Wall clock time and date at job start Wed Apr 1 2020 05:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 111.00165 * 2 1 4 4 C 1.52999 * 109.46491 * 66.05077 * 3 2 1 5 5 C 1.53004 * 109.47001 * 179.97438 * 4 3 2 6 6 C 1.53346 * 109.41904 * 295.13027 * 5 4 3 7 7 C 1.53195 * 109.14901 * 178.67276 * 6 5 4 8 8 N 1.46919 * 108.89273 * 54.57640 * 7 6 5 9 9 C 1.34778 * 120.63255 * 126.34238 * 8 7 6 10 10 O 1.21279 * 120.00169 * 359.97438 * 9 8 7 11 11 C 1.50698 * 120.00023 * 179.97438 * 9 8 7 12 12 F 1.39904 * 109.47365 * 185.00084 * 11 9 8 13 13 F 1.39900 * 109.47198 * 304.99729 * 11 9 8 14 14 C 1.46933 * 118.74003 * 306.32349 * 8 7 6 15 15 C 1.53034 * 109.46014 * 174.99893 * 5 4 3 16 16 C 1.46913 * 110.99856 * 236.05168 * 2 1 3 17 17 C 1.50696 * 109.46768 * 293.95447 * 16 2 1 18 18 O 1.21291 * 120.00233 * 359.97438 * 17 16 2 19 19 N 1.34780 * 119.99731 * 179.97438 * 17 16 2 20 20 C 1.37092 * 119.99904 * 179.97438 * 19 17 16 21 21 H 1.07999 * 120.00167 * 359.97438 * 20 19 17 22 22 C 1.38959 * 119.99887 * 180.02562 * 20 19 17 23 23 N 1.31403 * 119.99832 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99935 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47010 * 59.99724 * 24 22 20 26 26 H 1.48498 * 109.46982 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47133 * 300.00018 * 24 22 20 28 28 H 1.08997 * 109.47449 * 59.99572 * 1 2 3 29 29 H 1.09000 * 109.46956 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47017 * 299.99502 * 1 2 3 31 31 H 1.08991 * 109.47076 * 306.05089 * 3 2 1 32 32 H 1.08999 * 109.46965 * 186.04619 * 3 2 1 33 33 H 1.09001 * 109.47533 * 60.00207 * 4 3 2 34 34 H 1.08997 * 109.47446 * 299.99874 * 4 3 2 35 35 H 1.09001 * 109.45799 * 55.03056 * 5 4 3 36 36 H 1.08997 * 109.68637 * 58.70485 * 6 5 4 37 37 H 1.09002 * 109.47277 * 298.50741 * 6 5 4 38 38 H 1.09002 * 109.58720 * 294.71670 * 7 6 5 39 39 H 1.08996 * 109.58651 * 174.43567 * 7 6 5 40 40 H 1.09003 * 109.47692 * 65.00089 * 11 9 8 41 41 H 1.08994 * 109.58580 * 173.39910 * 14 8 7 42 42 H 1.09006 * 109.57831 * 293.67403 * 14 8 7 43 43 H 1.08994 * 109.50232 * 61.43679 * 15 5 4 44 44 H 1.09007 * 109.52628 * 301.35340 * 15 5 4 45 45 H 1.08997 * 109.47022 * 53.95108 * 16 2 1 46 46 H 1.08994 * 109.46907 * 173.95056 * 16 2 1 47 47 H 0.97004 * 119.99663 * 0.02562 * 19 17 16 48 48 H 0.97002 * 120.00033 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0573 1.3184 5 6 2.1804 3.4855 1.3187 6 6 3.7130 3.4427 1.2893 7 6 4.2551 4.8751 1.2563 8 7 3.6923 5.6230 2.3888 9 6 4.4989 6.2708 3.2527 10 8 5.7015 6.2396 3.0994 11 6 3.9063 7.0341 4.4091 12 9 4.9233 7.7098 5.0920 13 9 2.9733 7.9590 3.9283 14 6 2.2335 5.6516 2.5615 15 6 1.7110 4.2117 2.5814 16 6 1.9954 -0.7659 -1.1378 17 6 1.6369 -2.2203 -0.9731 18 8 1.0054 -2.5832 -0.0032 19 7 2.0179 -3.1178 -1.9036 20 6 1.6922 -4.4410 -1.7536 21 1 1.1306 -4.7643 -0.8896 22 6 2.0855 -5.3664 -2.7127 23 7 2.7692 -4.9731 -3.7637 24 14 1.6422 -7.1695 -2.5079 25 1 0.1652 -7.3132 -2.4551 26 1 2.1736 -7.9436 -3.6584 27 1 2.2351 -7.6849 -1.2477 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.5611 1.9273 -0.8308 32 1 3.0797 1.3443 -0.1082 33 1 2.0659 1.5013 2.1492 34 1 0.5473 2.0843 1.4267 35 1 1.8156 4.0149 0.4385 36 1 4.0483 2.9062 0.4017 37 1 4.0795 2.9355 2.1817 38 1 3.9646 5.3544 0.3214 39 1 5.3421 4.8563 1.3348 40 1 3.4123 6.3392 5.0882 41 1 1.9865 6.1430 3.5025 42 1 1.7783 6.1964 1.7343 43 1 2.0962 3.6971 3.4616 44 1 0.6214 4.2205 2.6129 45 1 1.5610 -0.3871 -2.0629 46 1 3.0796 -0.6610 -1.1758 47 1 2.5233 -2.8276 -2.6791 48 1 3.0434 -5.6190 -4.4334 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482498793.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:24 Heat of formation + Delta-G solvation = -168.369234 kcal Electronic energy + Delta-G solvation = -30407.852580 eV Core-core repulsion = 25747.475232 eV Total energy + Delta-G solvation = -4660.377348 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.72609 -47.73651 -40.68562 -38.84795 -38.22056 -36.59200 -34.47564 -33.77834 -31.86287 -31.25650 -30.34119 -28.45585 -27.66593 -26.11889 -24.75643 -23.77785 -23.23124 -21.49494 -20.58369 -20.07509 -19.15126 -18.74721 -18.28058 -17.83786 -17.76338 -16.56212 -16.12873 -15.74465 -15.38601 -15.28389 -15.25161 -14.72103 -14.69318 -14.52515 -14.30082 -14.24262 -13.97247 -13.89949 -13.66367 -13.57303 -13.33465 -13.21798 -12.88524 -12.73973 -12.43650 -12.09966 -11.97332 -11.74216 -11.53576 -11.39017 -11.22561 -11.18709 -11.08212 -10.88437 -10.80962 -10.51993 -10.44612 -10.29884 -10.21238 -9.47079 -9.31302 -8.44636 -7.97937 -7.84404 -6.41930 -3.82697 1.61705 1.97237 3.11533 3.19544 3.25300 3.29531 3.37747 3.89789 3.92767 3.97097 4.05866 4.19058 4.21632 4.35702 4.46633 4.57930 4.73865 4.83942 4.95932 5.02221 5.14894 5.21830 5.24604 5.27437 5.31434 5.39102 5.46507 5.54040 5.60184 5.67793 5.72627 5.73252 5.84992 5.90979 5.94917 6.00534 6.08386 6.21933 6.29122 6.55884 6.56571 7.24194 7.28123 7.41722 7.54721 8.06150 8.61919 9.17942 9.54469 10.06547 10.75764 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.029590 B = 0.001572 C = 0.001537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.050716 B =17812.847036 C =18209.299716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.520 5.520 3 C 0.053 3.947 4 C -0.109 4.109 5 C -0.087 4.087 6 C -0.132 4.132 7 C 0.109 3.891 8 N -0.594 5.594 9 C 0.473 3.527 10 O -0.504 6.504 11 C 0.257 3.743 12 F -0.175 7.175 13 F -0.187 7.187 14 C 0.098 3.902 15 C -0.131 4.131 16 C 0.046 3.954 17 C 0.444 3.556 18 O -0.578 6.578 19 N -0.565 5.565 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.012 0.988 29 H 0.094 0.906 30 H 0.060 0.940 31 H 0.028 0.972 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.137 0.863 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.046 0.954 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.031 25.193 10.882 27.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.243 5.243 3 C -0.075 4.075 4 C -0.147 4.147 5 C -0.106 4.106 6 C -0.170 4.170 7 C -0.012 4.012 8 N -0.328 5.328 9 C 0.256 3.744 10 O -0.378 6.378 11 C 0.200 3.800 12 F -0.156 7.156 13 F -0.168 7.168 14 C -0.024 4.024 15 C -0.169 4.169 16 C -0.086 4.086 17 C 0.229 3.771 18 O -0.462 6.462 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.030 0.970 29 H 0.113 0.887 30 H 0.079 0.921 31 H 0.046 0.954 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.154 0.846 41 H 0.104 0.896 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.064 0.936 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.564 24.612 11.708 27.261 hybrid contribution -0.199 -0.207 -1.250 1.283 sum -0.762 24.405 10.458 26.563 Atomic orbital electron populations 1.22557 0.86970 1.04333 0.98792 1.61573 1.08596 1.11537 1.42615 1.22204 1.00092 0.88765 0.96414 1.21608 1.01096 0.93579 0.98447 1.21208 0.95025 0.96561 0.97814 1.22120 0.95584 0.95435 1.03840 1.21793 1.00309 0.91635 0.87483 1.48128 1.07321 1.49999 1.27340 1.21030 0.87794 0.81415 0.84165 1.90821 1.13814 1.60867 1.72330 1.21619 0.79789 0.86183 0.92370 1.93072 1.60987 1.81793 1.79775 1.93045 1.65309 1.69081 1.89398 1.22039 0.78697 0.98339 1.03309 1.22001 1.01520 0.94228 0.99145 1.21859 1.00585 0.94186 0.91927 1.19752 0.85439 0.86683 0.85207 1.90478 1.43950 1.80156 1.31631 1.41869 1.49459 1.07363 1.21448 1.19647 1.33048 0.82316 1.07882 0.87980 1.25259 0.96817 1.00558 0.95313 1.69600 1.38041 1.35863 1.10858 0.85920 0.78876 0.81718 0.77709 1.19946 1.20993 1.19894 0.96957 0.88743 0.92102 0.95381 0.90897 0.90836 0.91578 0.90828 0.89675 0.90984 0.90728 0.88639 0.84601 0.89620 0.90084 0.91007 0.89923 0.93608 0.89520 0.77512 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 8.96 60.06 0.54 0.87 16 2 N -0.52 -8.28 4.50 -244.37 -1.10 -9.38 16 3 C 0.05 0.61 4.72 -3.82 -0.02 0.59 16 4 C -0.11 -0.99 4.61 -26.73 -0.12 -1.11 16 5 C -0.09 -0.55 2.15 -90.42 -0.19 -0.75 16 6 C -0.13 -0.90 5.16 -26.45 -0.14 -1.04 16 7 C 0.11 0.77 6.42 -3.71 -0.02 0.74 16 8 N -0.59 -4.11 2.97 -172.77 -0.51 -4.62 16 9 C 0.47 4.18 7.55 -10.99 -0.08 4.09 16 10 O -0.50 -6.50 16.03 5.56 0.09 -6.41 16 11 C 0.26 1.63 4.62 36.00 0.17 1.80 16 12 F -0.18 -1.61 16.95 2.25 0.04 -1.57 16 13 F -0.19 -1.23 15.53 2.25 0.03 -1.20 16 14 C 0.10 0.44 5.90 -3.71 -0.02 0.42 16 15 C -0.13 -0.63 5.36 -26.62 -0.14 -0.78 16 16 C 0.05 0.80 5.45 -4.97 -0.03 0.78 16 17 C 0.44 10.36 7.47 -10.99 -0.08 10.28 16 18 O -0.58 -15.38 13.91 5.55 0.08 -15.30 16 19 N -0.56 -14.21 5.29 -10.96 -0.06 -14.26 16 20 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 21 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 24 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.09 1.83 5.82 -51.93 -0.30 1.53 16 30 H 0.06 0.81 6.47 -51.93 -0.34 0.48 16 31 H 0.03 0.30 8.12 -51.93 -0.42 -0.12 16 32 H 0.07 0.78 6.32 -51.93 -0.33 0.45 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.60 6.55 -51.93 -0.34 0.26 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.58 6.52 -51.93 -0.34 0.25 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.10 0.81 7.00 -51.93 -0.36 0.45 16 40 H 0.14 0.31 7.91 -51.93 -0.41 -0.11 16 41 H 0.09 0.26 5.34 -51.93 -0.28 -0.02 16 42 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 45 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 46 H 0.09 1.37 7.93 -51.93 -0.41 0.96 16 47 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 48 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 387.29 15.07 5.84 5.84 Total: -1.00 -33.75 387.29 -7.45 -41.21 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -7.17 Total: 5.53 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -0.39 Total: 7.95 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.95 Total: -51.96 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: 0.17 Total: -21.71 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.07 Total: -2.77 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.75 -7.45 -41.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482498793.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.163 kcal (2) G-P(sol) polarization free energy of solvation -33.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds