Wall clock time and date at job start Wed Apr 1 2020 06:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46902 * 110.99965 * 2 1 4 4 C 1.50696 * 109.46978 * 293.95448 * 3 2 1 5 5 O 1.21295 * 120.00238 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00076 * 180.02562 * 4 3 2 7 7 C 1.37105 * 120.00244 * 180.02562 * 6 4 3 8 8 H 1.07998 * 119.99708 * 359.97438 * 7 6 4 9 9 C 1.38945 * 120.00017 * 179.97438 * 7 6 4 10 10 N 1.31413 * 119.99901 * 359.71836 * 9 7 6 11 11 Si 1.86800 * 120.00194 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47364 * 179.72210 * 11 9 7 13 13 H 1.48508 * 109.46883 * 299.72333 * 11 9 7 14 14 H 1.48497 * 109.46870 * 59.72143 * 11 9 7 15 15 C 1.46894 * 110.99860 * 123.95558 * 2 1 3 16 16 C 1.53004 * 109.47468 * 66.04453 * 15 2 1 17 17 H 1.08999 * 110.88519 * 308.88080 * 16 15 2 18 18 C 1.55156 * 111.00415 * 185.00018 * 16 15 2 19 19 C 1.54326 * 102.93896 * 206.42265 * 18 16 15 20 20 N 1.47019 * 107.27240 * 22.19645 * 19 18 16 21 21 C 1.34774 * 125.65052 * 181.10948 * 20 19 18 22 22 O 1.21470 * 120.00499 * 179.97438 * 21 20 19 23 23 C 1.48539 * 120.00007 * 359.96593 * 21 20 19 24 24 N 1.32463 * 119.18372 * 359.73351 * 23 21 20 25 25 C 1.32116 * 120.76773 * 179.75684 * 24 23 21 26 26 C 1.38800 * 119.16046 * 0.50894 * 25 24 23 27 27 C 1.38794 * 118.50861 * 359.74617 * 26 25 24 28 28 N 1.32110 * 119.16872 * 0.02562 * 27 26 25 29 29 C 1.47425 * 108.70343 * 1.05357 * 20 19 18 30 30 H 1.09005 * 109.47464 * 59.99891 * 1 2 3 31 31 H 1.08998 * 109.47370 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46911 * 300.00244 * 1 2 3 33 33 H 1.08999 * 109.46697 * 173.95887 * 3 2 1 34 34 H 1.08993 * 109.47253 * 53.95538 * 3 2 1 35 35 H 0.97004 * 119.99652 * 359.97438 * 6 4 3 36 36 H 0.97000 * 120.00371 * 0.28325 * 10 9 7 37 37 H 1.09004 * 109.46916 * 186.04690 * 15 2 1 38 38 H 1.09002 * 109.47248 * 306.04527 * 15 2 1 39 39 H 1.09000 * 110.71888 * 324.78336 * 18 16 15 40 40 H 1.08998 * 110.72100 * 88.06066 * 18 16 15 41 41 H 1.09004 * 109.87927 * 141.61028 * 19 18 16 42 42 H 1.09003 * 109.88203 * 262.62154 * 19 18 16 43 43 H 1.07995 * 120.41573 * 180.25560 * 25 24 23 44 44 H 1.08001 * 120.74149 * 179.72675 * 26 25 24 45 45 H 1.08005 * 120.41636 * 180.02562 * 27 26 25 46 46 H 1.09000 * 110.36749 * 217.03414 * 29 20 19 47 47 H 1.09002 * 110.36507 * 94.71081 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 8 1.0054 1.4452 -2.1411 6 7 2.0188 3.3198 -1.5237 7 6 1.6922 3.9347 -2.7048 8 1 1.1292 3.3991 -3.4548 9 6 2.0855 5.2470 -2.9368 10 7 2.7658 5.9006 -2.0220 11 14 1.6411 6.0846 -4.5463 12 1 2.1675 7.4732 -4.5436 13 1 2.2385 5.3310 -5.6779 14 1 0.1641 6.1154 -4.6969 15 6 1.9954 -0.7660 1.1375 16 6 1.6314 -2.2427 0.9703 17 1 0.5658 -2.3603 0.7732 18 6 2.0612 -3.0656 2.2134 19 6 2.2663 -4.4820 1.6361 20 7 2.5027 -4.3350 0.1925 21 6 2.7059 -5.3445 -0.6770 22 8 2.8914 -5.1049 -1.8533 23 6 2.7031 -6.7502 -0.1969 24 7 2.5047 -6.9927 1.0901 25 6 2.4912 -8.2311 1.5503 26 6 2.6989 -9.2826 0.6683 27 6 2.9088 -8.9911 -0.6723 28 7 2.9049 -7.7298 -1.0653 29 6 2.4794 -2.9005 -0.1467 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.0797 1.3443 0.1082 34 1 1.5612 1.9273 0.8309 35 1 2.5242 3.8010 -0.8499 36 1 2.9969 5.4656 -1.1863 37 1 3.0797 -0.6611 1.1756 38 1 1.5610 -0.3873 2.0628 39 1 2.9924 -2.6797 2.6283 40 1 1.2733 -3.0665 2.9666 41 1 3.1294 -4.9528 2.1070 42 1 1.3750 -5.0853 1.8087 43 1 2.3248 -8.4226 2.6000 44 1 2.6976 -10.3046 1.0176 45 1 3.0731 -9.7855 -1.3854 46 1 2.0104 -2.7481 -1.1187 47 1 3.4907 -2.4937 -0.1445 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481504980.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:59 Heat of formation + Delta-G solvation = -17.675154 kcal Electronic energy + Delta-G solvation = -29675.612013 eV Core-core repulsion = 25472.458437 eV Total energy + Delta-G solvation = -4203.153576 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -42.33783 -40.90755 -40.41477 -39.02597 -37.51896 -36.20855 -34.97671 -33.71387 -33.14784 -32.69893 -30.42770 -29.28387 -28.12868 -26.80770 -26.04259 -25.47693 -24.44054 -23.07463 -21.47446 -21.31180 -21.01060 -19.93493 -19.02774 -18.51498 -18.18038 -17.36898 -17.22682 -16.98277 -16.75268 -16.55823 -16.35776 -15.82526 -15.56177 -15.48194 -15.29685 -15.24151 -14.99326 -14.51559 -14.41811 -14.03006 -13.88320 -13.78274 -13.38039 -13.34341 -13.04734 -12.70861 -12.67405 -12.42923 -12.36307 -12.06370 -12.02240 -11.92387 -11.87444 -11.83475 -11.48560 -11.44144 -11.23387 -10.76193 -10.35797 -10.31535 -10.08006 -9.77908 -9.18262 -8.91533 -6.04793 -0.63963 0.06917 1.48036 1.51922 1.52663 1.53760 1.81852 2.03526 2.39398 2.67375 2.75681 2.78538 3.17084 3.17487 3.28313 3.58611 3.63946 3.67107 3.81225 3.89046 4.08893 4.10379 4.28889 4.32494 4.36020 4.38323 4.42533 4.47398 4.52672 4.61642 4.69496 4.75746 4.78538 4.82222 4.95061 5.00976 5.08221 5.21128 5.24082 5.28744 5.40696 5.60946 5.87240 5.94711 6.00403 6.19969 6.26137 6.60523 6.70153 6.78277 6.97376 7.46851 7.97566 8.56492 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022658 B = 0.001827 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.454478 B =15320.091505 C =16150.522899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.544 5.544 3 C 0.060 3.940 4 C 0.443 3.557 5 O -0.611 6.611 6 N -0.589 5.589 7 C -0.408 4.408 8 H 0.070 0.930 9 C -0.043 4.043 10 N -0.917 5.917 11 Si 1.132 2.868 12 H -0.271 1.271 13 H -0.276 1.276 14 H -0.273 1.273 15 C 0.069 3.931 16 C -0.087 4.087 17 H 0.083 0.917 18 C -0.116 4.116 19 C 0.118 3.882 20 N -0.597 5.597 21 C 0.579 3.421 22 O -0.565 6.565 23 C 0.260 3.740 24 N -0.492 5.492 25 C 0.136 3.864 26 C -0.178 4.178 27 C 0.127 3.873 28 N -0.516 5.516 29 C 0.119 3.881 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.034 0.966 33 H 0.111 0.889 34 H 0.073 0.927 35 H 0.384 0.616 36 H 0.259 0.741 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.094 0.906 40 H 0.111 0.889 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.222 0.778 44 H 0.203 0.797 45 H 0.204 0.796 46 H 0.047 0.953 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.287 -30.726 20.093 36.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.269 5.269 3 C -0.071 4.071 4 C 0.231 3.769 5 O -0.496 6.496 6 N -0.229 5.229 7 C -0.538 4.538 8 H 0.088 0.912 9 C -0.241 4.241 10 N -0.556 5.556 11 Si 0.952 3.048 12 H -0.195 1.195 13 H -0.202 1.202 14 H -0.199 1.199 15 C -0.059 4.059 16 C -0.106 4.106 17 H 0.102 0.898 18 C -0.155 4.155 19 C -0.003 4.003 20 N -0.330 5.330 21 C 0.364 3.636 22 O -0.441 6.441 23 C -0.009 4.009 24 N -0.209 5.209 25 C -0.030 4.030 26 C -0.199 4.199 27 C -0.038 4.038 28 N -0.232 5.232 29 C -0.003 4.003 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.053 0.947 33 H 0.129 0.871 34 H 0.091 0.909 35 H 0.219 0.781 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.113 0.887 40 H 0.129 0.871 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.238 0.762 44 H 0.220 0.780 45 H 0.221 0.779 46 H 0.065 0.935 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.283 -28.898 17.239 33.651 hybrid contribution -0.106 -1.484 1.413 2.052 sum 0.177 -30.382 18.652 35.651 Atomic orbital electron populations 1.22419 0.87058 1.02120 1.00476 1.61475 1.08805 1.12122 1.44471 1.21733 1.02165 0.89727 0.93479 1.20917 0.83398 0.81877 0.90715 1.90484 1.44781 1.65162 1.49169 1.41996 1.51019 1.12347 1.17538 1.20485 1.37522 0.99393 0.96384 0.91205 1.27768 0.94742 0.93791 1.07771 1.70967 1.37692 1.39226 1.07761 0.82644 0.76881 0.75449 0.69788 1.19542 1.20150 1.19865 1.22177 1.01039 0.91425 0.91237 1.22325 0.99752 0.93796 0.94740 0.89826 1.22818 1.04189 0.92159 0.96298 1.22312 1.02922 0.97973 0.77079 1.48417 1.68016 1.05929 1.10597 1.17497 0.77969 0.83604 0.84509 1.90797 1.50864 1.84265 1.18213 1.22194 0.97886 0.93750 0.87090 1.68569 1.12667 1.26095 1.13616 1.24253 0.89356 0.86099 1.03253 1.23729 0.97220 1.04681 0.94268 1.24065 0.90470 0.92168 0.97073 1.68146 1.12478 1.02422 1.40128 1.22267 1.00496 0.78278 0.99295 0.93350 0.90408 0.94718 0.87119 0.90936 0.78144 0.92975 0.89339 0.91603 0.88694 0.87069 0.89665 0.89963 0.76210 0.77990 0.77949 0.93463 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 9.03 127.69 1.15 2.02 16 2 N -0.54 -17.15 4.45 -927.05 -4.12 -21.27 16 3 C 0.06 2.04 5.45 85.56 0.47 2.51 16 4 C 0.44 21.59 7.51 87.66 0.66 22.25 16 5 O -0.61 -35.13 13.89 -3.08 -0.04 -35.17 16 6 N -0.59 -30.67 5.28 -306.98 -1.62 -32.30 16 7 C -0.41 -24.04 9.68 84.04 0.81 -23.22 16 8 H 0.07 4.44 7.16 -2.91 -0.02 4.42 16 9 C -0.04 -2.37 5.50 84.92 0.47 -1.91 16 10 N -0.92 -52.05 13.68 21.66 0.30 -51.75 16 11 Si 1.13 50.14 29.92 68.60 2.05 52.19 16 12 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 13 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 14 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 15 C 0.07 1.41 4.42 86.31 0.38 1.79 16 16 C -0.09 -1.68 2.99 -9.40 -0.03 -1.71 16 17 H 0.08 1.75 6.23 -2.39 -0.01 1.73 16 18 C -0.12 -1.34 6.42 31.78 0.20 -1.13 16 19 C 0.12 1.84 5.39 86.73 0.47 2.31 16 20 N -0.60 -15.32 3.33 -814.41 -2.71 -18.03 16 21 C 0.58 18.53 7.88 86.99 0.69 19.21 16 22 O -0.56 -23.67 17.12 -3.62 -0.06 -23.73 16 23 C 0.26 6.50 7.57 137.68 1.04 7.55 16 24 N -0.49 -7.92 6.86 -189.09 -1.30 -9.22 16 25 C 0.14 0.88 11.30 84.78 0.96 1.84 16 26 C -0.18 -0.75 10.18 22.54 0.23 -0.52 16 27 C 0.13 1.51 11.30 84.78 0.96 2.47 16 28 N -0.52 -12.62 10.13 -189.09 -1.92 -14.53 16 29 C 0.12 3.24 6.33 86.85 0.55 3.78 16 30 H 0.05 2.01 5.88 -2.38 -0.01 2.00 16 31 H 0.08 2.16 6.18 -2.39 -0.01 2.14 16 32 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.11 3.26 7.93 -2.39 -0.02 3.24 16 34 H 0.07 2.12 8.12 -2.39 -0.02 2.10 16 35 H 0.38 18.22 6.73 -92.71 -0.62 17.60 16 36 H 0.26 14.19 6.78 -92.71 -0.63 13.56 16 37 H 0.09 1.65 7.75 -2.38 -0.02 1.64 16 38 H 0.07 1.06 8.12 -2.39 -0.02 1.04 16 39 H 0.09 0.85 8.04 -2.39 -0.02 0.83 16 40 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.09 1.18 7.52 -2.39 -0.02 1.16 16 42 H 0.08 1.19 7.40 -2.39 -0.02 1.17 16 43 H 0.22 -0.67 8.06 -2.91 -0.02 -0.69 16 44 H 0.20 -1.11 8.06 -2.91 -0.02 -1.14 16 45 H 0.20 0.97 8.06 -2.91 -0.02 0.95 16 46 H 0.05 1.68 8.04 -2.39 -0.02 1.66 16 47 H 0.07 1.92 7.91 -2.39 -0.02 1.90 16 Total: -1.00 -92.45 387.17 0.11 -92.33 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.53 Total: 24.24 kcal Atomic # 6 Polarization: 28.23 SS G_CDS: 9.01 Total: 37.23 kcal Atomic # 7 Polarization: -135.73 SS G_CDS: -11.37 Total: -147.10 kcal Atomic # 8 Polarization: -58.80 SS G_CDS: -0.10 Total: -58.91 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 2.05 Total: 52.19 kcal Total: -92.45 0.11 -92.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481504980.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.659 kcal (2) G-P(sol) polarization free energy of solvation -92.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds