Wall clock time and date at job start Wed Apr 1 2020 04:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47451 * 2 1 4 4 C 1.34774 * 119.99924 * 270.00425 * 3 2 1 5 5 O 1.21279 * 119.99504 * 179.97438 * 4 3 2 6 6 C 1.50698 * 120.00442 * 359.97438 * 4 3 2 7 7 C 1.52993 * 109.47285 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.47387 * 180.02562 * 7 6 4 9 9 F 1.39908 * 109.47386 * 300.00293 * 7 6 4 10 10 F 1.39902 * 109.46964 * 60.00029 * 7 6 4 11 11 C 1.46497 * 119.99582 * 89.99926 * 3 2 1 12 12 H 1.08997 * 110.64967 * 358.30579 * 11 3 2 13 13 C 1.54601 * 110.72190 * 121.45882 * 11 3 2 14 14 C 1.53997 * 105.13751 * 140.49265 * 13 11 3 15 15 N 1.47894 * 107.06075 * 1.22127 * 14 13 11 16 16 C 1.46902 * 111.00050 * 214.15517 * 15 14 13 17 17 C 1.50699 * 109.46892 * 176.63888 * 16 15 14 18 18 O 1.21289 * 120.00552 * 6.13859 * 17 16 15 19 19 N 1.34777 * 119.99670 * 186.13614 * 17 16 15 20 20 C 1.37100 * 120.00175 * 180.02562 * 19 17 16 21 21 H 1.07998 * 119.99560 * 0.02562 * 20 19 17 22 22 C 1.38949 * 120.00031 * 180.02562 * 20 19 17 23 23 N 1.31408 * 120.00054 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99853 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47077 * 89.99902 * 24 22 20 26 26 H 1.48497 * 109.47144 * 210.00174 * 24 22 20 27 27 H 1.48501 * 109.46841 * 330.00125 * 24 22 20 28 28 C 1.48528 * 105.82068 * 334.67206 * 15 14 13 29 29 H 1.09002 * 109.47437 * 59.99812 * 1 2 3 30 30 H 1.09000 * 109.47670 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47404 * 299.99923 * 1 2 3 32 32 H 1.08998 * 109.46935 * 239.99883 * 2 1 3 33 33 H 1.09000 * 109.47064 * 120.00559 * 2 1 3 34 34 H 1.08998 * 109.47325 * 300.00952 * 6 4 3 35 35 H 1.09000 * 109.46542 * 60.00146 * 6 4 3 36 36 H 1.09000 * 109.46623 * 59.99835 * 8 7 6 37 37 H 1.08995 * 109.47553 * 180.02562 * 8 7 6 38 38 H 1.08998 * 109.47142 * 300.00704 * 8 7 6 39 39 H 1.08991 * 110.31087 * 21.57601 * 13 11 3 40 40 H 1.09000 * 110.38726 * 259.44992 * 13 11 3 41 41 H 1.08995 * 109.91250 * 241.86725 * 14 13 11 42 42 H 1.09004 * 109.91446 * 120.57863 * 14 13 11 43 43 H 1.08997 * 109.47090 * 56.64013 * 16 15 14 44 44 H 1.09001 * 109.46906 * 296.64200 * 16 15 14 45 45 H 0.97006 * 120.00292 * 0.02562 * 19 17 16 46 46 H 0.97002 * 119.99826 * 179.97438 * 23 22 20 47 47 H 1.09005 * 110.66641 * 157.64500 * 28 15 14 48 48 H 1.09000 * 110.66827 * 280.76869 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2429 2.0165 -1.1672 5 8 2.6468 3.1601 -1.1671 6 6 1.9922 1.3060 -2.4723 7 6 2.3241 2.2433 -3.6352 8 6 2.0689 1.5222 -4.9603 9 9 1.5153 3.3825 -3.5615 10 9 3.6692 2.6207 -3.5606 11 6 2.2625 2.0717 1.2688 12 1 2.0038 1.4305 2.1113 13 6 3.7345 2.5345 1.3653 14 6 3.6762 3.9262 2.0220 15 7 2.2534 4.2128 2.3059 16 6 1.9639 5.6447 2.1520 17 6 0.4920 5.8857 2.3678 18 8 -0.2241 4.9775 2.7333 19 7 -0.0286 7.1104 2.1548 20 6 -1.3676 7.3298 2.3516 21 1 -2.0050 6.5213 2.6778 22 6 -1.9044 8.5924 2.1314 23 7 -1.1287 9.5762 1.7351 24 14 -3.7287 8.8914 2.4003 25 1 -3.9596 9.3107 3.8061 26 1 -4.1956 9.9607 1.4817 27 1 -4.4809 7.6406 2.1269 28 6 1.4754 3.4048 1.3322 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.6226 0.4187 -2.5299 35 1 0.9443 1.0116 -2.5301 36 1 1.0209 1.2284 -5.0180 37 1 2.3058 2.1897 -5.7887 38 1 2.6987 0.6344 -5.0179 39 1 4.1753 2.6036 0.3709 40 1 4.3088 1.8469 1.9861 41 1 4.0770 4.6757 1.3397 42 1 4.2469 3.9226 2.9507 43 1 2.2412 5.9656 1.1479 44 1 2.5364 6.2121 2.8858 45 1 0.5439 7.8367 1.8622 46 1 -1.5036 10.4575 1.5810 47 1 0.4616 3.2360 1.6954 48 1 1.4597 3.8892 0.3559 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481774931.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:59 Heat of formation + Delta-G solvation = -184.132801 kcal Electronic energy + Delta-G solvation = -32607.462230 eV Core-core repulsion = 27946.401322 eV Total energy + Delta-G solvation = -4661.060907 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -49.87167 -47.90041 -41.64077 -40.33180 -38.70971 -36.91099 -35.97150 -34.31858 -33.39736 -32.86523 -31.01498 -30.06645 -29.00923 -27.96380 -26.05221 -24.48541 -23.41051 -22.46093 -22.06011 -21.06336 -20.04466 -19.88587 -18.61422 -18.38398 -17.98973 -17.71102 -17.09164 -16.89910 -16.58701 -16.49685 -16.27250 -15.87858 -15.77443 -15.17108 -14.87274 -14.86377 -14.71677 -14.54066 -14.41299 -14.26303 -13.85548 -13.83233 -13.76665 -13.59495 -13.39740 -13.24440 -13.13132 -13.08047 -12.94937 -12.69640 -12.60445 -12.45790 -12.33254 -12.32647 -12.13719 -12.05686 -11.91927 -11.72653 -11.50293 -10.67384 -10.32638 -10.06144 -9.69681 -9.39058 -8.49815 -5.99622 1.35227 1.37767 1.51891 1.52548 1.81438 1.98417 2.25755 2.79251 2.82894 3.11916 3.15977 3.26241 3.41624 3.46675 3.63680 3.73414 3.89174 4.05945 4.12542 4.22382 4.26531 4.32096 4.33892 4.36182 4.41355 4.44153 4.49936 4.60060 4.63911 4.72490 4.80676 4.83065 4.88199 4.95135 5.01176 5.03281 5.09058 5.15206 5.36303 5.39540 5.55489 5.79086 5.92255 6.03536 6.35157 6.55016 7.07430 7.11668 7.49413 8.04564 8.68156 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.010768 B = 0.003124 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.584980 B = 8961.439187 C = 9824.361635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.098 3.902 3 N -0.601 5.601 4 C 0.498 3.502 5 O -0.564 6.564 6 C -0.180 4.180 7 C 0.282 3.718 8 C -0.185 4.185 9 F -0.223 7.223 10 F -0.215 7.215 11 C 0.152 3.848 12 H 0.119 0.881 13 C -0.124 4.124 14 C 0.038 3.962 15 N -0.501 5.501 16 C 0.050 3.950 17 C 0.442 3.558 18 O -0.611 6.611 19 N -0.574 5.574 20 C -0.335 4.335 21 H 0.081 0.919 22 C -0.015 4.015 23 N -0.923 5.923 24 Si 0.998 3.002 25 H -0.267 1.267 26 H -0.270 1.270 27 H -0.272 1.272 28 C 0.034 3.966 29 H 0.049 0.951 30 H 0.096 0.904 31 H 0.035 0.965 32 H 0.116 0.884 33 H 0.102 0.898 34 H 0.166 0.834 35 H 0.147 0.853 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.119 0.881 39 H 0.064 0.936 40 H 0.102 0.898 41 H 0.034 0.966 42 H 0.099 0.901 43 H 0.047 0.953 44 H 0.112 0.888 45 H 0.394 0.606 46 H 0.278 0.722 47 H 0.063 0.937 48 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.138 -24.859 -10.924 28.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.023 4.023 3 N -0.333 5.333 4 C 0.286 3.714 5 O -0.443 6.443 6 C -0.220 4.220 7 C 0.246 3.754 8 C -0.242 4.242 9 F -0.205 7.205 10 F -0.196 7.196 11 C 0.048 3.952 12 H 0.137 0.863 13 C -0.163 4.163 14 C -0.089 4.089 15 N -0.225 5.225 16 C -0.082 4.082 17 C 0.230 3.770 18 O -0.497 6.497 19 N -0.211 5.211 20 C -0.464 4.464 21 H 0.099 0.901 22 C -0.215 4.215 23 N -0.564 5.564 24 Si 0.821 3.179 25 H -0.193 1.193 26 H -0.194 1.194 27 H -0.196 1.196 28 C -0.095 4.095 29 H 0.068 0.932 30 H 0.115 0.885 31 H 0.054 0.946 32 H 0.134 0.866 33 H 0.120 0.880 34 H 0.183 0.817 35 H 0.165 0.835 36 H 0.128 0.872 37 H 0.097 0.903 38 H 0.138 0.862 39 H 0.083 0.917 40 H 0.121 0.879 41 H 0.053 0.947 42 H 0.117 0.883 43 H 0.065 0.935 44 H 0.130 0.870 45 H 0.227 0.773 46 H 0.088 0.912 47 H 0.081 0.919 48 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 9.719 -24.767 -10.177 28.486 hybrid contribution -0.463 1.903 -0.695 2.078 sum 9.256 -22.865 -10.872 26.957 Atomic orbital electron populations 1.22259 0.96056 1.03548 1.01476 1.22021 0.94285 0.79795 1.06156 1.48076 1.65333 1.15572 1.04340 1.20993 0.77270 0.86500 0.86591 1.90772 1.46238 1.19425 1.87817 1.23053 1.09104 1.00708 0.89123 1.21502 0.72245 0.81961 0.99687 1.22816 1.06963 1.02470 0.91939 1.93016 1.73700 1.56075 1.97689 1.92989 1.36086 1.92876 1.97675 1.21920 0.94523 0.92596 0.86189 0.86287 1.22633 0.96208 0.96092 1.01332 1.22925 0.88755 0.96914 1.00340 1.64530 1.05480 1.04097 1.48422 1.21931 0.93346 0.91725 1.01174 1.20566 0.90571 0.82980 0.82930 1.90432 1.62867 1.43828 1.52586 1.41947 1.09289 1.09896 1.59966 1.19695 0.85091 0.96697 1.44900 0.90126 1.26143 1.04916 0.94325 0.96108 1.69696 1.37937 1.02541 1.46183 0.84868 0.76376 0.78074 0.78625 1.19250 1.19448 1.19627 1.23420 0.98096 0.94500 0.93467 0.93177 0.88503 0.94616 0.86598 0.87967 0.81687 0.83539 0.87190 0.90318 0.86210 0.91691 0.87931 0.94742 0.88260 0.93471 0.86981 0.77293 0.91237 0.91885 0.95116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.27 10.24 71.98 0.74 -1.53 16 2 C 0.10 1.03 5.91 86.38 0.51 1.54 16 3 N -0.60 -12.70 2.54 -791.18 -2.01 -14.72 16 4 C 0.50 12.70 6.57 87.66 0.58 13.28 16 5 O -0.56 -20.77 11.17 -3.03 -0.03 -20.80 16 6 C -0.18 -2.64 3.85 29.85 0.11 -2.52 16 7 C 0.28 5.84 1.85 30.59 0.06 5.89 16 8 C -0.18 -1.81 9.38 71.98 0.68 -1.13 16 9 F -0.22 -7.01 16.14 44.97 0.73 -6.29 16 10 F -0.22 -5.81 16.15 44.97 0.73 -5.09 16 11 C 0.15 4.07 3.54 46.20 0.16 4.23 16 12 H 0.12 2.74 7.88 -2.39 -0.02 2.72 16 13 C -0.12 -3.10 6.16 31.48 0.19 -2.91 16 14 C 0.04 1.15 6.70 86.45 0.58 1.73 16 15 N -0.50 -19.25 5.11 -887.58 -4.53 -23.78 16 16 C 0.05 2.13 5.31 85.56 0.45 2.58 16 17 C 0.44 23.60 7.41 87.66 0.65 24.25 16 18 O -0.61 -36.14 13.87 -3.06 -0.04 -36.19 16 19 N -0.57 -32.49 5.29 -306.99 -1.62 -34.11 16 20 C -0.33 -20.23 9.68 84.04 0.81 -19.42 16 21 H 0.08 5.13 7.16 -2.91 -0.02 5.11 16 22 C -0.02 -0.87 5.50 84.93 0.47 -0.41 16 23 N -0.92 -52.90 13.05 21.66 0.28 -52.62 16 24 Si 1.00 44.92 29.55 68.60 2.03 46.95 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 27 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 28 C 0.03 1.33 4.93 86.65 0.43 1.76 16 29 H 0.05 0.72 7.22 -2.39 -0.02 0.70 16 30 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.12 0.37 6.44 -2.39 -0.02 0.35 16 33 H 0.10 0.75 7.96 -2.39 -0.02 0.73 16 34 H 0.17 0.85 7.40 -2.39 -0.02 0.83 16 35 H 0.15 1.41 7.19 -2.39 -0.02 1.39 16 36 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.06 1.83 6.32 -2.39 -0.02 1.82 16 40 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.03 1.10 7.68 -2.39 -0.02 1.09 16 42 H 0.10 2.49 8.14 -2.38 -0.02 2.47 16 43 H 0.05 2.03 7.98 -2.39 -0.02 2.01 16 44 H 0.11 4.21 8.14 -2.39 -0.02 4.19 16 45 H 0.39 21.54 7.90 -92.70 -0.73 20.81 16 46 H 0.28 14.84 8.31 -92.71 -0.77 14.07 16 47 H 0.06 2.91 6.43 -2.38 -0.02 2.89 16 48 H 0.03 1.40 5.65 -2.39 -0.01 1.39 16 Total: -1.00 -86.88 387.88 2.19 -84.69 By element: Atomic # 1 Polarization: 34.34 SS G_CDS: 0.26 Total: 34.60 kcal Atomic # 6 Polarization: 20.93 SS G_CDS: 6.42 Total: 27.35 kcal Atomic # 7 Polarization: -117.34 SS G_CDS: -7.89 Total: -125.23 kcal Atomic # 8 Polarization: -56.91 SS G_CDS: -0.08 Total: -56.99 kcal Atomic # 9 Polarization: -12.83 SS G_CDS: 1.45 Total: -11.38 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -86.88 2.19 -84.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481774931.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.441 kcal (2) G-P(sol) polarization free energy of solvation -86.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds