Wall clock time and date at job start Wed Apr 1 2020 06:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46897 * 110.99957 * 2 1 4 4 C 1.52996 * 109.46997 * 66.05038 * 3 2 1 5 5 C 1.53000 * 109.47210 * 179.97438 * 4 3 2 6 6 N 1.46506 * 109.46992 * 179.97438 * 5 4 3 7 7 C 1.46499 * 119.99936 * 90.00137 * 6 5 4 8 8 C 1.34773 * 119.99969 * 269.72101 * 6 5 4 9 9 O 1.21281 * 120.00220 * 0.02562 * 8 6 5 10 10 C 1.50706 * 120.00080 * 180.02562 * 8 6 5 11 11 H 1.09001 * 115.54412 * 325.58966 * 10 8 6 12 12 C 1.52992 * 117.49803 * 111.25223 * 10 8 6 13 13 C 1.52990 * 117.50125 * 179.91741 * 10 8 6 14 14 H 1.09002 * 117.49888 * 359.97438 * 13 10 8 15 15 C 1.52999 * 117.50039 * 145.01972 * 13 10 8 16 16 F 1.39902 * 109.47049 * 179.97438 * 15 13 10 17 17 F 1.39897 * 109.47191 * 299.99707 * 15 13 10 18 18 C 1.46901 * 110.99917 * 236.04942 * 2 1 3 19 19 C 1.50703 * 109.47134 * 293.95281 * 18 2 1 20 20 O 1.21293 * 120.00031 * 0.02562 * 19 18 2 21 21 N 1.34781 * 120.00136 * 179.97438 * 19 18 2 22 22 C 1.37100 * 119.99900 * 180.02562 * 21 19 18 23 23 H 1.07996 * 119.99792 * 0.02562 * 22 21 19 24 24 C 1.38950 * 119.99652 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99884 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99781 * 180.02562 * 24 22 21 27 27 H 1.48491 * 109.47374 * 59.99915 * 26 24 22 28 28 H 1.48498 * 109.47111 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47016 * 299.99922 * 26 24 22 30 30 H 1.09001 * 109.46838 * 60.00005 * 1 2 3 31 31 H 1.09003 * 109.47108 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47109 * 299.99723 * 1 2 3 33 33 H 1.08997 * 109.47661 * 306.04889 * 3 2 1 34 34 H 1.09000 * 109.46973 * 186.04524 * 3 2 1 35 35 H 1.09000 * 109.47531 * 59.99474 * 4 3 2 36 36 H 1.09008 * 109.47250 * 300.00049 * 4 3 2 37 37 H 1.09000 * 109.46884 * 60.00289 * 5 4 3 38 38 H 1.09000 * 109.46955 * 299.99604 * 5 4 3 39 39 H 1.09003 * 109.47269 * 89.99349 * 7 6 5 40 40 H 1.08994 * 109.47173 * 210.00167 * 7 6 5 41 41 H 1.09005 * 109.47077 * 330.00338 * 7 6 5 42 42 H 1.09000 * 117.49924 * 214.98147 * 12 10 8 43 43 H 1.08996 * 117.50121 * 0.02562 * 12 10 8 44 44 H 1.09006 * 109.47061 * 60.00221 * 15 13 10 45 45 H 1.09001 * 109.47204 * 53.95205 * 18 2 1 46 46 H 1.08997 * 109.47614 * 173.95461 * 18 2 1 47 47 H 0.97000 * 119.99868 * 359.97438 * 21 19 18 48 48 H 0.97009 * 119.99409 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0573 1.3183 5 6 2.1804 3.4855 1.3186 6 7 1.8313 4.1425 2.5807 7 6 2.7389 4.0551 3.7274 8 6 0.6781 4.8320 2.6851 9 8 -0.0711 4.9083 1.7344 10 6 0.3193 5.5083 3.9832 11 1 0.6371 4.9889 4.8873 12 6 0.3255 7.0380 4.0080 13 6 -1.0023 6.2770 4.0376 14 1 -1.6122 6.2940 3.1343 15 6 -1.7767 6.2585 5.3570 16 9 -2.9495 7.0088 5.2201 17 9 -2.1028 4.9389 5.6878 18 6 1.9955 -0.7659 -1.1376 19 6 1.6369 -2.2204 -0.9730 20 8 1.0047 -2.5832 -0.0035 21 7 2.0180 -3.1180 -1.9035 22 6 1.6914 -4.4410 -1.7539 23 1 1.1284 -4.7640 -0.8907 24 6 2.0838 -5.3662 -2.7134 25 7 2.7675 -4.9729 -3.7645 26 14 1.6382 -7.1688 -2.5100 27 1 0.1610 -7.3107 -2.4578 28 1 2.1700 -7.9430 -3.6602 29 1 2.2299 -7.6859 -1.2499 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.5611 1.9274 -0.8308 34 1 3.0797 1.3444 -0.1082 35 1 2.0658 1.5014 2.1492 36 1 0.5472 2.0843 1.4266 37 1 1.7463 4.0417 0.4877 38 1 3.2646 3.4581 1.2106 39 1 3.4415 4.8879 3.6990 40 1 2.1621 4.0976 4.6513 41 1 3.2883 3.1146 3.6851 42 1 0.6469 7.5251 4.9287 43 1 0.5887 7.5553 3.0855 44 1 -1.1603 6.6893 6.1462 45 1 1.5611 -0.3872 -2.0628 46 1 3.0797 -0.6611 -1.1758 47 1 2.5227 -2.8277 -2.6793 48 1 3.0411 -5.6188 -4.4345 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484740323.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:03 Heat of formation + Delta-G solvation = -138.467124 kcal Electronic energy + Delta-G solvation = -29868.106863 eV Core-core repulsion = 25209.026168 eV Total energy + Delta-G solvation = -4659.080695 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.34408 -47.37639 -40.61283 -38.64224 -37.60307 -36.65933 -35.83312 -33.86130 -32.17521 -31.19725 -28.23944 -27.79468 -27.38705 -26.42424 -25.07330 -24.06133 -22.61167 -21.88218 -20.71769 -19.52866 -19.09356 -18.30793 -17.80244 -17.63985 -17.47842 -16.74089 -16.50868 -15.93770 -15.80439 -15.39935 -15.02945 -14.65884 -14.47243 -14.28750 -14.20222 -13.99684 -13.74038 -13.64259 -13.43459 -13.38235 -13.25572 -13.21528 -12.79076 -12.64391 -12.21801 -12.01634 -11.97641 -11.58301 -11.53117 -11.44212 -11.28044 -11.20663 -11.14606 -11.13237 -10.86657 -10.54459 -10.41888 -10.19469 -10.16913 -9.43761 -9.04302 -8.39990 -7.94239 -7.79494 -6.38766 -3.79399 1.99525 2.47694 2.95346 3.22162 3.23535 3.27446 3.32069 3.63742 3.84759 3.91584 3.94508 4.04655 4.20355 4.28453 4.34284 4.50688 4.66741 4.74138 4.79937 4.92789 4.95015 5.08998 5.14867 5.19629 5.22303 5.27776 5.31604 5.33534 5.44579 5.52998 5.65480 5.76818 5.81234 5.97571 6.03580 6.05536 6.15244 6.27685 6.33600 6.65178 6.96046 7.34397 7.46044 7.57882 7.78629 8.09679 8.65577 9.21290 9.58020 10.10392 10.78975 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.021099 B = 0.001587 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.746883 B =17636.611251 C =18353.721651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.519 5.519 3 C 0.058 3.942 4 C -0.130 4.130 5 C 0.116 3.884 6 N -0.609 5.609 7 C 0.076 3.924 8 C 0.543 3.457 9 O -0.532 6.532 10 C -0.169 4.169 11 H 0.134 0.866 12 C -0.126 4.126 13 C -0.193 4.193 14 H 0.141 0.859 15 C 0.297 3.703 16 F -0.199 7.199 17 F -0.200 7.200 18 C 0.046 3.954 19 C 0.444 3.556 20 O -0.577 6.577 21 N -0.565 5.565 22 C -0.298 4.298 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.903 5.903 26 Si 0.931 3.069 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.013 0.987 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.031 0.969 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.114 0.886 43 H 0.112 0.888 44 H 0.113 0.887 45 H 0.047 0.953 46 H 0.087 0.913 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.199 27.650 16.098 32.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.243 5.243 3 C -0.071 4.071 4 C -0.169 4.169 5 C -0.006 4.006 6 N -0.342 5.342 7 C -0.067 4.067 8 C 0.330 3.670 9 O -0.408 6.408 10 C -0.190 4.190 11 H 0.152 0.848 12 C -0.164 4.164 13 C -0.212 4.212 14 H 0.159 0.841 15 C 0.243 3.757 16 F -0.181 7.181 17 F -0.181 7.181 18 C -0.086 4.086 19 C 0.230 3.770 20 O -0.461 6.461 21 N -0.202 5.202 22 C -0.428 4.428 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.032 0.968 31 H 0.113 0.887 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.065 0.935 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.585 27.064 16.507 31.706 hybrid contribution -0.130 -0.530 -1.153 1.276 sum 0.455 26.534 15.354 30.659 Atomic orbital electron populations 1.22555 0.86783 1.04254 0.99017 1.61564 1.08757 1.11324 1.42605 1.22024 0.99973 0.88992 0.96094 1.21919 1.02218 0.94090 0.98661 1.21521 1.00285 0.93302 0.85522 1.47728 1.20490 1.51942 1.14013 1.21884 0.93784 1.02826 0.88230 1.19446 0.80904 0.78376 0.88274 1.90737 1.49519 1.61081 1.39497 1.22285 1.01482 0.96119 0.99125 0.84823 1.23132 0.96874 0.91117 1.05240 1.23389 0.91540 1.06222 1.00034 0.84136 1.21276 0.82808 0.75060 0.96543 1.93009 1.51788 1.76233 1.97025 1.93031 1.93730 1.37762 1.93561 1.21863 1.00578 0.94152 0.91969 1.19759 0.85367 0.86676 0.85205 1.90482 1.43815 1.80155 1.31681 1.41865 1.49559 1.07350 1.21435 1.19650 1.32923 0.82340 1.07895 0.87992 1.25253 0.96871 1.00541 0.95315 1.69610 1.38161 1.35809 1.10841 0.85917 0.78891 0.81736 0.77663 1.19948 1.21010 1.19923 0.96809 0.88712 0.92130 0.95047 0.90894 0.90811 0.91288 0.89815 0.90152 0.92262 0.90926 0.90365 0.86785 0.86933 0.86963 0.93524 0.89461 0.77508 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 8.96 60.07 0.54 0.92 16 2 N -0.52 -9.04 4.50 -244.37 -1.10 -10.14 16 3 C 0.06 0.76 4.96 -3.83 -0.02 0.74 16 4 C -0.13 -1.52 5.46 -26.73 -0.15 -1.67 16 5 C 0.12 1.08 5.41 -4.04 -0.02 1.05 16 6 N -0.61 -5.11 2.87 -181.57 -0.52 -5.63 16 7 C 0.08 0.36 10.26 59.85 0.61 0.97 16 8 C 0.54 5.46 7.46 -10.98 -0.08 5.37 16 9 O -0.53 -7.54 15.83 5.56 0.09 -7.46 16 10 C -0.17 -1.08 4.96 -91.78 -0.46 -1.53 16 11 H 0.13 0.57 6.45 -51.93 -0.33 0.23 16 12 C -0.13 -0.51 9.88 -26.70 -0.26 -0.78 16 13 C -0.19 -1.31 5.41 -90.59 -0.49 -1.80 16 14 H 0.14 1.28 7.67 -51.93 -0.40 0.88 16 15 C 0.30 1.85 5.50 37.16 0.20 2.06 16 16 F -0.20 -1.69 17.34 2.25 0.04 -1.65 16 17 F -0.20 -1.83 17.29 2.25 0.04 -1.79 16 18 C 0.05 0.85 5.45 -4.97 -0.03 0.82 16 19 C 0.44 10.73 7.48 -10.98 -0.08 10.65 16 20 O -0.58 -15.86 13.91 5.55 0.08 -15.79 16 21 N -0.57 -14.56 5.29 -10.96 -0.06 -14.61 16 22 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 23 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.77 13.05 55.50 0.72 -24.05 16 26 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 29 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 30 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 2.00 5.82 -51.93 -0.30 1.70 16 32 H 0.06 0.99 6.47 -51.93 -0.34 0.65 16 33 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 34 H 0.07 0.84 7.93 -51.93 -0.41 0.43 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.96 6.55 -51.92 -0.34 0.62 16 37 H 0.08 0.89 7.41 -51.93 -0.38 0.50 16 38 H 0.08 0.57 8.07 -51.93 -0.42 0.15 16 39 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.07 0.24 6.00 -51.93 -0.31 -0.07 16 41 H 0.08 0.36 8.07 -51.93 -0.42 -0.06 16 42 H 0.11 0.13 8.05 -51.93 -0.42 -0.29 16 43 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.11 0.26 7.90 -51.93 -0.41 -0.15 16 45 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 46 H 0.09 1.43 7.93 -51.93 -0.41 1.02 16 47 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 48 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 LS Contribution 403.83 15.07 6.09 6.09 Total: -1.00 -35.47 403.83 -7.39 -42.86 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -7.27 Total: 7.17 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -0.47 Total: 8.73 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: -0.96 Total: -54.43 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: 0.17 Total: -23.24 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.08 Total: -3.44 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.47 -7.39 -42.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484740323.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.609 kcal (2) G-P(sol) polarization free energy of solvation -35.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds