Wall clock time and date at job start Wed Apr 1 2020 04:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.46741 * 2 1 4 4 C 1.34769 * 120.00332 * 266.63974 * 3 2 1 5 5 O 1.21553 * 120.00733 * 328.14517 * 4 3 2 6 6 C 1.47835 * 120.00010 * 148.14257 * 4 3 2 7 7 C 1.39950 * 120.93737 * 357.03886 * 6 4 3 8 8 N 1.32153 * 118.92105 * 179.69770 * 7 6 4 9 9 C 1.31863 * 120.96814 * 0.60660 * 8 7 6 10 10 N 1.31865 * 122.09763 * 359.65803 * 9 8 7 11 11 C 1.32153 * 120.96453 * 0.02805 * 10 9 8 12 12 C 1.46503 * 119.99609 * 86.64695 * 3 2 1 13 13 H 1.09000 * 110.78285 * 45.80872 * 12 3 2 14 14 C 1.54592 * 110.72416 * 169.05796 * 12 3 2 15 15 C 1.53994 * 105.14142 * 140.31459 * 14 12 3 16 16 N 1.47904 * 107.05827 * 1.22448 * 15 14 12 17 17 C 1.46896 * 111.00227 * 214.15763 * 16 15 14 18 18 C 1.50708 * 109.47044 * 154.47049 * 17 16 15 19 19 O 1.21290 * 119.99767 * 8.22705 * 18 17 16 20 20 N 1.34772 * 119.99821 * 188.22633 * 18 17 16 21 21 C 1.37100 * 120.00086 * 179.97438 * 20 18 17 22 22 H 1.07993 * 119.99636 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00210 * 179.72330 * 21 20 18 24 24 N 1.31412 * 120.00024 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 119.99791 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.47270 * 89.99899 * 25 23 21 27 27 H 1.48497 * 109.46987 * 209.99725 * 25 23 21 28 28 H 1.48499 * 109.47222 * 329.99853 * 25 23 21 29 29 C 1.48535 * 105.81750 * 334.67173 * 16 15 14 30 30 H 1.08995 * 109.47059 * 299.99089 * 1 2 3 31 31 H 1.09001 * 109.47273 * 59.99749 * 1 2 3 32 32 H 1.09008 * 109.46814 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.46680 * 240.01010 * 2 1 3 34 34 H 1.08992 * 109.47283 * 120.00866 * 2 1 3 35 35 H 1.07997 * 120.53847 * 359.96953 * 7 6 4 36 36 H 1.08006 * 118.95460 * 179.68759 * 9 8 7 37 37 H 1.08002 * 120.53353 * 179.97438 * 11 10 9 38 38 H 1.09001 * 110.30823 * 21.40390 * 14 12 3 39 39 H 1.08998 * 110.39502 * 259.27512 * 14 12 3 40 40 H 1.09003 * 109.92231 * 241.87589 * 15 14 12 41 41 H 1.08992 * 110.08697 * 120.67024 * 15 14 12 42 42 H 1.08991 * 109.47196 * 34.47034 * 17 16 15 43 43 H 1.08998 * 109.47279 * 274.46893 * 17 16 15 44 44 H 0.97002 * 120.00398 * 0.02562 * 20 18 17 45 45 H 0.96996 * 119.99657 * 179.97438 * 24 23 21 46 46 H 1.09005 * 110.66582 * 157.64088 * 29 16 15 47 47 H 1.08999 * 110.66830 * 280.76672 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3074 1.9938 -1.1651 5 8 2.7273 1.3466 -2.1044 6 6 2.1137 3.4531 -1.3009 7 6 1.5737 4.2078 -0.2533 8 7 1.4236 5.5107 -0.4155 9 6 1.7629 6.0972 -1.5468 10 7 2.2699 5.4235 -2.5607 11 6 2.4598 4.1180 -2.4826 12 6 2.1924 2.0965 1.2666 13 1 2.7015 1.4691 1.9983 14 6 2.9646 3.4176 1.0471 15 6 2.2745 4.4441 1.9645 16 7 1.1960 3.7294 2.6812 17 6 0.0421 4.6095 2.9088 18 6 -1.2069 3.7763 3.0403 19 8 -1.1258 2.5677 3.1028 20 7 -2.4137 4.3742 3.0884 21 6 -3.5500 3.6163 3.2075 22 1 -3.4778 2.5403 3.2632 23 6 -4.7939 4.2331 3.2630 24 7 -5.8829 3.5066 3.3776 25 14 -4.9180 6.0949 3.1745 26 1 -5.0492 6.5154 1.7563 27 1 -6.1086 6.5483 3.9373 28 1 -3.6950 6.7009 3.7594 29 6 0.8266 2.5805 1.8152 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 1.8933 -0.5137 -0.8902 34 1 1.8934 -0.5139 0.8898 35 1 1.2885 3.7338 0.6742 36 1 1.6216 7.1633 -1.6459 37 1 2.8752 3.5731 -3.3175 38 1 2.8902 3.7308 0.0058 39 1 4.0100 3.2984 1.3319 40 1 1.8514 5.2513 1.3665 41 1 2.9909 4.8483 2.6795 42 1 -0.0646 5.2937 2.0672 43 1 0.1958 5.1807 3.8243 44 1 -2.4786 5.3408 3.0381 45 1 -6.7512 3.9372 3.4167 46 1 0.3473 1.7959 2.4007 47 1 0.1783 2.9051 1.0013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481765470.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:43 Heat of formation + Delta-G solvation = 150.412386 kcal Electronic energy + Delta-G solvation = -32861.816076 eV Core-core repulsion = 28665.951323 eV Total energy + Delta-G solvation = -4195.864753 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -44.73187 -41.18313 -40.63340 -39.63649 -36.79855 -36.13165 -35.18360 -34.50170 -33.78987 -32.33007 -31.31503 -29.67070 -28.28801 -26.85451 -25.99946 -25.84208 -24.09490 -22.96254 -22.36398 -21.37225 -20.70172 -20.27633 -19.59988 -18.80385 -18.36152 -17.58229 -17.34185 -17.03221 -16.97631 -16.71612 -16.50644 -15.97025 -15.81521 -15.20128 -15.06304 -14.86418 -14.72904 -14.56427 -14.32386 -14.23184 -14.15200 -13.91364 -13.75256 -13.21366 -13.02304 -12.95360 -12.87502 -12.66578 -12.58912 -12.44977 -12.31026 -12.08545 -11.97325 -11.95665 -11.68873 -11.47021 -11.21787 -10.41728 -10.26860 -10.15507 -9.98725 -9.74412 -9.40392 -8.41652 -6.01639 -0.84024 -0.13137 1.30201 1.33913 1.36471 1.43167 1.63442 1.90401 2.21979 2.51955 2.58502 2.76932 2.94388 3.06621 3.13101 3.15255 3.25923 3.28165 3.41533 3.56599 3.77642 3.96073 4.03808 4.10305 4.15788 4.19775 4.30647 4.35604 4.42871 4.45996 4.51243 4.56306 4.67239 4.79626 4.81998 4.87024 4.91415 5.14548 5.15255 5.29034 5.40736 5.51701 5.62655 5.68500 5.78613 5.99352 6.10428 6.57238 6.70284 6.82859 6.88066 7.37801 7.92698 8.75215 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.011866 B = 0.003917 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.155563 B = 7146.346899 C = 7969.059257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.117 3.883 3 N -0.616 5.616 4 C 0.585 3.415 5 O -0.543 6.543 6 C -0.314 4.314 7 C 0.195 3.805 8 N -0.560 5.560 9 C 0.331 3.669 10 N -0.548 5.548 11 C 0.208 3.792 12 C 0.136 3.864 13 H 0.129 0.871 14 C -0.226 4.226 15 C -0.007 4.007 16 N -0.497 5.497 17 C 0.036 3.964 18 C 0.444 3.556 19 O -0.596 6.596 20 N -0.587 5.587 21 C -0.323 4.323 22 H 0.062 0.938 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.955 3.045 26 H -0.261 1.261 27 H -0.276 1.276 28 H -0.229 1.229 29 C 0.010 3.990 30 H 0.050 0.950 31 H 0.037 0.963 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.220 0.780 36 H 0.238 0.762 37 H 0.188 0.812 38 H 0.134 0.866 39 H 0.111 0.889 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.084 0.916 43 H 0.128 0.872 44 H 0.388 0.612 45 H 0.278 0.722 46 H 0.118 0.882 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.658 6.088 -6.790 21.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.004 4.004 3 N -0.349 5.349 4 C 0.374 3.626 5 O -0.421 6.421 6 C -0.322 4.322 7 C 0.032 3.968 8 N -0.277 5.277 9 C 0.046 3.954 10 N -0.263 5.263 11 C 0.045 3.955 12 C 0.032 3.968 13 H 0.147 0.853 14 C -0.263 4.263 15 C -0.134 4.134 16 N -0.223 5.223 17 C -0.095 4.095 18 C 0.232 3.768 19 O -0.481 6.481 20 N -0.228 5.228 21 C -0.452 4.452 22 H 0.080 0.920 23 C -0.210 4.210 24 N -0.572 5.572 25 Si 0.776 3.224 26 H -0.186 1.186 27 H -0.201 1.201 28 H -0.152 1.152 29 C -0.117 4.117 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.122 0.878 35 H 0.235 0.765 36 H 0.254 0.746 37 H 0.204 0.796 38 H 0.149 0.851 39 H 0.129 0.871 40 H 0.117 0.883 41 H 0.126 0.874 42 H 0.102 0.898 43 H 0.146 0.854 44 H 0.223 0.777 45 H 0.088 0.912 46 H 0.135 0.865 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 19.763 5.726 -6.844 21.684 hybrid contribution -1.145 0.028 -0.512 1.254 sum 18.618 5.754 -7.356 20.829 Atomic orbital electron populations 1.22265 0.96249 1.03245 1.01344 1.21592 0.93491 0.80489 1.04839 1.47605 1.67301 1.15172 1.04871 1.17835 0.75953 0.86362 0.82449 1.90726 1.43227 1.67281 1.40818 1.21873 1.13158 0.96868 1.00285 1.25965 0.80445 0.91539 0.98857 1.68661 1.22495 1.10008 1.26513 1.26117 0.84096 1.02812 0.82348 1.68693 1.17789 1.08079 1.31733 1.23639 0.87081 0.89994 0.94749 1.22449 0.95315 0.93923 0.85158 0.85329 1.24957 1.02769 0.94840 1.03776 1.24054 0.94951 0.96835 0.97519 1.64830 1.07378 1.07290 1.42766 1.22320 0.87323 0.94693 1.05196 1.20758 0.85161 0.88980 0.81939 1.90451 1.86328 1.16101 1.55177 1.42048 1.05416 1.08531 1.66785 1.19001 0.84283 0.92445 1.49494 0.91960 1.26022 0.93930 1.04896 0.96187 1.69789 0.98912 1.38575 1.49921 0.85498 0.80113 0.77198 0.79641 1.18568 1.20100 1.15248 1.24148 0.95520 0.96860 0.95178 0.93138 0.94407 0.89579 0.89339 0.87776 0.76542 0.74626 0.79553 0.85052 0.87081 0.88333 0.87404 0.89817 0.85431 0.77667 0.91219 0.86474 0.94817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.49 10.02 71.98 0.72 -3.76 16 2 C 0.12 2.60 6.35 86.38 0.55 3.14 16 3 N -0.62 -14.86 2.55 -794.56 -2.03 -16.89 16 4 C 0.59 15.59 6.84 86.78 0.59 16.18 16 5 O -0.54 -16.60 16.25 -3.88 -0.06 -16.66 16 6 C -0.31 -7.63 4.35 -19.91 -0.09 -7.71 16 7 C 0.20 4.66 5.40 83.58 0.45 5.11 16 8 N -0.56 -12.04 8.48 -345.00 -2.93 -14.97 16 9 C 0.33 6.01 12.27 180.84 2.22 8.23 16 10 N -0.55 -11.44 10.42 -198.98 -2.07 -13.52 16 11 C 0.21 4.60 10.88 85.06 0.93 5.53 16 12 C 0.14 3.05 3.45 46.19 0.16 3.21 16 13 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 14 C -0.23 -4.38 5.30 30.00 0.16 -4.22 16 15 C -0.01 -0.13 5.74 86.45 0.50 0.36 16 16 N -0.50 -13.19 5.42 -964.02 -5.22 -18.41 16 17 C 0.04 1.02 5.96 85.56 0.51 1.53 16 18 C 0.44 18.36 7.19 87.66 0.63 18.99 16 19 O -0.60 -28.91 12.41 -3.06 -0.04 -28.94 16 20 N -0.59 -26.15 5.09 -306.99 -1.56 -27.71 16 21 C -0.32 -18.01 10.16 84.04 0.85 -17.16 16 22 H 0.06 4.11 7.39 -2.91 -0.02 4.09 16 23 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 24 N -0.93 -54.73 13.96 21.66 0.30 -54.43 16 25 Si 0.95 37.76 27.73 68.60 1.90 39.66 16 26 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 27 H -0.28 -10.91 7.11 99.48 0.71 -10.21 16 28 H -0.23 -7.57 6.52 99.48 0.65 -6.93 16 29 C 0.01 0.31 2.52 86.65 0.22 0.53 16 30 H 0.05 1.58 6.29 -2.39 -0.02 1.56 16 31 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.09 1.96 7.30 -2.38 -0.02 1.94 16 34 H 0.10 1.83 8.10 -2.39 -0.02 1.81 16 35 H 0.22 5.49 0.33 -38.60 -0.01 5.47 16 36 H 0.24 2.32 8.06 -2.91 -0.02 2.30 16 37 H 0.19 3.67 7.75 -2.91 -0.02 3.65 16 38 H 0.13 2.83 1.83 -133.66 -0.24 2.58 16 39 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.10 2.02 3.60 -2.39 -0.01 2.01 16 41 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.08 2.12 7.38 -2.39 -0.02 2.10 16 43 H 0.13 3.04 8.14 -2.39 -0.02 3.02 16 44 H 0.39 14.55 5.76 -92.71 -0.53 14.01 16 45 H 0.28 15.03 8.31 -92.71 -0.77 14.26 16 46 H 0.12 4.27 5.07 -2.69 -0.01 4.26 16 47 H 0.03 1.15 6.08 -2.39 -0.01 1.14 16 Total: -1.00 -72.75 357.07 -2.63 -75.38 By element: Atomic # 1 Polarization: 46.47 SS G_CDS: 0.21 Total: 46.68 kcal Atomic # 6 Polarization: 20.95 SS G_CDS: 8.87 Total: 29.82 kcal Atomic # 7 Polarization: -132.42 SS G_CDS: -13.51 Total: -145.94 kcal Atomic # 8 Polarization: -45.51 SS G_CDS: -0.10 Total: -45.61 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 1.90 Total: 39.66 kcal Total: -72.75 -2.63 -75.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481765470.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.794 kcal (2) G-P(sol) polarization free energy of solvation -72.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds