Wall clock time and date at job start Wed Apr 1 2020 06:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.50706 * 109.46563 * 66.04606 * 3 2 1 5 5 O 1.21287 * 120.00244 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99391 * 180.02562 * 4 3 2 7 7 C 1.37098 * 119.99877 * 179.97438 * 6 4 3 8 8 H 1.08002 * 119.99927 * 0.02562 * 7 6 4 9 9 C 1.38945 * 120.00234 * 179.97438 * 7 6 4 10 10 N 1.31408 * 119.99935 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00107 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47166 * 90.00294 * 11 9 7 13 13 H 1.48500 * 109.47200 * 210.00313 * 11 9 7 14 14 H 1.48505 * 109.46946 * 330.00311 * 11 9 7 15 15 C 1.46906 * 110.99793 * 236.04672 * 2 1 3 16 16 C 1.52996 * 109.47022 * 293.95609 * 15 2 1 17 17 H 1.09002 * 110.88993 * 57.42866 * 16 15 2 18 18 C 1.55161 * 111.00179 * 181.35050 * 16 15 2 19 19 C 1.54325 * 102.93982 * 153.57626 * 18 16 15 20 20 N 1.47020 * 107.27387 * 337.80320 * 19 18 16 21 21 C 1.34772 * 125.64845 * 178.97456 * 20 19 18 22 22 O 1.21468 * 120.00193 * 179.97438 * 21 20 19 23 23 C 1.48538 * 120.00327 * 359.96292 * 21 20 19 24 24 N 1.32464 * 119.18398 * 359.73145 * 23 21 20 25 25 C 1.32113 * 120.76975 * 179.71681 * 24 23 21 26 26 C 1.38802 * 119.15828 * 0.54295 * 25 24 23 27 27 C 1.38795 * 118.51115 * 359.73101 * 26 25 24 28 28 N 1.32110 * 119.16466 * 0.02562 * 27 26 25 29 29 C 1.47422 * 108.70076 * 358.94528 * 20 19 18 30 30 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 31 31 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 32 32 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 33 33 H 1.08994 * 109.47410 * 186.04624 * 3 2 1 34 34 H 1.08999 * 109.47216 * 306.04953 * 3 2 1 35 35 H 0.97003 * 120.00555 * 0.02562 * 6 4 3 36 36 H 0.96999 * 120.00290 * 179.97438 * 10 9 7 37 37 H 1.08997 * 109.46995 * 53.95554 * 15 2 1 38 38 H 1.09001 * 109.46848 * 173.95560 * 15 2 1 39 39 H 1.08999 * 110.72283 * 271.93502 * 18 16 15 40 40 H 1.08997 * 110.72047 * 35.21590 * 18 16 15 41 41 H 1.09000 * 109.87886 * 218.38581 * 19 18 16 42 42 H 1.08996 * 109.88489 * 97.22706 * 19 18 16 43 43 H 1.07997 * 120.42008 * 180.27097 * 25 24 23 44 44 H 1.08001 * 120.74412 * 179.75003 * 26 25 24 45 45 H 1.08001 * 120.41906 * 179.97438 * 27 26 25 46 46 H 1.09003 * 110.36512 * 265.28592 * 29 20 19 47 47 H 1.09004 * 110.36603 * 142.96184 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 8 1.0055 1.4452 2.1412 6 7 2.0182 3.3200 1.5234 7 6 1.6916 3.9349 2.7044 8 1 1.1293 3.3991 3.4548 9 6 2.0850 5.2472 2.9365 10 7 2.7697 5.8991 2.0238 11 14 1.6406 6.0847 4.5460 12 1 2.7173 5.8481 5.5409 13 1 1.4885 7.5444 4.3190 14 1 0.3627 5.5275 5.0577 15 6 1.9954 -0.7660 -1.1377 16 6 1.6314 -2.2426 -0.9704 17 1 0.5522 -2.3695 -0.8842 18 6 2.2004 -3.0913 -2.1380 19 6 2.3577 -4.4896 -1.5042 20 7 2.4369 -4.3024 -0.0481 21 6 2.5583 -5.2864 0.8648 22 8 2.6152 -5.0142 2.0472 23 6 2.6222 -6.7038 0.4252 24 7 2.5531 -6.9827 -0.8679 25 6 2.6124 -8.2318 -1.2940 26 6 2.7374 -9.2573 -0.3671 27 6 2.8013 -8.9287 0.9799 28 7 2.7411 -7.6580 1.3361 29 6 2.3622 -2.8602 0.2478 30 1 -0.3634 -1.0252 0.0708 31 1 -0.3633 0.4513 -0.9233 32 1 -0.3633 0.5740 0.8525 33 1 3.0798 1.3443 -0.1082 34 1 1.5612 1.9273 -0.8309 35 1 2.5229 3.8015 0.8493 36 1 3.0440 6.8153 2.1856 37 1 1.5611 -0.3872 -2.0628 38 1 3.0797 -0.6611 -1.1757 39 1 1.4975 -3.1222 -2.9706 40 1 3.1663 -2.7037 -2.4615 41 1 3.2710 -4.9606 -1.8676 42 1 1.4953 -5.1082 -1.7522 43 1 2.5599 -8.4525 -2.3499 44 1 2.7842 -10.2879 -0.6868 45 1 2.8982 -9.7021 1.7275 46 1 3.3635 -2.4400 0.3425 47 1 1.7903 -2.6892 1.1599 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481504978.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:55 Heat of formation + Delta-G solvation = -17.820575 kcal Electronic energy + Delta-G solvation = -29681.012375 eV Core-core repulsion = 25477.852494 eV Total energy + Delta-G solvation = -4203.159882 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.32000 -40.86356 -40.27855 -38.96324 -37.39409 -35.85583 -34.95724 -33.68371 -33.26012 -32.68229 -30.39830 -29.26954 -28.10463 -26.92073 -26.08163 -25.46080 -24.39917 -22.98020 -21.44483 -20.94464 -20.92922 -19.83696 -18.99541 -18.49032 -17.91337 -17.30416 -17.20888 -16.74690 -16.56544 -16.48195 -16.41993 -16.04278 -15.53787 -15.51356 -15.20436 -15.03931 -14.86381 -14.49788 -14.40179 -13.97458 -13.82853 -13.70631 -13.46367 -13.33134 -13.05941 -12.68966 -12.62118 -12.42763 -12.37306 -12.30727 -12.12251 -12.04419 -11.97892 -11.82110 -11.46225 -11.41910 -11.21098 -10.74670 -10.33662 -10.24284 -9.97896 -9.74913 -9.11421 -8.45478 -5.93525 -0.62303 0.08446 1.37445 1.40710 1.50398 1.53291 1.54646 2.08919 2.29025 2.73068 2.77362 2.83804 3.19295 3.21649 3.43248 3.63196 3.66710 3.71311 3.84597 3.92373 4.10625 4.25840 4.35500 4.38137 4.39040 4.46916 4.50895 4.55876 4.59137 4.68952 4.74197 4.77518 4.83921 4.86898 4.99303 5.05550 5.13234 5.24961 5.26864 5.30635 5.41984 5.44176 5.88845 5.91915 6.11346 6.26197 6.30847 6.63473 6.72482 6.99524 7.15438 7.59560 8.16669 8.71935 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021929 B = 0.001851 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.538174 B =15122.867075 C =15999.599406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.544 5.544 3 C 0.060 3.940 4 C 0.439 3.561 5 O -0.616 6.616 6 N -0.576 5.576 7 C -0.332 4.332 8 H 0.075 0.925 9 C -0.013 4.013 10 N -0.920 5.920 11 Si 0.991 3.009 12 H -0.273 1.273 13 H -0.268 1.268 14 H -0.275 1.275 15 C 0.068 3.932 16 C -0.086 4.086 17 H 0.083 0.917 18 C -0.116 4.116 19 C 0.118 3.882 20 N -0.597 5.597 21 C 0.578 3.422 22 O -0.565 6.565 23 C 0.261 3.739 24 N -0.492 5.492 25 C 0.136 3.864 26 C -0.178 4.178 27 C 0.127 3.873 28 N -0.516 5.516 29 C 0.121 3.879 30 H 0.072 0.928 31 H 0.035 0.965 32 H 0.049 0.951 33 H 0.110 0.890 34 H 0.072 0.928 35 H 0.396 0.604 36 H 0.277 0.723 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.222 0.778 44 H 0.203 0.797 45 H 0.204 0.796 46 H 0.068 0.932 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.466 -29.995 -19.652 35.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.268 5.268 3 C -0.071 4.071 4 C 0.227 3.773 5 O -0.502 6.502 6 N -0.214 5.214 7 C -0.461 4.461 8 H 0.093 0.907 9 C -0.212 4.212 10 N -0.561 5.561 11 Si 0.815 3.185 12 H -0.199 1.199 13 H -0.193 1.193 14 H -0.200 1.200 15 C -0.059 4.059 16 C -0.105 4.105 17 H 0.102 0.898 18 C -0.155 4.155 19 C -0.003 4.003 20 N -0.330 5.330 21 C 0.364 3.636 22 O -0.442 6.442 23 C -0.009 4.009 24 N -0.209 5.209 25 C -0.030 4.030 26 C -0.199 4.199 27 C -0.038 4.038 28 N -0.232 5.232 29 C -0.001 4.001 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.128 0.872 34 H 0.089 0.911 35 H 0.230 0.770 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.107 0.893 39 H 0.130 0.870 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.238 0.762 44 H 0.220 0.780 45 H 0.220 0.780 46 H 0.086 0.914 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.267 -29.362 -17.680 34.298 hybrid contribution -0.160 0.505 0.293 0.605 sum 1.107 -28.857 -17.387 33.709 Atomic orbital electron populations 1.22392 0.87151 1.02060 1.00335 1.61488 1.08728 1.12297 1.44325 1.21719 1.02103 0.89553 0.93718 1.20925 0.83569 0.82165 0.90647 1.90478 1.45172 1.65387 1.49204 1.41933 1.50241 1.11631 1.17565 1.19623 1.34329 0.96394 0.95787 0.90658 1.25987 0.96370 0.96605 1.02279 1.69663 1.38200 1.12650 1.35574 0.84966 0.78531 0.77497 0.77556 1.19855 1.19304 1.19994 1.22181 1.01067 0.91384 0.91260 1.22307 1.00201 0.93990 0.94021 0.89829 1.22818 1.03517 0.92162 0.96965 1.22319 1.03522 0.98008 0.76437 1.48437 1.69369 1.06242 1.08939 1.17499 0.77859 0.83750 0.84527 1.90798 1.51597 1.83438 1.18349 1.22198 0.98125 0.93892 0.86662 1.68570 1.12433 1.24928 1.14997 1.24254 0.89006 0.86151 1.03544 1.23728 0.97377 1.04832 0.93991 1.24062 0.90223 0.91713 0.97795 1.68145 1.11927 1.03066 1.40062 1.22222 1.00642 0.77980 0.99278 0.90900 0.94614 0.93252 0.87188 0.91060 0.76981 0.91349 0.91712 0.89288 0.86994 0.88764 0.89745 0.89919 0.76198 0.77998 0.77970 0.91397 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.92 8.98 127.69 1.15 2.07 16 2 N -0.54 -17.36 4.32 -927.03 -4.01 -21.37 16 3 C 0.06 2.07 5.45 85.56 0.47 2.54 16 4 C 0.44 21.52 7.47 87.66 0.66 22.17 16 5 O -0.62 -35.43 13.91 -3.05 -0.04 -35.47 16 6 N -0.58 -30.31 5.29 -306.98 -1.62 -31.93 16 7 C -0.33 -19.42 9.68 84.04 0.81 -18.60 16 8 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 9 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 10 N -0.92 -50.50 13.05 21.66 0.28 -50.21 16 11 Si 0.99 44.39 29.55 68.60 2.03 46.41 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 13 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 14 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 15 C 0.07 1.44 4.41 86.30 0.38 1.82 16 16 C -0.09 -1.69 2.90 -9.40 -0.03 -1.71 16 17 H 0.08 1.74 6.54 -2.39 -0.02 1.72 16 18 C -0.12 -1.37 6.42 31.78 0.20 -1.17 16 19 C 0.12 1.88 5.39 86.73 0.47 2.35 16 20 N -0.60 -15.65 3.33 -814.42 -2.71 -18.35 16 21 C 0.58 18.81 7.88 86.99 0.69 19.50 16 22 O -0.56 -24.05 17.12 -3.61 -0.06 -24.11 16 23 C 0.26 6.61 7.57 137.68 1.04 7.66 16 24 N -0.49 -8.07 6.86 -189.09 -1.30 -9.37 16 25 C 0.14 0.92 11.30 84.79 0.96 1.88 16 26 C -0.18 -0.80 10.18 22.54 0.23 -0.57 16 27 C 0.13 1.55 11.30 84.78 0.96 2.51 16 28 N -0.52 -12.81 10.13 -189.10 -1.92 -14.72 16 29 C 0.12 3.38 6.20 86.86 0.54 3.92 16 30 H 0.07 2.11 6.45 -2.39 -0.02 2.09 16 31 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.05 2.06 5.83 -2.38 -0.01 2.05 16 33 H 0.11 3.32 7.93 -2.39 -0.02 3.30 16 34 H 0.07 2.14 8.12 -2.39 -0.02 2.12 16 35 H 0.40 19.64 7.90 -92.71 -0.73 18.91 16 36 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 37 H 0.06 1.08 8.12 -2.39 -0.02 1.06 16 38 H 0.09 1.68 7.89 -2.39 -0.02 1.67 16 39 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.09 0.89 8.04 -2.39 -0.02 0.87 16 41 H 0.08 1.20 7.53 -2.39 -0.02 1.18 16 42 H 0.08 1.21 7.39 -2.39 -0.02 1.20 16 43 H 0.22 -0.63 8.06 -2.91 -0.02 -0.65 16 44 H 0.20 -1.07 8.06 -2.91 -0.02 -1.09 16 45 H 0.20 1.03 8.06 -2.91 -0.02 1.01 16 46 H 0.07 1.95 8.00 -2.39 -0.02 1.93 16 47 H 0.05 1.71 8.04 -2.39 -0.02 1.69 16 Total: -1.00 -89.54 389.21 -0.08 -89.63 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.27 Total: 25.38 kcal Atomic # 6 Polarization: 35.13 SS G_CDS: 8.99 Total: 44.12 kcal Atomic # 7 Polarization: -134.69 SS G_CDS: -11.27 Total: -145.96 kcal Atomic # 8 Polarization: -59.47 SS G_CDS: -0.10 Total: -59.58 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -89.54 -0.08 -89.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481504978.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.806 kcal (2) G-P(sol) polarization free energy of solvation -89.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds