30085 3.36073 3.44981 3.45762 3.76431 3.94993 3.98278 4.01850 4.25858 4.35886 4.42451 4.50635 4.58255 4.70856 4.81586 5.08086 5.15426 5.16715 5.25369 5.29276 5.37927 5.54329 5.61263 5.63653 5.69754 5.73314 5.76552 5.79747 5.88117 5.99195 6.04318 6.09160 6.11018 6.24891 6.33600 6.38430 6.61258 7.21780 7.30765 7.42613 7.44288 7.60043 7.94444 8.11715 8.67219 9.23418 9.59869 10.12120 10.80703 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021929 B = 0.001851 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.538174 B =15122.867075 C =15999.599406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.519 5.519 3 C 0.046 3.954 4 C 0.444 3.556 5 O -0.575 6.575 6 N -0.566 5.566 7 C -0.297 4.297 8 H 0.103 0.897 9 C 0.021 3.979 10 N -0.903 5.903 11 Si 0.929 3.071 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.270 1.270 15 C 0.065 3.935 16 C -0.095 4.095 17 H 0.087 0.913 18 C -0.132 4.132 19 C 0.119 3.881 20 N -0.600 5.600 21 C 0.591 3.409 22 O -0.500 6.500 23 C 0.291 3.709 24 N -0.490 5.490 25 C 0.142 3.858 26 C -0.212 4.212 27 C 0.146 3.854 28 N -0.468 5.468 29 C 0.123 3.877 30 H 0.060 0.940 31 H 0.013 0.987 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.047 0.953 35 H 0.391 0.609 36 H 0.271 0.729 37 H 0.037 0.963 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.176 0.824 44 H 0.154 0.846 45 H 0.177 0.823 46 H 0.075 0.925 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.971 -27.931 -15.744 32.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.242 5.242 3 C -0.085 4.085 4 C 0.230 3.770 5 O -0.459 6.459 6 N -0.203 5.203 7 C -0.427 4.427 8 H 0.121 0.879 9 C -0.180 4.180 10 N -0.545 5.545 11 Si 0.757 3.243 12 H -0.204 1.204 13 H -0.210 1.210 14 H -0.195 1.195 15 C -0.063 4.063 16 C -0.114 4.114 17 H 0.105 0.895 18 C -0.171 4.171 19 C -0.004 4.004 20 N -0.335 5.335 21 C 0.374 3.626 22 O -0.371 6.371 23 C 0.021 3.979 24 N -0.207 5.207 25 C -0.024 4.024 26 C -0.234 4.234 27 C -0.020 4.020 28 N -0.183 5.183 29 C 0.002 3.998 30 H 0.078 0.922 31 H 0.032 0.968 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.065 0.935 35 H 0.225 0.775 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.193 0.807 44 H 0.172 0.828 45 H 0.194 0.806 46 H 0.093 0.907 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.760 -27.283 -13.687 30.533 hybrid contribution -0.007 0.074 -0.855 0.859 sum 0.754 -27.209 -14.543 30.861 Atomic orbital electron populations 1.22570 0.86826 1.01908 1.01391 1.61568 1.08704 1.12837 1.41122 1.21857 1.00633 0.88903 0.97101 1.19753 0.85403 0.82900 0.88975 1.90495 1.43775 1.64583 1.47060 1.41869 1.49584 1.10788 1.18036 1.19699 1.32793 0.95399 0.94762 0.87926 1.25244 0.96902 0.96668 0.99178 1.69610 1.38247 1.12225 1.34390 0.85867 0.79105 0.77990 0.81384 1.20420 1.21006 1.19452 1.22084 1.00352 0.91836 0.92068 1.22377 1.00717 0.94220 0.94101 0.89453 1.22800 1.02152 0.94320 0.97827 1.22092 1.02646 0.96711 0.78962 1.48290 1.70801 1.06988 1.07374 1.16830 0.78869 0.81917 0.84959 1.90865 1.48385 1.82067 1.15796 1.22899 0.94377 0.95433 0.85184 1.68634 1.12432 1.22664 1.16980 1.23378 0.90395 0.87371 1.01260 1.23202 1.01765 1.02726 0.95697 1.23435 0.90254 0.92995 0.95335 1.68276 1.10408 1.01021 1.38602 1.22309 1.01374 0.76729 0.99399 0.92153 0.96814 0.88615 0.89424 0.93512 0.77540 0.91957 0.94447 0.90502 0.89952 0.90330 0.90825 0.90711 0.80707 0.82838 0.80632 0.90651 0.89087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 8.98 60.07 0.54 0.87 16 2 N -0.52 -8.39 4.32 -244.37 -1.06 -9.45 16 3 C 0.05 0.82 5.45 -4.97 -0.03 0.79 16 4 C 0.44 10.54 7.47 -10.98 -0.08 10.46 16 5 O -0.58 -15.64 13.91 5.55 0.08 -15.57 16 6 N -0.57 -14.46 5.29 -10.96 -0.06 -14.52 16 7 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 9 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 10 N -0.90 -24.80 13.05 55.50 0.72 -24.08 16 11 Si 0.93 21.43 29.55 -169.99 -5.02 16.40 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 15 C 0.07 0.77 4.41 -3.82 -0.02 0.75 16 16 C -0.09 -1.00 2.90 -88.47 -0.26 -1.26 16 17 H 0.09 0.96 6.54 -51.93 -0.34 0.62 16 18 C -0.13 -1.01 6.42 -24.89 -0.16 -1.17 16 19 C 0.12 1.05 5.39 -3.06 -0.02 1.04 16 20 N -0.60 -7.54 3.33 -171.38 -0.57 -8.11 16 21 C 0.59 8.84 7.88 -12.01 -0.09 8.74 16 22 O -0.50 -9.49 17.12 5.39 0.09 -9.39 16 23 C 0.29 3.57 7.57 -157.07 -1.19 2.38 16 24 N -0.49 -4.42 6.86 -11.12 -0.08 -4.50 16 25 C 0.14 0.75 11.30 -17.22 -0.19 0.56 16 26 C -0.21 -0.90 10.18 -39.17 -0.40 -1.30 16 27 C 0.15 1.01 11.30 -17.23 -0.19 0.81 16 28 N -0.47 -5.60 10.13 -11.12 -0.11 -5.71 16 29 C 0.12 1.63 6.20 -2.53 -0.02 1.61 16 30 H 0.06 0.86 6.45 -51.93 -0.33 0.53 16 31 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.10 1.91 5.83 -51.93 -0.30 1.61 16 33 H 0.09 1.40 7.93 -51.93 -0.41 0.98 16 34 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 35 H 0.39 9.55 7.90 -40.82 -0.32 9.22 16 36 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.04 0.40 8.12 -51.93 -0.42 -0.02 16 38 H 0.08 0.84 7.89 -51.93 -0.41 0.43 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.54 8.04 -51.93 -0.42 0.13 16 41 H 0.07 0.61 7.53 -51.93 -0.39 0.22 16 42 H 0.07 0.64 7.39 -51.93 -0.38 0.25 16 43 H 0.18 0.26 8.06 -52.49 -0.42 -0.16 16 44 H 0.15 0.08 8.06 -52.49 -0.42 -0.34 16 45 H 0.18 0.61 8.06 -52.49 -0.42 0.19 16 46 H 0.08 1.02 8.00 -51.93 -0.42 0.61 16 47 H 0.09 1.48 8.04 -51.93 -0.42 1.06 16 LS Contribution 389.21 15.07 5.87 5.87 Total: -1.00 -36.61 389.21 -9.10 -45.71 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -6.61 Total: 7.09 kcal Atomic # 6 Polarization: 18.60 SS G_CDS: -2.35 Total: 16.26 kcal Atomic # 7 Polarization: -65.22 SS G_CDS: -1.15 Total: -66.36 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: 0.17 Total: -24.96 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.61 -9.10 -45.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481504978.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.452 kcal (2) G-P(sol) polarization free energy of solvation -36.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds