Wall clock time and date at job start Wed Apr 1 2020 04:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.46741 * 2 1 4 4 C 1.34769 * 120.00332 * 266.63974 * 3 2 1 5 5 O 1.21553 * 120.00733 * 328.14517 * 4 3 2 6 6 C 1.47835 * 120.00010 * 148.14257 * 4 3 2 7 7 C 1.39950 * 120.93737 * 357.03886 * 6 4 3 8 8 N 1.32153 * 118.92105 * 179.69770 * 7 6 4 9 9 C 1.31863 * 120.96814 * 0.60660 * 8 7 6 10 10 N 1.31865 * 122.09763 * 359.65803 * 9 8 7 11 11 C 1.32153 * 120.96453 * 0.02805 * 10 9 8 12 12 C 1.46503 * 119.99609 * 86.64695 * 3 2 1 13 13 H 1.09000 * 110.78285 * 45.80872 * 12 3 2 14 14 C 1.54592 * 110.72416 * 169.05796 * 12 3 2 15 15 C 1.53994 * 105.14142 * 140.31459 * 14 12 3 16 16 N 1.47904 * 107.05827 * 1.22448 * 15 14 12 17 17 C 1.46896 * 111.00227 * 214.15763 * 16 15 14 18 18 C 1.50708 * 109.47044 * 154.47049 * 17 16 15 19 19 O 1.21290 * 119.99767 * 8.22705 * 18 17 16 20 20 N 1.34772 * 119.99821 * 188.22633 * 18 17 16 21 21 C 1.37100 * 120.00086 * 179.97438 * 20 18 17 22 22 H 1.07993 * 119.99636 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00210 * 179.72330 * 21 20 18 24 24 N 1.31412 * 120.00024 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 119.99791 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.47270 * 89.99899 * 25 23 21 27 27 H 1.48497 * 109.46987 * 209.99725 * 25 23 21 28 28 H 1.48499 * 109.47222 * 329.99853 * 25 23 21 29 29 C 1.48535 * 105.81750 * 334.67173 * 16 15 14 30 30 H 1.08995 * 109.47059 * 299.99089 * 1 2 3 31 31 H 1.09001 * 109.47273 * 59.99749 * 1 2 3 32 32 H 1.09008 * 109.46814 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.46680 * 240.01010 * 2 1 3 34 34 H 1.08992 * 109.47283 * 120.00866 * 2 1 3 35 35 H 1.07997 * 120.53847 * 359.96953 * 7 6 4 36 36 H 1.08006 * 118.95460 * 179.68759 * 9 8 7 37 37 H 1.08002 * 120.53353 * 179.97438 * 11 10 9 38 38 H 1.09001 * 110.30823 * 21.40390 * 14 12 3 39 39 H 1.08998 * 110.39502 * 259.27512 * 14 12 3 40 40 H 1.09003 * 109.92231 * 241.87589 * 15 14 12 41 41 H 1.08992 * 110.08697 * 120.67024 * 15 14 12 42 42 H 1.08991 * 109.47196 * 34.47034 * 17 16 15 43 43 H 1.08998 * 109.47279 * 274.46893 * 17 16 15 44 44 H 0.97002 * 120.00398 * 0.02562 * 20 18 17 45 45 H 0.96996 * 119.99657 * 179.97438 * 24 23 21 46 46 H 1.09005 * 110.66582 * 157.64088 * 29 16 15 47 47 H 1.08999 * 110.66830 * 280.76672 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3074 1.9938 -1.1651 5 8 2.7273 1.3466 -2.1044 6 6 2.1137 3.4531 -1.3009 7 6 1.5737 4.2078 -0.2533 8 7 1.4236 5.5107 -0.4155 9 6 1.7629 6.0972 -1.5468 10 7 2.2699 5.4235 -2.5607 11 6 2.4598 4.1180 -2.4826 12 6 2.1924 2.0965 1.2666 13 1 2.7015 1.4691 1.9983 14 6 2.9646 3.4176 1.0471 15 6 2.2745 4.4441 1.9645 16 7 1.1960 3.7294 2.6812 17 6 0.0421 4.6095 2.9088 18 6 -1.2069 3.7763 3.0403 19 8 -1.1258 2.5677 3.1028 20 7 -2.4137 4.3742 3.0884 21 6 -3.5500 3.6163 3.2075 22 1 -3.4778 2.5403 3.2632 23 6 -4.7939 4.2331 3.2630 24 7 -5.8829 3.5066 3.3776 25 14 -4.9180 6.0949 3.1745 26 1 -5.0492 6.5154 1.7563 27 1 -6.1086 6.5483 3.9373 28 1 -3.6950 6.7009 3.7594 29 6 0.8266 2.5805 1.8152 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 1.8933 -0.5137 -0.8902 34 1 1.8934 -0.5139 0.8898 35 1 1.2885 3.7338 0.6742 36 1 1.6216 7.1633 -1.6459 37 1 2.8752 3.5731 -3.3175 38 1 2.8902 3.7308 0.0058 39 1 4.0100 3.2984 1.3319 40 1 1.8514 5.2513 1.3665 41 1 2.9909 4.8483 2.6795 42 1 -0.0646 5.2937 2.0672 43 1 0.1958 5.1807 3.8243 44 1 -2.4786 5.3408 3.0381 45 1 -6.7512 3.9372 3.4167 46 1 0.3473 1.7959 2.4007 47 1 0.1783 2.9051 1.0013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481765470.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:53 Heat of formation + Delta-G solvation = 175.160730 kcal Electronic energy + Delta-G solvation = -32860.742907 eV Core-core repulsion = 28665.951323 eV Total energy + Delta-G solvation = -4194.791584 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -43.76518 -40.12413 -39.45346 -38.15508 -35.71096 -34.56118 -33.92089 -33.53537 -31.86031 -31.26956 -30.23714 -28.60540 -26.83893 -25.91945 -25.04160 -24.19144 -23.11888 -21.84042 -21.36920 -19.72610 -19.59542 -18.86798 -18.21982 -17.84173 -17.38186 -16.35750 -16.10153 -16.02433 -15.76403 -15.39768 -15.06451 -14.75994 -14.48235 -14.09758 -13.84741 -13.76304 -13.55375 -13.27249 -13.15242 -12.87632 -12.79419 -12.61006 -12.30034 -12.15660 -11.91362 -11.86660 -11.67989 -11.55946 -11.36141 -11.19883 -11.04707 -10.91907 -10.74854 -10.65033 -10.17707 -10.07305 -9.66326 -9.49427 -9.05262 -8.85019 -8.48788 -8.32845 -8.14814 -6.41882 -3.93799 0.07069 0.79543 2.37715 2.61063 2.96275 3.00830 3.09661 3.42426 3.56033 3.65280 3.77803 3.88082 4.01593 4.04053 4.13282 4.20909 4.36120 4.44624 4.62393 4.68278 4.98565 5.02157 5.05913 5.10669 5.14180 5.29426 5.33884 5.37511 5.44308 5.53623 5.57554 5.68000 5.72219 5.78703 5.81238 5.90358 5.92310 5.99981 6.28014 6.40693 6.44764 6.53693 6.83206 6.92433 7.10898 7.45499 7.69910 7.73994 8.02605 8.46425 8.82930 9.29986 9.67315 10.70497 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011866 B = 0.003917 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.155563 B = 7146.346899 C = 7969.059257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.117 3.883 3 N -0.617 5.617 4 C 0.587 3.413 5 O -0.518 6.518 6 C -0.301 4.301 7 C 0.196 3.804 8 N -0.554 5.554 9 C 0.328 3.672 10 N -0.542 5.542 11 C 0.206 3.794 12 C 0.129 3.871 13 H 0.112 0.888 14 C -0.233 4.233 15 C -0.011 4.011 16 N -0.492 5.492 17 C 0.025 3.975 18 C 0.441 3.559 19 O -0.567 6.567 20 N -0.580 5.580 21 C -0.308 4.308 22 H 0.121 0.879 23 C 0.045 3.955 24 N -0.876 5.876 25 Si 0.877 3.123 26 H -0.270 1.270 27 H -0.275 1.275 28 H -0.267 1.267 29 C 0.002 3.998 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.228 0.772 36 H 0.202 0.798 37 H 0.179 0.821 38 H 0.138 0.862 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.064 0.936 43 H 0.100 0.900 44 H 0.372 0.628 45 H 0.275 0.725 46 H 0.151 0.849 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.180 2.944 -6.630 18.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.005 4.005 3 N -0.351 5.351 4 C 0.375 3.625 5 O -0.394 6.394 6 C -0.309 4.309 7 C 0.033 3.967 8 N -0.270 5.270 9 C 0.042 3.958 10 N -0.256 5.256 11 C 0.044 3.956 12 C 0.025 3.975 13 H 0.130 0.870 14 C -0.270 4.270 15 C -0.139 4.139 16 N -0.217 5.217 17 C -0.106 4.106 18 C 0.227 3.773 19 O -0.451 6.451 20 N -0.218 5.218 21 C -0.437 4.437 22 H 0.139 0.861 23 C -0.159 4.159 24 N -0.515 5.515 25 Si 0.703 3.297 26 H -0.195 1.195 27 H -0.200 1.200 28 H -0.193 1.193 29 C -0.125 4.125 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.242 0.758 36 H 0.218 0.782 37 H 0.196 0.804 38 H 0.153 0.847 39 H 0.107 0.893 40 H 0.116 0.884 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.118 0.882 44 H 0.205 0.795 45 H 0.085 0.915 46 H 0.168 0.832 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 17.246 2.577 -6.697 18.679 hybrid contribution -0.431 1.138 -0.535 1.329 sum 16.815 3.715 -7.231 18.677 Atomic orbital electron populations 1.22333 0.94997 1.02866 1.03543 1.21518 0.94696 0.80609 1.03631 1.47530 1.67878 1.14850 1.04872 1.17643 0.76403 0.85907 0.82589 1.90745 1.41828 1.66668 1.40147 1.21945 1.11933 0.97402 0.99597 1.26131 0.80446 0.91025 0.99061 1.68616 1.22100 1.10555 1.25729 1.25370 0.85721 1.01425 0.83261 1.68605 1.17353 1.08315 1.31342 1.23437 0.87691 0.89687 0.94826 1.22454 0.96900 0.92974 0.85211 0.86975 1.25012 1.01870 0.95993 1.04102 1.24014 0.95678 0.97072 0.97121 1.64793 1.07426 1.07267 1.42217 1.22335 0.89882 0.95355 1.03031 1.19636 0.84031 0.88757 0.84858 1.90408 1.85469 1.14092 1.55124 1.42205 1.06164 1.08078 1.65317 1.19428 0.81909 0.94333 1.47989 0.86098 1.25050 0.95113 0.98463 0.97272 1.69614 0.98047 1.35670 1.48145 0.86708 0.78718 0.85198 0.79071 1.19547 1.20014 1.19287 1.24471 0.94333 0.97421 0.96296 0.90510 0.92838 0.91154 0.89589 0.90032 0.75763 0.78194 0.80439 0.84689 0.89274 0.88449 0.89557 0.91790 0.88205 0.79514 0.91454 0.83185 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 10.02 37.16 0.37 -1.84 16 2 C 0.12 1.31 6.35 -4.04 -0.03 1.28 16 3 N -0.62 -7.61 2.55 -165.11 -0.42 -8.03 16 4 C 0.59 7.99 6.84 -12.34 -0.08 7.90 16 5 O -0.52 -8.01 16.25 5.32 0.09 -7.93 16 6 C -0.30 -3.84 4.35 -104.69 -0.46 -4.29 16 7 C 0.20 2.52 5.40 -19.05 -0.10 2.41 16 8 N -0.55 -6.72 8.48 -60.40 -0.51 -7.24 16 9 C 0.33 3.49 12.27 -92.03 -1.13 2.36 16 10 N -0.54 -6.29 10.42 -14.24 -0.15 -6.44 16 11 C 0.21 2.44 10.88 -16.77 -0.18 2.25 16 12 C 0.13 1.53 3.45 -66.07 -0.23 1.30 16 13 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 14 C -0.23 -2.56 5.30 -27.65 -0.15 -2.70 16 15 C -0.01 -0.13 5.74 -2.75 -0.02 -0.15 16 16 N -0.49 -7.01 5.42 -256.06 -1.39 -8.40 16 17 C 0.03 0.39 5.96 -4.97 -0.03 0.36 16 18 C 0.44 9.11 7.19 -10.98 -0.08 9.03 16 19 O -0.57 -13.17 12.41 5.55 0.07 -13.10 16 20 N -0.58 -12.94 5.09 -10.96 -0.06 -13.00 16 21 C -0.31 -8.23 10.16 -14.93 -0.15 -8.38 16 22 H 0.12 3.68 7.39 -52.49 -0.39 3.29 16 23 C 0.04 1.18 5.50 -17.47 -0.10 1.09 16 24 N -0.88 -24.65 13.96 55.50 0.77 -23.87 16 25 Si 0.88 18.66 27.73 -169.99 -4.71 13.95 16 26 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 27 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 28 H -0.27 -5.17 6.52 56.52 0.37 -4.80 16 29 C 0.00 0.02 2.52 -1.90 0.00 0.02 16 30 H 0.08 1.11 6.29 -51.93 -0.33 0.78 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 33 H 0.09 0.97 7.30 -51.93 -0.38 0.59 16 34 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 35 H 0.23 3.01 0.33 -90.48 -0.03 2.98 16 36 H 0.20 1.40 8.06 -52.48 -0.42 0.98 16 37 H 0.18 1.84 7.75 -52.49 -0.41 1.44 16 38 H 0.14 1.61 1.83 -191.68 -0.35 1.26 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.10 1.17 3.60 -51.93 -0.19 0.98 16 41 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.92 7.38 -51.93 -0.38 0.53 16 43 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 44 H 0.37 7.39 5.76 -40.82 -0.24 7.15 16 45 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.15 2.61 5.07 -51.95 -0.26 2.35 16 47 H 0.06 0.94 6.08 -51.93 -0.32 0.62 16 LS Contribution 357.07 15.07 5.38 5.38 Total: -1.00 -31.11 357.07 -9.10 -40.21 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: -5.81 Total: 17.80 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: -2.36 Total: 10.65 kcal Atomic # 7 Polarization: -65.22 SS G_CDS: -1.75 Total: -66.97 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: 0.16 Total: -21.02 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -4.71 Total: 13.95 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.11 -9.10 -40.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481765470.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.370 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 184.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 175.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds