Wall clock time and date at job start Wed Apr 1 2020 06:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46902 * 110.99965 * 2 1 4 4 C 1.50696 * 109.46978 * 293.95448 * 3 2 1 5 5 O 1.21295 * 120.00238 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00076 * 180.02562 * 4 3 2 7 7 C 1.37105 * 120.00244 * 180.02562 * 6 4 3 8 8 H 1.07998 * 119.99708 * 359.97438 * 7 6 4 9 9 C 1.38945 * 120.00017 * 179.97438 * 7 6 4 10 10 N 1.31413 * 119.99901 * 359.71836 * 9 7 6 11 11 Si 1.86800 * 120.00194 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47364 * 179.72210 * 11 9 7 13 13 H 1.48508 * 109.46883 * 299.72333 * 11 9 7 14 14 H 1.48497 * 109.46870 * 59.72143 * 11 9 7 15 15 C 1.46894 * 110.99860 * 123.95558 * 2 1 3 16 16 C 1.53004 * 109.47468 * 66.04453 * 15 2 1 17 17 H 1.08999 * 110.88519 * 308.88080 * 16 15 2 18 18 C 1.55156 * 111.00415 * 185.00018 * 16 15 2 19 19 C 1.54326 * 102.93896 * 206.42265 * 18 16 15 20 20 N 1.47019 * 107.27240 * 22.19645 * 19 18 16 21 21 C 1.34774 * 125.65052 * 181.10948 * 20 19 18 22 22 O 1.21470 * 120.00499 * 179.97438 * 21 20 19 23 23 C 1.48539 * 120.00007 * 359.96593 * 21 20 19 24 24 N 1.32463 * 119.18372 * 359.73351 * 23 21 20 25 25 C 1.32116 * 120.76773 * 179.75684 * 24 23 21 26 26 C 1.38800 * 119.16046 * 0.50894 * 25 24 23 27 27 C 1.38794 * 118.50861 * 359.74617 * 26 25 24 28 28 N 1.32110 * 119.16872 * 0.02562 * 27 26 25 29 29 C 1.47425 * 108.70343 * 1.05357 * 20 19 18 30 30 H 1.09005 * 109.47464 * 59.99891 * 1 2 3 31 31 H 1.08998 * 109.47370 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46911 * 300.00244 * 1 2 3 33 33 H 1.08999 * 109.46697 * 173.95887 * 3 2 1 34 34 H 1.08993 * 109.47253 * 53.95538 * 3 2 1 35 35 H 0.97004 * 119.99652 * 359.97438 * 6 4 3 36 36 H 0.97000 * 120.00371 * 0.28325 * 10 9 7 37 37 H 1.09004 * 109.46916 * 186.04690 * 15 2 1 38 38 H 1.09002 * 109.47248 * 306.04527 * 15 2 1 39 39 H 1.09000 * 110.71888 * 324.78336 * 18 16 15 40 40 H 1.08998 * 110.72100 * 88.06066 * 18 16 15 41 41 H 1.09004 * 109.87927 * 141.61028 * 19 18 16 42 42 H 1.09003 * 109.88203 * 262.62154 * 19 18 16 43 43 H 1.07995 * 120.41573 * 180.25560 * 25 24 23 44 44 H 1.08001 * 120.74149 * 179.72675 * 26 25 24 45 45 H 1.08005 * 120.41636 * 180.02562 * 27 26 25 46 46 H 1.09000 * 110.36749 * 217.03414 * 29 20 19 47 47 H 1.09002 * 110.36507 * 94.71081 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 8 1.0054 1.4452 -2.1411 6 7 2.0188 3.3198 -1.5237 7 6 1.6922 3.9347 -2.7048 8 1 1.1292 3.3991 -3.4548 9 6 2.0855 5.2470 -2.9368 10 7 2.7658 5.9006 -2.0220 11 14 1.6411 6.0846 -4.5463 12 1 2.1675 7.4732 -4.5436 13 1 2.2385 5.3310 -5.6779 14 1 0.1641 6.1154 -4.6969 15 6 1.9954 -0.7660 1.1375 16 6 1.6314 -2.2427 0.9703 17 1 0.5658 -2.3603 0.7732 18 6 2.0612 -3.0656 2.2134 19 6 2.2663 -4.4820 1.6361 20 7 2.5027 -4.3350 0.1925 21 6 2.7059 -5.3445 -0.6770 22 8 2.8914 -5.1049 -1.8533 23 6 2.7031 -6.7502 -0.1969 24 7 2.5047 -6.9927 1.0901 25 6 2.4912 -8.2311 1.5503 26 6 2.6989 -9.2826 0.6683 27 6 2.9088 -8.9911 -0.6723 28 7 2.9049 -7.7298 -1.0653 29 6 2.4794 -2.9005 -0.1467 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.0797 1.3443 0.1082 34 1 1.5612 1.9273 0.8309 35 1 2.5242 3.8010 -0.8499 36 1 2.9969 5.4656 -1.1863 37 1 3.0797 -0.6611 1.1756 38 1 1.5610 -0.3873 2.0628 39 1 2.9924 -2.6797 2.6283 40 1 1.2733 -3.0665 2.9666 41 1 3.1294 -4.9528 2.1070 42 1 1.3750 -5.0853 1.8087 43 1 2.3248 -8.4226 2.6000 44 1 2.6976 -10.3046 1.0176 45 1 3.0731 -9.7855 -1.3854 46 1 2.0104 -2.7481 -1.1187 47 1 3.4907 -2.4937 -0.1445 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481504980.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:06:02 Heat of formation + Delta-G solvation = 12.101636 kcal Electronic energy + Delta-G solvation = -29674.320795 eV Core-core repulsion = 25472.458437 eV Total energy + Delta-G solvation = -4201.862357 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.69037 -39.96200 -38.74781 -37.81644 -36.19894 -34.40170 -34.13954 -32.96079 -31.92549 -31.05601 -29.52886 -27.84126 -27.12458 -25.64416 -25.01531 -24.36399 -23.43119 -21.97716 -20.68170 -20.06572 -19.49539 -18.27071 -17.86320 -17.78596 -16.79864 -16.62971 -16.12918 -15.90725 -15.66457 -15.30272 -15.10854 -14.89868 -14.46337 -14.15081 -14.08675 -13.82298 -13.73849 -13.55840 -13.41467 -13.02718 -12.80088 -12.49124 -12.27039 -11.87972 -11.68724 -11.46687 -11.39699 -11.27321 -11.17490 -11.09442 -10.98872 -10.82217 -10.60822 -10.26752 -10.23882 -10.17193 -9.81161 -9.76039 -9.46555 -8.79350 -8.47064 -7.99858 -7.87190 -6.70864 -3.83669 -0.02056 0.52694 2.36394 2.38713 3.34946 3.38439 3.41720 3.42653 3.58611 3.72763 3.88352 3.92085 3.99449 4.29835 4.35022 4.38320 4.47688 4.52634 4.67191 4.76089 4.96594 5.07718 5.12676 5.19374 5.27648 5.33127 5.48423 5.55778 5.58044 5.62240 5.66563 5.70378 5.72741 5.81639 5.89994 5.94211 6.01876 6.04306 6.09043 6.19763 6.35615 6.55640 7.17330 7.20965 7.34869 7.40653 7.85987 7.90165 8.13052 8.65284 8.85811 9.52673 9.94165 10.72685 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022658 B = 0.001827 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.454478 B =15320.091505 C =16150.522899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.518 5.518 3 C 0.047 3.953 4 C 0.447 3.553 5 O -0.569 6.569 6 N -0.578 5.578 7 C -0.380 4.380 8 H 0.099 0.901 9 C -0.010 4.010 10 N -0.903 5.903 11 Si 1.091 2.909 12 H -0.280 1.280 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.065 3.935 16 C -0.095 4.095 17 H 0.090 0.910 18 C -0.133 4.133 19 C 0.119 3.881 20 N -0.600 5.600 21 C 0.592 3.408 22 O -0.500 6.500 23 C 0.291 3.709 24 N -0.490 5.490 25 C 0.142 3.858 26 C -0.211 4.211 27 C 0.146 3.854 28 N -0.468 5.468 29 C 0.122 3.878 30 H 0.096 0.904 31 H 0.061 0.939 32 H 0.014 0.986 33 H 0.087 0.913 34 H 0.046 0.954 35 H 0.375 0.625 36 H 0.260 0.740 37 H 0.077 0.923 38 H 0.038 0.962 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.176 0.824 44 H 0.154 0.846 45 H 0.177 0.823 46 H 0.091 0.909 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.158 -28.494 16.080 32.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.242 5.242 3 C -0.085 4.085 4 C 0.232 3.768 5 O -0.452 6.452 6 N -0.216 5.216 7 C -0.509 4.509 8 H 0.117 0.883 9 C -0.212 4.212 10 N -0.542 5.542 11 Si 0.917 3.083 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.211 1.211 15 C -0.064 4.064 16 C -0.115 4.115 17 H 0.108 0.892 18 C -0.171 4.171 19 C -0.004 4.004 20 N -0.334 5.334 21 C 0.375 3.625 22 O -0.371 6.371 23 C 0.021 3.979 24 N -0.207 5.207 25 C -0.024 4.024 26 C -0.233 4.233 27 C -0.020 4.020 28 N -0.183 5.183 29 C 0.000 4.000 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.033 0.967 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.208 0.792 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.056 0.944 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.193 0.807 44 H 0.172 0.828 45 H 0.194 0.806 46 H 0.109 0.891 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.151 -26.639 13.133 29.700 hybrid contribution -0.055 -1.935 2.573 3.220 sum 0.096 -28.574 15.706 32.606 Atomic orbital electron populations 1.22591 0.86767 1.01482 1.01947 1.61558 1.08747 1.12647 1.41250 1.21859 1.00603 0.89081 0.96941 1.19672 0.85428 0.82621 0.89031 1.90497 1.43420 1.64310 1.46993 1.41943 1.50226 1.11486 1.17952 1.20525 1.36435 0.98652 0.95326 0.88342 1.26486 0.95649 0.93607 1.05503 1.70902 1.36977 1.38975 1.07356 0.83137 0.76362 0.75948 0.72852 1.20467 1.20995 1.21072 1.22082 1.00352 0.91894 0.92025 1.22401 1.00755 0.94087 0.94232 0.89225 1.22802 1.02485 0.94275 0.97551 1.22089 1.02146 0.96672 0.79502 1.48271 1.69380 1.06674 1.09096 1.16835 0.78953 0.81798 0.84938 1.90864 1.47687 1.82941 1.15645 1.22879 0.94207 0.95243 0.85597 1.68632 1.12717 1.23851 1.15522 1.23379 0.90638 0.87266 1.01112 1.23205 1.01533 1.02614 0.95988 1.23439 0.90434 0.93390 0.94744 1.68276 1.10978 1.00459 1.38584 1.22335 1.00579 0.77023 1.00035 0.88600 0.92030 0.96734 0.89470 0.93569 0.79233 0.92822 0.90496 0.94412 0.90354 0.89915 0.90776 0.90687 0.80691 0.82811 0.80608 0.89092 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.03 60.06 0.54 0.86 16 2 N -0.52 -8.36 4.45 -244.37 -1.09 -9.45 16 3 C 0.05 0.82 5.45 -4.98 -0.03 0.79 16 4 C 0.45 10.63 7.51 -10.99 -0.08 10.55 16 5 O -0.57 -15.59 13.89 5.54 0.08 -15.51 16 6 N -0.58 -14.68 5.28 -10.96 -0.06 -14.74 16 7 C -0.38 -10.83 9.68 -14.93 -0.14 -10.97 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 9 C -0.01 -0.28 5.50 -17.47 -0.10 -0.38 16 10 N -0.90 -25.55 13.68 55.50 0.76 -24.79 16 11 Si 1.09 24.72 29.92 -169.99 -5.09 19.63 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 15 C 0.07 0.76 4.42 -3.83 -0.02 0.74 16 16 C -0.10 -1.00 2.99 -88.47 -0.26 -1.26 16 17 H 0.09 0.99 6.23 -51.93 -0.32 0.67 16 18 C -0.13 -1.00 6.42 -24.90 -0.16 -1.16 16 19 C 0.12 1.04 5.39 -3.06 -0.02 1.02 16 20 N -0.60 -7.42 3.33 -171.37 -0.57 -7.99 16 21 C 0.59 8.73 7.88 -12.01 -0.09 8.64 16 22 O -0.50 -9.37 17.12 5.39 0.09 -9.28 16 23 C 0.29 3.52 7.57 -157.07 -1.19 2.33 16 24 N -0.49 -4.36 6.86 -11.12 -0.08 -4.43 16 25 C 0.14 0.74 11.30 -17.22 -0.19 0.54 16 26 C -0.21 -0.87 10.18 -39.17 -0.40 -1.27 16 27 C 0.15 0.99 11.30 -17.23 -0.19 0.79 16 28 N -0.47 -5.53 10.13 -11.12 -0.11 -5.64 16 29 C 0.12 1.58 6.33 -2.53 -0.02 1.56 16 30 H 0.10 1.91 5.88 -51.93 -0.31 1.61 16 31 H 0.06 0.86 6.18 -51.93 -0.32 0.54 16 32 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.09 1.37 7.93 -51.93 -0.41 0.96 16 34 H 0.05 0.74 8.12 -51.93 -0.42 0.31 16 35 H 0.37 8.78 6.73 -40.82 -0.27 8.51 16 36 H 0.26 7.08 6.78 -40.82 -0.28 6.80 16 37 H 0.08 0.84 7.75 -51.93 -0.40 0.44 16 38 H 0.04 0.40 8.12 -51.93 -0.42 -0.03 16 39 H 0.08 0.53 8.04 -51.93 -0.42 0.11 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.61 7.52 -51.93 -0.39 0.22 16 42 H 0.07 0.63 7.40 -51.93 -0.38 0.25 16 43 H 0.18 0.24 8.06 -52.49 -0.42 -0.18 16 44 H 0.15 0.07 8.06 -52.49 -0.42 -0.36 16 45 H 0.18 0.59 8.06 -52.48 -0.42 0.16 16 46 H 0.09 1.45 8.04 -51.93 -0.42 1.03 16 47 H 0.07 0.97 7.91 -51.93 -0.41 0.56 16 LS Contribution 387.17 15.07 5.83 5.83 Total: -1.00 -38.00 387.17 -9.04 -47.04 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -6.46 Total: 6.55 kcal Atomic # 6 Polarization: 15.13 SS G_CDS: -2.35 Total: 12.78 kcal Atomic # 7 Polarization: -65.91 SS G_CDS: -1.14 Total: -67.05 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: 0.17 Total: -24.80 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -5.09 Total: 19.63 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.00 -9.04 -47.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481504980.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.146 kcal (2) G-P(sol) polarization free energy of solvation -38.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds