Wall clock time and date at job start Wed Apr 1 2020 05:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34782 * 119.99712 * 2 1 4 4 O 1.21283 * 120.00143 * 180.02562 * 3 2 1 5 5 C 1.50696 * 119.99950 * 0.02562 * 3 2 1 6 6 C 1.53004 * 109.46967 * 180.02562 * 5 3 2 7 7 C 1.50706 * 109.46965 * 179.97438 * 6 5 3 8 8 C 1.38386 * 120.00005 * 124.99984 * 7 6 5 9 9 N 1.32124 * 119.99712 * 180.02562 * 8 7 6 10 10 C 1.32158 * 120.00097 * 359.97438 * 9 8 7 11 11 C 1.38336 * 120.00075 * 0.26620 * 10 9 8 12 12 N 1.32127 * 120.00100 * 305.02162 * 7 6 5 13 13 C 1.46495 * 120.00415 * 179.97438 * 2 1 3 14 14 C 1.53941 * 113.73486 * 36.72949 * 13 2 1 15 15 N 1.47959 * 86.17949 * 221.92182 * 14 13 2 16 16 C 1.46898 * 110.99881 * 137.58043 * 15 14 13 17 17 C 1.50704 * 109.47233 * 70.64025 * 16 15 14 18 18 O 1.21291 * 119.99917 * 359.97438 * 17 16 15 19 19 N 1.34776 * 120.00115 * 180.02562 * 17 16 15 20 20 C 1.37098 * 119.99917 * 179.97438 * 19 17 16 21 21 H 1.08003 * 120.00254 * 359.97438 * 20 19 17 22 22 C 1.38949 * 119.99767 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99467 * 180.02562 * 22 20 19 24 24 Si 1.86793 * 120.00265 * 0.02562 * 22 20 19 25 25 H 1.48491 * 109.47269 * 90.00019 * 24 22 20 26 26 H 1.48500 * 109.47061 * 210.00433 * 24 22 20 27 27 H 1.48503 * 109.47072 * 329.99997 * 24 22 20 28 28 C 1.47954 * 90.76530 * 24.68775 * 15 14 13 29 29 H 1.09007 * 109.46932 * 90.00508 * 1 2 3 30 30 H 1.09008 * 109.46832 * 209.99722 * 1 2 3 31 31 H 1.08993 * 109.47717 * 329.99778 * 1 2 3 32 32 H 1.09000 * 109.47243 * 59.99934 * 5 3 2 33 33 H 1.08999 * 109.47190 * 299.99966 * 5 3 2 34 34 H 1.09000 * 109.47206 * 59.99895 * 6 5 3 35 35 H 1.08999 * 109.47125 * 299.99990 * 6 5 3 36 36 H 1.08005 * 120.00186 * 0.03930 * 8 7 6 37 37 H 1.08002 * 119.99718 * 179.97438 * 10 9 8 38 38 H 1.07998 * 120.00403 * 179.72028 * 11 10 9 39 39 H 1.09004 * 112.93928 * 168.42979 * 13 2 1 40 40 H 1.09007 * 113.75532 * 336.24022 * 14 13 2 41 41 H 1.09000 * 113.76020 * 107.59888 * 14 13 2 42 42 H 1.09001 * 109.47308 * 190.63360 * 16 15 14 43 43 H 1.08993 * 109.47374 * 310.63966 * 16 15 14 44 44 H 0.96999 * 120.00240 * 359.97438 * 19 17 16 45 45 H 0.97009 * 120.00043 * 179.97438 * 23 22 20 46 46 H 1.09001 * 113.75740 * 220.99480 * 28 15 14 47 47 H 1.08998 * 113.76182 * 89.62554 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1674 -0.0005 5 6 1.3852 2.4723 0.0006 6 6 2.3795 3.6353 -0.0002 7 6 1.6259 4.9404 -0.0002 8 6 1.8756 5.8836 0.9811 9 7 1.2145 7.0276 0.9813 10 6 0.3152 7.2712 0.0441 11 6 0.0620 6.3263 -0.9340 12 7 0.7264 5.1839 -0.9370 13 6 2.1975 -1.2686 0.0006 14 6 1.5293 -2.3704 -0.8417 15 7 1.8710 -3.2879 0.2676 16 6 0.7556 -4.1979 0.5606 17 6 0.6096 -5.1917 -0.5628 18 8 1.3606 -5.1461 -1.5142 19 7 -0.3560 -6.1305 -0.5109 20 6 -0.4890 -7.0343 -1.5332 21 1 0.1796 -6.9937 -2.3803 22 6 -1.4842 -8.0025 -1.4793 23 7 -1.6114 -8.8691 -2.4590 24 14 -2.6412 -8.0723 -0.0145 25 1 -3.8288 -7.2217 -0.2807 26 1 -3.0763 -9.4749 0.2062 27 1 -1.9380 -7.5760 1.1957 28 6 1.8972 -2.1570 1.2213 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 0.7589 2.5298 0.8908 33 1 0.7582 2.5302 -0.8891 34 1 3.0055 3.5776 -0.8906 35 1 3.0068 3.5776 0.8893 36 1 2.6110 5.6848 1.7467 37 1 -0.2255 8.2062 0.0445 38 1 -0.6762 6.5235 -1.6973 39 1 3.2616 -1.1449 -0.2008 40 1 0.4574 -2.2282 -0.9798 41 1 2.0535 -2.5911 -1.7716 42 1 0.9547 -4.7287 1.4916 43 1 -0.1655 -3.6236 0.6596 44 1 -0.9568 -6.1668 0.2498 45 1 -2.3059 -9.5453 -2.4213 46 1 2.7153 -2.2073 1.9397 47 1 0.9329 -1.9525 1.6866 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483886336.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:04 Heat of formation + Delta-G solvation = -2.257360 kcal Electronic energy + Delta-G solvation = -29169.178695 eV Core-core repulsion = 24966.693685 eV Total energy + Delta-G solvation = -4202.485010 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.08362 -41.80447 -40.47455 -39.47089 -36.18134 -35.91674 -35.84358 -34.46392 -33.77252 -31.92373 -31.00059 -28.08461 -27.62935 -27.08587 -26.63832 -25.49740 -24.75069 -23.10194 -21.35314 -21.01474 -20.29565 -19.86344 -18.58474 -18.44020 -17.84431 -17.79271 -17.57787 -17.07304 -16.72662 -16.66142 -16.42240 -15.97279 -15.68159 -15.47634 -15.15053 -14.94295 -14.57426 -14.44820 -14.31580 -13.99685 -13.85158 -13.69949 -13.57113 -13.35973 -13.25298 -13.21981 -12.91232 -12.85458 -12.56082 -12.41978 -12.32659 -12.15672 -11.98909 -11.97791 -11.80240 -11.50616 -10.91253 -10.43489 -10.25463 -10.15989 -10.00317 -9.77221 -9.69115 -8.41372 -6.02765 -0.16830 0.16871 1.30396 1.35718 1.45241 1.56593 1.85975 1.94684 2.23321 2.68137 2.74992 3.06644 3.11823 3.14949 3.38950 3.43545 3.51992 3.60632 3.73618 3.93676 4.04253 4.07970 4.12282 4.13977 4.20921 4.33423 4.36765 4.41364 4.45784 4.48662 4.57112 4.62087 4.67572 4.72748 4.80038 4.92940 4.97183 5.01390 5.06869 5.30940 5.41980 5.47045 5.53402 5.87948 5.98323 6.33414 6.35473 6.58868 6.84036 6.87778 7.11868 7.38764 7.96263 8.76338 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021454 B = 0.001688 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.811359 B =16579.993763 C =17174.849267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.604 5.604 3 C 0.513 3.487 4 O -0.580 6.580 5 C -0.118 4.118 6 C -0.047 4.047 7 C 0.077 3.923 8 C 0.046 3.954 9 N -0.463 5.463 10 C 0.041 3.959 11 C 0.053 3.947 12 N -0.459 5.459 13 C 0.123 3.877 14 C 0.010 3.990 15 N -0.483 5.483 16 C 0.023 3.977 17 C 0.449 3.551 18 O -0.611 6.611 19 N -0.590 5.590 20 C -0.329 4.329 21 H 0.052 0.948 22 C -0.016 4.016 23 N -0.935 5.935 24 Si 0.967 3.033 25 H -0.254 1.254 26 H -0.277 1.277 27 H -0.230 1.230 28 C 0.005 3.995 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.186 0.814 37 H 0.198 0.802 38 H 0.199 0.801 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.062 0.938 42 H 0.121 0.879 43 H 0.095 0.905 44 H 0.390 0.610 45 H 0.279 0.721 46 H 0.102 0.898 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.103 32.695 13.759 35.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.336 5.336 3 C 0.303 3.697 4 O -0.460 6.460 5 C -0.158 4.158 6 C -0.086 4.086 7 C -0.063 4.063 8 C -0.113 4.113 9 N -0.178 5.178 10 C -0.119 4.119 11 C -0.107 4.107 12 N -0.175 5.175 13 C 0.018 3.982 14 C -0.119 4.119 15 N -0.206 5.206 16 C -0.108 4.108 17 C 0.237 3.763 18 O -0.495 6.495 19 N -0.232 5.232 20 C -0.458 4.458 21 H 0.070 0.930 22 C -0.214 4.214 23 N -0.576 5.576 24 Si 0.786 3.214 25 H -0.178 1.178 26 H -0.202 1.202 27 H -0.153 1.153 28 C -0.124 4.124 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.121 0.879 32 H 0.135 0.865 33 H 0.127 0.873 34 H 0.096 0.904 35 H 0.117 0.883 36 H 0.203 0.797 37 H 0.215 0.785 38 H 0.216 0.784 39 H 0.123 0.877 40 H 0.102 0.898 41 H 0.080 0.920 42 H 0.139 0.861 43 H 0.113 0.887 44 H 0.226 0.774 45 H 0.088 0.912 46 H 0.121 0.879 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.516 32.103 12.981 34.661 hybrid contribution -1.209 -0.541 -0.119 1.330 sum -2.725 31.562 12.862 34.191 Atomic orbital electron populations 1.22100 0.77291 1.05065 1.03211 1.47978 1.08204 1.04855 1.72589 1.21231 0.87683 0.86279 0.74519 1.90697 1.15870 1.87987 1.51475 1.21560 0.98812 0.89071 1.06326 1.20195 0.96090 0.87443 1.04893 1.22266 0.94549 0.97625 0.91854 1.23944 0.98888 0.89578 0.98855 1.68508 1.05675 1.19761 1.23811 1.24314 0.94911 1.01795 0.90861 1.24318 0.98061 0.89137 0.99143 1.68273 1.05431 1.21111 1.22719 1.22844 0.97698 0.81572 0.96074 1.24201 1.00375 0.90784 0.96584 1.68332 1.37208 1.10233 1.04866 1.22447 0.95588 0.95526 0.97253 1.20872 0.81910 0.84123 0.89423 1.90561 1.46178 1.75046 1.37714 1.42013 1.31212 1.29250 1.20687 1.18984 1.16465 1.09949 1.00442 0.92960 1.26149 0.99322 0.94485 1.01483 1.69815 1.34756 1.18503 1.34484 0.85341 0.78689 0.79093 0.78234 1.17847 1.20212 1.15348 1.24511 1.03869 0.88203 0.95801 0.91844 0.90052 0.87891 0.86532 0.87298 0.90386 0.88253 0.79698 0.78473 0.78427 0.87724 0.89805 0.91956 0.86109 0.88738 0.77413 0.91155 0.87927 0.87987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.72 8.84 127.77 1.13 1.85 16 2 N -0.60 -11.03 3.09 -826.83 -2.56 -13.59 16 3 C 0.51 10.19 7.67 87.65 0.67 10.86 16 4 O -0.58 -16.35 15.47 -3.04 -0.05 -16.40 16 5 C -0.12 -1.46 4.12 29.85 0.12 -1.34 16 6 C -0.05 -0.64 4.92 29.85 0.15 -0.49 16 7 C 0.08 1.02 6.18 42.55 0.26 1.28 16 8 C 0.05 0.58 10.85 84.68 0.92 1.49 16 9 N -0.46 -6.43 10.50 -195.22 -2.05 -8.48 16 10 C 0.04 0.37 11.22 84.67 0.95 1.32 16 11 C 0.05 0.49 11.22 84.67 0.95 1.44 16 12 N -0.46 -6.49 10.05 -183.29 -1.84 -8.33 16 13 C 0.12 2.93 4.39 46.56 0.20 3.13 16 14 C 0.01 0.30 6.17 86.41 0.53 0.83 16 15 N -0.48 -14.45 5.95 -912.88 -5.43 -19.88 16 16 C 0.02 0.68 5.31 85.56 0.45 1.14 16 17 C 0.45 20.03 7.59 87.66 0.67 20.69 16 18 O -0.61 -34.08 15.13 -3.06 -0.05 -34.12 16 19 N -0.59 -27.29 5.09 -306.98 -1.56 -28.85 16 20 C -0.33 -19.19 10.16 84.04 0.85 -18.34 16 21 H 0.05 3.67 7.39 -2.91 -0.02 3.64 16 22 C -0.02 -0.87 5.50 84.93 0.47 -0.41 16 23 N -0.93 -56.19 13.96 21.66 0.30 -55.89 16 24 Si 0.97 37.86 27.74 68.60 1.90 39.76 16 25 H -0.25 -9.29 7.11 99.48 0.71 -8.58 16 26 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 27 H -0.23 -7.50 6.52 99.48 0.65 -6.85 16 28 C 0.01 0.11 7.50 86.41 0.65 0.75 16 29 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.08 0.79 6.36 -2.38 -0.02 0.77 16 31 H 0.10 0.56 6.44 -2.39 -0.02 0.55 16 32 H 0.12 0.89 7.40 -2.39 -0.02 0.87 16 33 H 0.11 1.31 7.93 -2.39 -0.02 1.29 16 34 H 0.08 1.33 8.10 -2.39 -0.02 1.31 16 35 H 0.10 1.18 7.85 -2.39 -0.02 1.16 16 36 H 0.19 1.44 7.96 -2.91 -0.02 1.41 16 37 H 0.20 0.40 8.06 -2.91 -0.02 0.37 16 38 H 0.20 0.47 8.06 -2.91 -0.02 0.44 16 39 H 0.10 3.03 7.24 -2.38 -0.02 3.01 16 40 H 0.08 2.19 6.35 -2.38 -0.02 2.18 16 41 H 0.06 2.29 8.09 -2.39 -0.02 2.27 16 42 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 43 H 0.09 2.03 7.69 -2.39 -0.02 2.01 16 44 H 0.39 14.67 5.76 -92.71 -0.53 14.13 16 45 H 0.28 15.30 8.31 -92.70 -0.77 14.53 16 46 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.10 1.45 6.62 -2.39 -0.02 1.44 16 Total: -1.00 -88.25 389.36 -1.93 -90.18 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: 0.42 Total: 31.39 kcal Atomic # 6 Polarization: 15.24 SS G_CDS: 8.98 Total: 24.22 kcal Atomic # 7 Polarization: -121.88 SS G_CDS: -13.14 Total: -135.02 kcal Atomic # 8 Polarization: -50.43 SS G_CDS: -0.09 Total: -50.52 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 1.90 Total: 39.76 kcal Total: -88.25 -1.93 -90.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483886336.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.921 kcal (2) G-P(sol) polarization free energy of solvation -88.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds