Wall clock time and date at job start Wed Apr 1 2020 06:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46897 * 110.99957 * 2 1 4 4 C 1.52996 * 109.46997 * 66.05038 * 3 2 1 5 5 C 1.53000 * 109.47210 * 179.97438 * 4 3 2 6 6 N 1.46506 * 109.46992 * 179.97438 * 5 4 3 7 7 C 1.46499 * 119.99936 * 90.00137 * 6 5 4 8 8 C 1.34773 * 119.99969 * 269.72101 * 6 5 4 9 9 O 1.21281 * 120.00220 * 0.02562 * 8 6 5 10 10 C 1.50706 * 120.00080 * 180.02562 * 8 6 5 11 11 H 1.09001 * 115.54412 * 325.58966 * 10 8 6 12 12 C 1.52992 * 117.49803 * 111.25223 * 10 8 6 13 13 C 1.52990 * 117.50125 * 179.91741 * 10 8 6 14 14 H 1.09002 * 117.49888 * 359.97438 * 13 10 8 15 15 C 1.52999 * 117.50039 * 145.01972 * 13 10 8 16 16 F 1.39902 * 109.47049 * 179.97438 * 15 13 10 17 17 F 1.39897 * 109.47191 * 299.99707 * 15 13 10 18 18 C 1.46901 * 110.99917 * 236.04942 * 2 1 3 19 19 C 1.50703 * 109.47134 * 293.95281 * 18 2 1 20 20 O 1.21293 * 120.00031 * 0.02562 * 19 18 2 21 21 N 1.34781 * 120.00136 * 179.97438 * 19 18 2 22 22 C 1.37100 * 119.99900 * 180.02562 * 21 19 18 23 23 H 1.07996 * 119.99792 * 0.02562 * 22 21 19 24 24 C 1.38950 * 119.99652 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99884 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99781 * 180.02562 * 24 22 21 27 27 H 1.48491 * 109.47374 * 59.99915 * 26 24 22 28 28 H 1.48498 * 109.47111 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47016 * 299.99922 * 26 24 22 30 30 H 1.09001 * 109.46838 * 60.00005 * 1 2 3 31 31 H 1.09003 * 109.47108 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47109 * 299.99723 * 1 2 3 33 33 H 1.08997 * 109.47661 * 306.04889 * 3 2 1 34 34 H 1.09000 * 109.46973 * 186.04524 * 3 2 1 35 35 H 1.09000 * 109.47531 * 59.99474 * 4 3 2 36 36 H 1.09008 * 109.47250 * 300.00049 * 4 3 2 37 37 H 1.09000 * 109.46884 * 60.00289 * 5 4 3 38 38 H 1.09000 * 109.46955 * 299.99604 * 5 4 3 39 39 H 1.09003 * 109.47269 * 89.99349 * 7 6 5 40 40 H 1.08994 * 109.47173 * 210.00167 * 7 6 5 41 41 H 1.09005 * 109.47077 * 330.00338 * 7 6 5 42 42 H 1.09000 * 117.49924 * 214.98147 * 12 10 8 43 43 H 1.08996 * 117.50121 * 0.02562 * 12 10 8 44 44 H 1.09006 * 109.47061 * 60.00221 * 15 13 10 45 45 H 1.09001 * 109.47204 * 53.95205 * 18 2 1 46 46 H 1.08997 * 109.47614 * 173.95461 * 18 2 1 47 47 H 0.97000 * 119.99868 * 359.97438 * 21 19 18 48 48 H 0.97009 * 119.99409 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0573 1.3183 5 6 2.1804 3.4855 1.3186 6 7 1.8313 4.1425 2.5807 7 6 2.7389 4.0551 3.7274 8 6 0.6781 4.8320 2.6851 9 8 -0.0711 4.9083 1.7344 10 6 0.3193 5.5083 3.9832 11 1 0.6371 4.9889 4.8873 12 6 0.3255 7.0380 4.0080 13 6 -1.0023 6.2770 4.0376 14 1 -1.6122 6.2940 3.1343 15 6 -1.7767 6.2585 5.3570 16 9 -2.9495 7.0088 5.2201 17 9 -2.1028 4.9389 5.6878 18 6 1.9955 -0.7659 -1.1376 19 6 1.6369 -2.2204 -0.9730 20 8 1.0047 -2.5832 -0.0035 21 7 2.0180 -3.1180 -1.9035 22 6 1.6914 -4.4410 -1.7539 23 1 1.1284 -4.7640 -0.8907 24 6 2.0838 -5.3662 -2.7134 25 7 2.7675 -4.9729 -3.7645 26 14 1.6382 -7.1688 -2.5100 27 1 0.1610 -7.3107 -2.4578 28 1 2.1700 -7.9430 -3.6602 29 1 2.2299 -7.6859 -1.2499 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.5611 1.9274 -0.8308 34 1 3.0797 1.3444 -0.1082 35 1 2.0658 1.5014 2.1492 36 1 0.5472 2.0843 1.4266 37 1 1.7463 4.0417 0.4877 38 1 3.2646 3.4581 1.2106 39 1 3.4415 4.8879 3.6990 40 1 2.1621 4.0976 4.6513 41 1 3.2883 3.1146 3.6851 42 1 0.6469 7.5251 4.9287 43 1 0.5887 7.5553 3.0855 44 1 -1.1603 6.6893 6.1462 45 1 1.5611 -0.3872 -2.0628 46 1 3.0797 -0.6611 -1.1758 47 1 2.5227 -2.8277 -2.6793 48 1 3.0411 -5.6188 -4.4345 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484740323.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:01 Heat of formation + Delta-G solvation = -163.678983 kcal Electronic energy + Delta-G solvation = -29869.200131 eV Core-core repulsion = 25209.026168 eV Total energy + Delta-G solvation = -4660.173963 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.90259 -47.96086 -41.29145 -40.39226 -38.48317 -37.72760 -36.70932 -35.87982 -33.34374 -33.10310 -29.53278 -28.63881 -28.09828 -27.25619 -26.67140 -25.16404 -23.46902 -22.43493 -21.82785 -20.99171 -20.12833 -19.84792 -18.87333 -18.16752 -18.06967 -17.85881 -17.28099 -17.09183 -16.74626 -16.59578 -16.52887 -16.18131 -15.83783 -15.36931 -15.24451 -14.93151 -14.87542 -14.62707 -14.42779 -14.33920 -13.97590 -13.90307 -13.77787 -13.49070 -13.22559 -13.16707 -13.12596 -13.02256 -12.84562 -12.66377 -12.55041 -12.41959 -12.31202 -12.12113 -12.02052 -11.70187 -11.65174 -11.51432 -11.45658 -10.93550 -10.29929 -10.00268 -9.71010 -9.24681 -8.46258 -5.94945 1.34297 1.39493 1.41114 1.52149 1.88433 2.05407 2.28538 2.48391 2.72786 2.83540 3.20245 3.25738 3.39046 3.41035 3.49374 3.70316 3.86899 3.98086 4.07730 4.13859 4.14592 4.20233 4.32169 4.36397 4.40330 4.43635 4.51447 4.56905 4.58138 4.65942 4.70532 4.73071 4.79977 4.87661 4.98661 5.01155 5.02952 5.12808 5.25743 5.40916 5.52643 5.87480 6.04493 6.19211 6.33053 6.61248 7.09046 7.13156 7.56580 8.12907 8.70867 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.021099 B = 0.001587 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.746883 B =17636.611251 C =18353.721651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.536 5.536 3 C 0.060 3.940 4 C -0.119 4.119 5 C 0.120 3.880 6 N -0.608 5.608 7 C 0.068 3.932 8 C 0.530 3.470 9 O -0.588 6.588 10 C -0.173 4.173 11 H 0.162 0.838 12 C -0.092 4.092 13 C -0.215 4.215 14 H 0.104 0.896 15 C 0.293 3.707 16 F -0.216 7.216 17 F -0.221 7.221 18 C 0.057 3.943 19 C 0.440 3.560 20 O -0.616 6.616 21 N -0.574 5.574 22 C -0.334 4.334 23 H 0.078 0.922 24 C -0.013 4.013 25 N -0.920 5.920 26 Si 0.993 3.007 27 H -0.274 1.274 28 H -0.269 1.269 29 H -0.272 1.272 30 H 0.023 0.977 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.037 0.963 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.039 0.961 37 H 0.066 0.934 38 H 0.111 0.889 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.158 0.842 43 H 0.105 0.895 44 H 0.166 0.834 45 H 0.064 0.936 46 H 0.116 0.884 47 H 0.396 0.604 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.443 29.124 17.430 34.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.261 5.261 3 C -0.068 4.068 4 C -0.158 4.158 5 C -0.003 4.003 6 N -0.339 5.339 7 C -0.073 4.073 8 C 0.319 3.681 9 O -0.469 6.469 10 C -0.194 4.194 11 H 0.179 0.821 12 C -0.129 4.129 13 C -0.234 4.234 14 H 0.122 0.878 15 C 0.240 3.760 16 F -0.198 7.198 17 F -0.202 7.202 18 C -0.074 4.074 19 C 0.228 3.772 20 O -0.502 6.502 21 N -0.211 5.211 22 C -0.463 4.463 23 H 0.096 0.904 24 C -0.213 4.213 25 N -0.561 5.561 26 Si 0.817 3.183 27 H -0.199 1.199 28 H -0.194 1.194 29 H -0.197 1.197 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.055 0.945 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.129 0.871 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.176 0.824 43 H 0.123 0.877 44 H 0.183 0.817 45 H 0.082 0.918 46 H 0.134 0.866 47 H 0.230 0.770 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.873 28.561 17.849 33.802 hybrid contribution -0.820 -0.944 -1.568 2.005 sum 2.053 27.617 16.282 32.125 Atomic orbital electron populations 1.22363 0.87624 1.01881 0.99908 1.61535 1.08261 1.13914 1.42343 1.22131 1.01259 0.86469 0.96923 1.21796 1.00371 0.95671 0.97931 1.21432 1.01686 0.91316 0.85844 1.47881 1.20548 1.50794 1.14686 1.22171 0.93752 1.03993 0.87375 1.20176 0.80674 0.78234 0.88998 1.90707 1.51292 1.63229 1.41658 1.22352 1.01255 0.97802 0.97978 0.82110 1.23325 0.93344 0.89306 1.06960 1.23302 0.92199 1.08768 0.99175 0.87815 1.21840 0.82443 0.74091 0.97633 1.92969 1.53087 1.76546 1.97183 1.92986 1.93939 1.39569 1.93704 1.21761 1.02352 0.90134 0.93128 1.20793 0.83735 0.88798 0.83912 1.90461 1.45157 1.81454 1.33133 1.41927 1.50092 1.07038 1.22084 1.19619 1.34502 0.84090 1.08123 0.90404 1.26033 0.96262 1.04326 0.94654 1.69670 1.38085 1.37237 1.11086 0.84989 0.78533 0.76757 0.78050 1.19885 1.19392 1.19672 0.95871 0.92514 0.91360 0.94519 0.88368 0.90979 0.94218 0.91518 0.87097 0.89995 0.89262 0.90016 0.82407 0.87654 0.81700 0.91797 0.86596 0.76992 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.11 8.96 127.69 1.14 2.25 16 2 N -0.54 -18.37 4.50 -927.06 -4.17 -22.54 16 3 C 0.06 1.47 4.96 86.30 0.43 1.90 16 4 C -0.12 -2.69 5.46 30.59 0.17 -2.53 16 5 C 0.12 2.06 5.41 86.38 0.47 2.53 16 6 N -0.61 -9.28 2.87 -846.74 -2.43 -11.71 16 7 C 0.07 0.43 10.26 127.77 1.31 1.74 16 8 C 0.53 10.51 7.46 87.66 0.65 11.16 16 9 O -0.59 -17.66 15.83 -3.03 -0.05 -17.71 16 10 C -0.17 -1.90 4.96 -11.54 -0.06 -1.96 16 11 H 0.16 0.82 6.45 -2.39 -0.02 0.81 16 12 C -0.09 -0.49 9.88 30.62 0.30 -0.19 16 13 C -0.21 -2.80 5.41 -10.77 -0.06 -2.86 16 14 H 0.10 2.12 7.67 -2.39 -0.02 2.10 16 15 C 0.29 3.23 5.50 71.98 0.40 3.63 16 16 F -0.22 -3.61 17.34 44.97 0.78 -2.83 16 17 F -0.22 -3.93 17.29 44.97 0.78 -3.15 16 18 C 0.06 2.06 5.45 85.56 0.47 2.53 16 19 C 0.44 21.59 7.48 87.66 0.66 22.25 16 20 O -0.62 -35.03 13.91 -3.07 -0.04 -35.08 16 21 N -0.57 -30.07 5.29 -306.98 -1.62 -31.70 16 22 C -0.33 -19.29 9.68 84.04 0.81 -18.47 16 23 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 24 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 25 N -0.92 -50.11 13.05 21.66 0.28 -49.83 16 26 Si 0.99 43.55 29.55 68.60 2.03 45.57 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 28 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 29 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 30 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 2.50 5.82 -2.39 -0.01 2.49 16 32 H 0.07 2.32 6.47 -2.39 -0.02 2.31 16 33 H 0.04 0.88 8.12 -2.39 -0.02 0.86 16 34 H 0.10 1.94 7.93 -2.39 -0.02 1.92 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.04 1.13 6.55 -2.38 -0.02 1.11 16 37 H 0.07 1.40 7.41 -2.39 -0.02 1.38 16 38 H 0.11 1.23 8.07 -2.39 -0.02 1.21 16 39 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 40 H 0.09 0.27 6.00 -2.39 -0.01 0.26 16 41 H 0.08 0.50 8.07 -2.38 -0.02 0.48 16 42 H 0.16 -0.52 8.05 -2.39 -0.02 -0.53 16 43 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.17 0.08 7.90 -2.38 -0.02 0.06 16 45 H 0.06 2.10 8.12 -2.39 -0.02 2.08 16 46 H 0.12 3.52 7.93 -2.39 -0.02 3.50 16 47 H 0.40 19.63 7.90 -92.71 -0.73 18.90 16 48 H 0.28 14.17 8.31 -92.70 -0.77 13.40 16 Total: -1.00 -82.38 403.83 2.96 -79.42 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: 0.26 Total: 27.81 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: 7.16 Total: 21.75 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -7.95 Total: -115.79 kcal Atomic # 8 Polarization: -52.69 SS G_CDS: -0.09 Total: -52.78 kcal Atomic # 9 Polarization: -7.54 SS G_CDS: 1.56 Total: -5.98 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -82.38 2.96 -79.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484740323.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.262 kcal (2) G-P(sol) polarization free energy of solvation -82.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds