Wall clock time and date at job start Wed Apr 1 2020 05:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34782 * 119.99712 * 2 1 4 4 O 1.21283 * 120.00143 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.99950 * 0.02562 * 3 2 1 6 6 C 1.53004 * 109.46967 * 180.02562 * 5 3 2 7 7 C 1.50706 * 109.46965 * 179.97438 * 6 5 3 8 8 C 1.38386 * 120.00005 * 124.99984 * 7 6 5 9 9 N 1.32124 * 119.99712 * 180.02562 * 8 7 6 10 10 C 1.32158 * 120.00097 * 359.97438 * 9 8 7 11 11 C 1.38336 * 120.00075 * 0.26620 * 10 9 8 12 12 N 1.32127 * 120.00100 * 305.02162 * 7 6 5 13 13 C 1.46495 * 120.00415 * 179.97438 * 2 1 3 14 14 C 1.53941 * 113.73486 * 36.72949 * 13 2 1 15 15 N 1.47959 * 86.17949 * 221.92182 * 14 13 2 16 16 C 1.46898 * 110.99881 * 137.58043 * 15 14 13 17 17 C 1.50704 * 109.47233 * 70.64025 * 16 15 14 18 18 O 1.21291 * 119.99917 * 359.97438 * 17 16 15 19 19 N 1.34776 * 120.00115 * 180.02562 * 17 16 15 20 20 C 1.37098 * 119.99917 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00254 * 359.97438 * 20 19 17 22 22 C 1.38949 * 119.99767 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99467 * 180.02562 * 22 20 19 24 24 Si 1.86793 * 120.00265 * 0.02562 * 22 20 19 25 25 H 1.48491 * 109.47269 * 90.00019 * 24 22 20 26 26 H 1.48500 * 109.47061 * 210.00433 * 24 22 20 27 27 H 1.48503 * 109.47072 * 329.99997 * 24 22 20 28 28 C 1.47954 * 90.76530 * 24.68775 * 15 14 13 29 29 H 1.09007 * 109.46932 * 90.00508 * 1 2 3 30 30 H 1.09008 * 109.46832 * 209.99722 * 1 2 3 31 31 H 1.08993 * 109.47717 * 329.99778 * 1 2 3 32 32 H 1.09000 * 109.47243 * 59.99934 * 5 3 2 33 33 H 1.08999 * 109.47190 * 299.99966 * 5 3 2 34 34 H 1.09000 * 109.47206 * 59.99895 * 6 5 3 35 35 H 1.08999 * 109.47125 * 299.99990 * 6 5 3 36 36 H 1.08005 * 120.00186 * 0.03930 * 8 7 6 37 37 H 1.08002 * 119.99718 * 179.97438 * 10 9 8 38 38 H 1.07998 * 120.00403 * 179.72028 * 11 10 9 39 39 H 1.09004 * 112.93928 * 168.42979 * 13 2 1 40 40 H 1.09007 * 113.75532 * 336.24022 * 14 13 2 41 41 H 1.09000 * 113.76020 * 107.59888 * 14 13 2 42 42 H 1.09001 * 109.47308 * 190.63360 * 16 15 14 43 43 H 1.08993 * 109.47374 * 310.63966 * 16 15 14 44 44 H 0.96999 * 120.00240 * 359.97438 * 19 17 16 45 45 H 0.97009 * 120.00043 * 179.97438 * 23 22 20 46 46 H 1.09001 * 113.75740 * 220.99480 * 28 15 14 47 47 H 1.08998 * 113.76182 * 89.62554 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1674 -0.0005 5 6 1.3852 2.4723 0.0006 6 6 2.3795 3.6353 -0.0002 7 6 1.6259 4.9404 -0.0002 8 6 1.8756 5.8836 0.9811 9 7 1.2145 7.0276 0.9813 10 6 0.3152 7.2712 0.0441 11 6 0.0620 6.3263 -0.9340 12 7 0.7264 5.1839 -0.9370 13 6 2.1975 -1.2686 0.0006 14 6 1.5293 -2.3704 -0.8417 15 7 1.8710 -3.2879 0.2676 16 6 0.7556 -4.1979 0.5606 17 6 0.6096 -5.1917 -0.5628 18 8 1.3606 -5.1461 -1.5142 19 7 -0.3560 -6.1305 -0.5109 20 6 -0.4890 -7.0343 -1.5332 21 1 0.1796 -6.9937 -2.3803 22 6 -1.4842 -8.0025 -1.4793 23 7 -1.6114 -8.8691 -2.4590 24 14 -2.6412 -8.0723 -0.0145 25 1 -3.8288 -7.2217 -0.2807 26 1 -3.0763 -9.4749 0.2062 27 1 -1.9380 -7.5760 1.1957 28 6 1.8972 -2.1570 1.2213 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 0.7589 2.5298 0.8908 33 1 0.7582 2.5302 -0.8891 34 1 3.0055 3.5776 -0.8906 35 1 3.0068 3.5776 0.8893 36 1 2.6110 5.6848 1.7467 37 1 -0.2255 8.2062 0.0445 38 1 -0.6762 6.5235 -1.6973 39 1 3.2616 -1.1449 -0.2008 40 1 0.4574 -2.2282 -0.9798 41 1 2.0535 -2.5911 -1.7716 42 1 0.9547 -4.7287 1.4916 43 1 -0.1655 -3.6236 0.6596 44 1 -0.9568 -6.1668 0.2498 45 1 -2.3059 -9.5453 -2.4213 46 1 2.7153 -2.2073 1.9397 47 1 0.9329 -1.9525 1.6866 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483886336.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:11 Heat of formation + Delta-G solvation = 28.681651 kcal Electronic energy + Delta-G solvation = -29167.837079 eV Core-core repulsion = 24966.693685 eV Total energy + Delta-G solvation = -4201.143394 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 3.28 seconds Orbital eigenvalues (eV) -41.59705 -40.82809 -39.31567 -37.88836 -35.39438 -35.17175 -33.99842 -33.92672 -31.73570 -31.13508 -30.00615 -27.29882 -26.66454 -26.08387 -25.35738 -24.93777 -23.53931 -22.40735 -20.17011 -19.43583 -19.06832 -18.38479 -18.07109 -17.69881 -17.33012 -16.71969 -16.30807 -16.12483 -15.97342 -15.49360 -15.28913 -14.93800 -14.53730 -14.25868 -14.12076 -13.95427 -13.50216 -13.30292 -13.09043 -13.04986 -12.79751 -12.78348 -12.60040 -12.32595 -12.27303 -12.16980 -12.06583 -11.86730 -11.75231 -11.47746 -11.24145 -11.07226 -10.69713 -10.62805 -10.07796 -10.00226 -9.70572 -9.59965 -9.54214 -8.85854 -8.82818 -8.41241 -8.20884 -6.33752 -3.85347 0.25884 0.63283 2.36630 2.64959 2.99464 3.02932 3.12116 3.19040 3.51283 3.68958 3.77971 3.89796 3.97708 4.07158 4.14736 4.39759 4.42285 4.49926 4.61967 4.64766 4.73050 4.78560 4.86268 4.91703 4.97777 5.08022 5.13408 5.19298 5.21706 5.33074 5.40255 5.48884 5.51325 5.59599 5.61013 5.65742 5.83971 5.87494 5.92153 6.10956 6.26817 6.45463 6.76960 6.99592 7.13498 7.27955 7.54660 7.91316 8.10973 8.56649 8.92158 9.39110 9.79359 10.79329 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021454 B = 0.001688 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.811359 B =16579.993763 C =17174.849267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.606 5.606 3 C 0.516 3.484 4 O -0.538 6.538 5 C -0.131 4.131 6 C -0.052 4.052 7 C 0.085 3.915 8 C 0.053 3.947 9 N -0.437 5.437 10 C 0.040 3.960 11 C 0.056 3.944 12 N -0.436 5.436 13 C 0.114 3.886 14 C 0.012 3.988 15 N -0.448 5.448 16 C 0.011 3.989 17 C 0.451 3.549 18 O -0.559 6.559 19 N -0.591 5.591 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.042 3.958 23 N -0.880 5.880 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.270 1.270 28 C -0.013 4.013 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.170 0.830 37 H 0.169 0.831 38 H 0.171 0.829 39 H 0.130 0.870 40 H 0.072 0.928 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.053 0.947 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.094 0.906 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.235 30.406 9.984 32.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.339 5.339 3 C 0.305 3.695 4 O -0.415 6.415 5 C -0.171 4.171 6 C -0.091 4.091 7 C -0.055 4.055 8 C -0.107 4.107 9 N -0.151 5.151 10 C -0.120 4.120 11 C -0.104 4.104 12 N -0.152 5.152 13 C 0.010 3.990 14 C -0.118 4.118 15 N -0.171 5.171 16 C -0.121 4.121 17 C 0.237 3.763 18 O -0.440 6.440 19 N -0.230 5.230 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.520 5.520 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.195 1.195 28 C -0.143 4.143 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.188 0.812 37 H 0.187 0.813 38 H 0.188 0.812 39 H 0.147 0.853 40 H 0.090 0.910 41 H 0.120 0.880 42 H 0.111 0.889 43 H 0.071 0.929 44 H 0.202 0.798 45 H 0.084 0.916 46 H 0.113 0.887 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.358 29.793 9.180 31.205 hybrid contribution -2.184 0.100 1.224 2.505 sum -0.825 29.893 10.404 31.663 Atomic orbital electron populations 1.21841 0.79470 1.03207 1.02549 1.47926 1.06957 1.05899 1.73136 1.20633 0.88020 0.85285 0.75592 1.90712 1.13879 1.87393 1.49552 1.21610 0.99130 0.91304 1.05078 1.20281 0.96171 0.87145 1.05472 1.22340 0.94169 0.97579 0.91461 1.23696 0.98635 0.89815 0.98514 1.68470 1.04679 1.19300 1.22654 1.23793 0.95663 1.00825 0.91710 1.23824 0.98094 0.89897 0.98620 1.68288 1.04763 1.19818 1.22283 1.23241 0.98919 0.80715 0.96158 1.24286 1.00006 0.89610 0.97875 1.68372 1.36809 1.08633 1.03286 1.22482 0.93380 0.96553 0.99729 1.19564 0.83803 0.84251 0.88701 1.90574 1.44551 1.73840 1.35046 1.42209 1.30125 1.29624 1.21076 1.19429 1.16329 1.07365 1.00247 0.86275 1.25037 0.97667 0.96025 0.97416 1.69624 1.33499 1.17491 1.31427 0.86672 0.81575 0.78767 0.82370 1.19685 1.20130 1.19516 1.24511 1.01956 0.91103 0.96770 0.91829 0.90891 0.90780 0.89007 0.87701 0.88503 0.88829 0.81245 0.81344 0.81204 0.85252 0.91014 0.87972 0.88863 0.92860 0.79761 0.91596 0.88725 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 8.84 59.84 0.53 1.05 16 2 N -0.61 -6.07 3.09 -175.27 -0.54 -6.61 16 3 C 0.52 5.39 7.67 -10.99 -0.08 5.30 16 4 O -0.54 -7.48 15.47 5.55 0.09 -7.39 16 5 C -0.13 -0.93 4.12 -27.88 -0.11 -1.05 16 6 C -0.05 -0.37 4.92 -27.88 -0.14 -0.50 16 7 C 0.08 0.61 6.18 -82.41 -0.51 0.10 16 8 C 0.05 0.36 10.85 -17.37 -0.19 0.17 16 9 N -0.44 -3.37 10.50 -13.06 -0.14 -3.51 16 10 C 0.04 0.22 11.22 -17.38 -0.20 0.03 16 11 C 0.06 0.31 11.22 -17.38 -0.20 0.12 16 12 N -0.44 -3.41 10.05 -9.29 -0.09 -3.50 16 13 C 0.11 1.39 4.39 -69.63 -0.31 1.08 16 14 C 0.01 0.17 6.17 -2.76 -0.02 0.15 16 15 N -0.45 -7.03 5.95 -239.89 -1.43 -8.46 16 16 C 0.01 0.18 5.31 -4.97 -0.03 0.15 16 17 C 0.45 10.11 7.59 -10.98 -0.08 10.03 16 18 O -0.56 -14.87 15.13 5.55 0.08 -14.78 16 19 N -0.59 -13.86 5.09 -10.96 -0.06 -13.92 16 20 C -0.31 -8.55 10.16 -14.93 -0.15 -8.71 16 21 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.54 13.96 55.50 0.77 -24.77 16 24 Si 0.88 19.07 27.74 -169.99 -4.71 14.35 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 27 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 28 C -0.01 -0.16 7.50 -2.77 -0.02 -0.18 16 29 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 30 H 0.07 0.52 6.36 -51.92 -0.33 0.19 16 31 H 0.07 0.37 6.44 -51.93 -0.33 0.03 16 32 H 0.09 0.51 7.40 -51.93 -0.38 0.12 16 33 H 0.10 0.73 7.93 -51.93 -0.41 0.32 16 34 H 0.10 0.80 8.10 -51.93 -0.42 0.38 16 35 H 0.09 0.58 7.85 -51.93 -0.41 0.18 16 36 H 0.17 0.75 7.96 -52.48 -0.42 0.33 16 37 H 0.17 0.42 8.06 -52.49 -0.42 -0.01 16 38 H 0.17 0.44 8.06 -52.49 -0.42 0.02 16 39 H 0.13 1.80 7.24 -51.93 -0.38 1.42 16 40 H 0.07 0.98 6.35 -51.93 -0.33 0.65 16 41 H 0.10 1.73 8.09 -51.93 -0.42 1.31 16 42 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.05 0.72 7.69 -51.93 -0.40 0.32 16 44 H 0.37 7.57 5.76 -40.82 -0.24 7.34 16 45 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.07 0.69 6.62 -51.93 -0.34 0.35 16 LS Contribution 389.36 15.07 5.87 5.87 Total: -1.00 -36.62 389.36 -8.23 -44.85 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -6.48 Total: 9.07 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: -1.60 Total: 8.79 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: -1.48 Total: -60.76 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: 0.17 Total: -22.18 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.71 Total: 14.35 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.62 -8.23 -44.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483886336.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.535 kcal (2) G-P(sol) polarization free energy of solvation -36.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.28 seconds