Wall clock time and date at job start Wed Apr 1 2020 05:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 111.00165 * 2 1 4 4 C 1.52999 * 109.46491 * 66.05077 * 3 2 1 5 5 C 1.53004 * 109.47001 * 179.97438 * 4 3 2 6 6 C 1.53346 * 109.41904 * 295.13027 * 5 4 3 7 7 C 1.53195 * 109.14901 * 178.67276 * 6 5 4 8 8 N 1.46919 * 108.89273 * 54.57640 * 7 6 5 9 9 C 1.34778 * 120.63255 * 126.34238 * 8 7 6 10 10 O 1.21279 * 120.00169 * 359.97438 * 9 8 7 11 11 C 1.50698 * 120.00023 * 179.97438 * 9 8 7 12 12 F 1.39904 * 109.47365 * 185.00084 * 11 9 8 13 13 F 1.39900 * 109.47198 * 304.99729 * 11 9 8 14 14 C 1.46933 * 118.74003 * 306.32349 * 8 7 6 15 15 C 1.53034 * 109.46014 * 174.99893 * 5 4 3 16 16 C 1.46913 * 110.99856 * 236.05168 * 2 1 3 17 17 C 1.50696 * 109.46768 * 293.95447 * 16 2 1 18 18 O 1.21291 * 120.00233 * 359.97438 * 17 16 2 19 19 N 1.34780 * 119.99731 * 179.97438 * 17 16 2 20 20 C 1.37092 * 119.99904 * 179.97438 * 19 17 16 21 21 H 1.07999 * 120.00167 * 359.97438 * 20 19 17 22 22 C 1.38959 * 119.99887 * 180.02562 * 20 19 17 23 23 N 1.31403 * 119.99832 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99935 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47010 * 59.99724 * 24 22 20 26 26 H 1.48498 * 109.46982 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47133 * 300.00018 * 24 22 20 28 28 H 1.08997 * 109.47449 * 59.99572 * 1 2 3 29 29 H 1.09000 * 109.46956 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47017 * 299.99502 * 1 2 3 31 31 H 1.08991 * 109.47076 * 306.05089 * 3 2 1 32 32 H 1.08999 * 109.46965 * 186.04619 * 3 2 1 33 33 H 1.09001 * 109.47533 * 60.00207 * 4 3 2 34 34 H 1.08997 * 109.47446 * 299.99874 * 4 3 2 35 35 H 1.09001 * 109.45799 * 55.03056 * 5 4 3 36 36 H 1.08997 * 109.68637 * 58.70485 * 6 5 4 37 37 H 1.09002 * 109.47277 * 298.50741 * 6 5 4 38 38 H 1.09002 * 109.58720 * 294.71670 * 7 6 5 39 39 H 1.08996 * 109.58651 * 174.43567 * 7 6 5 40 40 H 1.09003 * 109.47692 * 65.00089 * 11 9 8 41 41 H 1.08994 * 109.58580 * 173.39910 * 14 8 7 42 42 H 1.09006 * 109.57831 * 293.67403 * 14 8 7 43 43 H 1.08994 * 109.50232 * 61.43679 * 15 5 4 44 44 H 1.09007 * 109.52628 * 301.35340 * 15 5 4 45 45 H 1.08997 * 109.47022 * 53.95108 * 16 2 1 46 46 H 1.08994 * 109.46907 * 173.95056 * 16 2 1 47 47 H 0.97004 * 119.99663 * 0.02562 * 19 17 16 48 48 H 0.97002 * 120.00033 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0573 1.3184 5 6 2.1804 3.4855 1.3187 6 6 3.7130 3.4427 1.2893 7 6 4.2551 4.8751 1.2563 8 7 3.6923 5.6230 2.3888 9 6 4.4989 6.2708 3.2527 10 8 5.7015 6.2396 3.0994 11 6 3.9063 7.0341 4.4091 12 9 4.9233 7.7098 5.0920 13 9 2.9733 7.9590 3.9283 14 6 2.2335 5.6516 2.5615 15 6 1.7110 4.2117 2.5814 16 6 1.9954 -0.7659 -1.1378 17 6 1.6369 -2.2203 -0.9731 18 8 1.0054 -2.5832 -0.0032 19 7 2.0179 -3.1178 -1.9036 20 6 1.6922 -4.4410 -1.7536 21 1 1.1306 -4.7643 -0.8896 22 6 2.0855 -5.3664 -2.7127 23 7 2.7692 -4.9731 -3.7637 24 14 1.6422 -7.1695 -2.5079 25 1 0.1652 -7.3132 -2.4551 26 1 2.1736 -7.9436 -3.6584 27 1 2.2351 -7.6849 -1.2477 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.5611 1.9273 -0.8308 32 1 3.0797 1.3443 -0.1082 33 1 2.0659 1.5013 2.1492 34 1 0.5473 2.0843 1.4267 35 1 1.8156 4.0149 0.4385 36 1 4.0483 2.9062 0.4017 37 1 4.0795 2.9355 2.1817 38 1 3.9646 5.3544 0.3214 39 1 5.3421 4.8563 1.3348 40 1 3.4123 6.3392 5.0882 41 1 1.9865 6.1430 3.5025 42 1 1.7783 6.1964 1.7343 43 1 2.0962 3.6971 3.4616 44 1 0.6214 4.2205 2.6129 45 1 1.5610 -0.3871 -2.0629 46 1 3.0796 -0.6610 -1.1758 47 1 2.5233 -2.8276 -2.6791 48 1 3.0434 -5.6190 -4.4334 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482498793.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:54:21 Heat of formation + Delta-G solvation = -192.203265 kcal Electronic energy + Delta-G solvation = -30408.886101 eV Core-core repulsion = 25747.475232 eV Total energy + Delta-G solvation = -4661.410869 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -50.26080 -48.29222 -41.29129 -40.37267 -39.13935 -37.79510 -35.92588 -35.08341 -33.26751 -32.34500 -31.16981 -29.40866 -28.73583 -27.22484 -26.27708 -24.35035 -24.17930 -22.27323 -21.37673 -20.96479 -20.59316 -19.83962 -19.27220 -18.79151 -18.34026 -17.77772 -17.18667 -16.62682 -16.58042 -16.53616 -16.08909 -15.86945 -15.73905 -15.39550 -15.27131 -15.13228 -15.07786 -14.66563 -14.60590 -14.50654 -14.23672 -14.08452 -13.77681 -13.65575 -13.41595 -13.29117 -13.08743 -12.96082 -12.81576 -12.50163 -12.45844 -12.38035 -12.18259 -12.12392 -11.90892 -11.72950 -11.44151 -11.41717 -11.17606 -10.92849 -10.25234 -9.98905 -9.88217 -9.13833 -8.45398 -5.93928 0.98277 1.40130 1.41827 1.43410 1.52694 2.07408 2.29263 2.64595 2.82304 2.94256 3.21510 3.45166 3.47903 3.64142 3.74782 3.80850 3.86938 4.07027 4.19726 4.24815 4.33514 4.36269 4.41109 4.49221 4.54270 4.57315 4.68338 4.71115 4.71958 4.81453 4.83982 4.88786 5.01084 5.08055 5.14562 5.19049 5.24042 5.35705 5.42087 5.45217 5.58861 5.92215 6.01319 6.11556 6.31603 6.62464 6.63992 7.14416 7.58379 8.14519 8.71756 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.029590 B = 0.001572 C = 0.001537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.050716 B =17812.847036 C =18209.299716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.541 5.541 3 C 0.054 3.946 4 C -0.101 4.101 5 C -0.079 4.079 6 C -0.126 4.126 7 C 0.109 3.891 8 N -0.588 5.588 9 C 0.465 3.535 10 O -0.557 6.557 11 C 0.260 3.740 12 F -0.194 7.194 13 F -0.186 7.186 14 C 0.096 3.904 15 C -0.127 4.127 16 C 0.057 3.943 17 C 0.440 3.560 18 O -0.614 6.614 19 N -0.576 5.576 20 C -0.333 4.333 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.992 3.008 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.273 1.273 28 H 0.027 0.973 29 H 0.050 0.950 30 H 0.083 0.917 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.186 0.814 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.067 0.933 44 H 0.099 0.901 45 H 0.065 0.935 46 H 0.107 0.893 47 H 0.395 0.605 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.125 26.475 10.916 28.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.265 5.265 3 C -0.073 4.073 4 C -0.139 4.139 5 C -0.098 4.098 6 C -0.164 4.164 7 C -0.013 4.013 8 N -0.320 5.320 9 C 0.249 3.751 10 O -0.436 6.436 11 C 0.204 3.796 12 F -0.175 7.175 13 F -0.168 7.168 14 C -0.025 4.025 15 C -0.165 4.165 16 C -0.074 4.074 17 C 0.228 3.772 18 O -0.501 6.501 19 N -0.213 5.213 20 C -0.462 4.462 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.198 1.198 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.076 0.924 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.202 0.798 41 H 0.124 0.876 42 H 0.112 0.888 43 H 0.086 0.914 44 H 0.118 0.882 45 H 0.083 0.917 46 H 0.125 0.875 47 H 0.229 0.771 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.687 25.919 11.729 28.500 hybrid contribution 0.104 -0.566 -1.261 1.386 sum -1.583 25.354 10.468 27.475 Atomic orbital electron populations 1.22425 0.87057 1.01955 1.00643 1.61551 1.08785 1.14189 1.42008 1.22327 1.00396 0.86388 0.98233 1.21534 1.01269 0.94658 0.96473 1.21150 0.94191 0.95128 0.99347 1.22054 0.96163 0.95034 1.03193 1.21767 0.99271 0.92023 0.88224 1.48278 1.08409 1.48845 1.26518 1.21563 0.87341 0.81422 0.84761 1.90795 1.16033 1.62978 1.73763 1.21930 0.79369 0.86344 0.91955 1.93031 1.62167 1.82299 1.80037 1.93045 1.64977 1.69236 1.89507 1.22270 0.76797 0.98452 1.04994 1.21980 1.02496 0.94022 0.97988 1.21731 1.01923 0.90187 0.93537 1.20836 0.83661 0.88873 0.83835 1.90456 1.45156 1.81478 1.32961 1.41950 1.50139 1.07062 1.22191 1.19618 1.34480 0.84104 1.08026 0.90326 1.26030 0.96297 1.04304 0.94709 1.69663 1.38149 1.37225 1.11163 0.84997 0.78624 0.76809 0.77958 1.19680 1.19542 1.19795 0.95417 0.93146 0.89891 0.93846 0.90302 0.92495 0.91205 0.89567 0.89683 0.92373 0.89308 0.90729 0.79765 0.87641 0.88795 0.91399 0.88249 0.91702 0.87541 0.77084 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 8.96 127.69 1.14 1.96 16 2 N -0.54 -16.48 4.50 -927.05 -4.17 -20.65 16 3 C 0.05 1.08 4.72 86.30 0.41 1.49 16 4 C -0.10 -1.58 4.61 30.60 0.14 -1.44 16 5 C -0.08 -0.78 2.15 -10.66 -0.02 -0.80 16 6 C -0.13 -1.54 5.16 30.78 0.16 -1.38 16 7 C 0.11 1.41 6.42 86.36 0.55 1.97 16 8 N -0.59 -7.10 2.97 -818.91 -2.43 -9.53 16 9 C 0.46 7.80 7.55 87.66 0.66 8.46 16 10 O -0.56 -14.77 16.03 -3.03 -0.05 -14.82 16 11 C 0.26 2.79 4.62 71.24 0.33 3.12 16 12 F -0.19 -3.43 16.95 44.97 0.76 -2.66 16 13 F -0.19 -1.99 15.53 44.97 0.70 -1.30 16 14 C 0.10 0.53 5.90 86.36 0.51 1.04 16 15 C -0.13 -0.81 5.36 30.67 0.16 -0.64 16 16 C 0.06 1.95 5.45 85.55 0.47 2.42 16 17 C 0.44 20.87 7.47 87.66 0.66 21.52 16 18 O -0.61 -33.68 13.91 -3.06 -0.04 -33.73 16 19 N -0.58 -29.54 5.29 -306.98 -1.62 -31.16 16 20 C -0.33 -18.89 9.68 84.04 0.81 -18.07 16 21 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 22 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 23 N -0.92 -49.68 13.05 21.66 0.28 -49.40 16 24 Si 0.99 42.89 29.55 68.60 2.03 44.92 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 28 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.05 1.98 5.82 -2.39 -0.01 1.97 16 30 H 0.08 2.07 6.47 -2.39 -0.02 2.05 16 31 H 0.04 0.77 8.12 -2.39 -0.02 0.75 16 32 H 0.08 1.50 6.32 -2.39 -0.02 1.49 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 1.05 6.55 -2.39 -0.02 1.04 16 35 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.08 1.03 6.52 -2.39 -0.02 1.02 16 37 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 1.31 7.00 -2.39 -0.02 1.29 16 40 H 0.19 0.18 7.91 -2.39 -0.02 0.16 16 41 H 0.11 0.21 5.34 -2.39 -0.01 0.20 16 42 H 0.09 0.37 8.14 -2.38 -0.02 0.35 16 43 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.10 0.38 8.14 -2.38 -0.02 0.36 16 45 H 0.07 1.97 8.12 -2.39 -0.02 1.95 16 46 H 0.11 3.19 7.93 -2.39 -0.02 3.17 16 47 H 0.40 19.26 7.90 -92.70 -0.73 18.53 16 48 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -76.23 387.29 2.16 -74.07 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 0.26 Total: 24.89 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: 6.45 Total: 19.37 kcal Atomic # 7 Polarization: -102.80 SS G_CDS: -7.95 Total: -110.75 kcal Atomic # 8 Polarization: -48.45 SS G_CDS: -0.09 Total: -48.55 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 1.46 Total: -3.96 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -76.23 2.16 -74.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482498793.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.129 kcal (2) G-P(sol) polarization free energy of solvation -76.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds