Wall clock time and date at job start Wed Apr 1 2020 05:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40230 * 126.65354 * 2 1 4 4 N 1.28652 * 109.50814 * 179.97438 * 3 2 1 5 5 C 1.35427 * 110.12895 * 0.02562 * 4 3 2 6 6 C 1.39795 * 133.04753 * 180.32635 * 5 4 3 7 7 C 1.38876 * 119.56149 * 180.21925 * 6 5 4 8 8 C 1.47716 * 119.86556 * 179.70970 * 7 6 5 9 9 O 1.21574 * 119.99523 * 359.72657 * 8 7 6 10 10 N 1.34777 * 120.00478 * 179.45626 * 8 7 6 11 11 C 1.46496 * 119.99955 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47011 * 179.97438 * 11 10 8 13 13 O 1.42901 * 109.46796 * 64.99883 * 12 11 10 14 14 C 1.42906 * 113.99860 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.47095 * 180.02562 * 14 13 12 16 16 C 1.52993 * 109.46985 * 180.02562 * 15 14 13 17 17 N 1.46504 * 109.47040 * 180.02562 * 16 15 14 18 18 C 1.36935 * 119.99896 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00304 * 0.02562 * 18 17 16 20 20 C 1.38817 * 120.00031 * 180.02562 * 18 17 16 21 21 N 1.31620 * 120.00361 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99709 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47248 * 90.00218 * 22 20 18 24 24 H 1.48500 * 109.46997 * 210.00269 * 22 20 18 25 25 H 1.48500 * 109.47188 * 329.99748 * 22 20 18 26 26 C 1.40254 * 120.27575 * 359.43768 * 7 6 5 27 27 C 1.36263 * 120.45261 * 0.24944 * 26 7 6 28 28 C 1.37268 * 126.66097 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47575 * 270.00266 * 1 2 3 30 30 H 1.08996 * 109.47117 * 30.00512 * 1 2 3 31 31 H 1.09009 * 109.46934 * 150.00046 * 1 2 3 32 32 H 1.07997 * 120.21545 * 359.92623 * 6 5 4 33 33 H 0.97004 * 119.99647 * 359.97438 * 10 8 7 34 34 H 1.08994 * 109.47859 * 299.99652 * 11 10 8 35 35 H 1.09001 * 109.47001 * 60.00248 * 11 10 8 36 36 H 1.08994 * 109.47495 * 185.00311 * 12 11 10 37 37 H 1.09007 * 109.47004 * 305.00559 * 12 11 10 38 38 H 1.08997 * 109.47400 * 300.00909 * 14 13 12 39 39 H 1.09000 * 109.46770 * 60.00721 * 14 13 12 40 40 H 1.08997 * 109.47223 * 300.00450 * 15 14 13 41 41 H 1.09000 * 109.46760 * 60.00669 * 15 14 13 42 42 H 1.08997 * 109.47443 * 300.00236 * 16 15 14 43 43 H 1.09006 * 109.47324 * 60.00778 * 16 15 14 44 44 H 0.97003 * 120.00040 * 0.02562 * 17 16 15 45 45 H 0.96998 * 120.00087 * 180.02562 * 21 20 18 46 46 H 1.07993 * 119.77840 * 180.27353 * 26 7 6 47 47 H 1.08001 * 119.92871 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3021 1.1250 0.0000 4 7 3.5314 0.7457 0.0005 5 6 3.6019 -0.6067 0.0004 6 6 4.6718 -1.5065 0.0066 7 6 4.4187 -2.8720 -0.0003 8 6 5.5442 -3.8287 -0.0003 9 8 6.6892 -3.4201 0.0007 10 7 5.3017 -5.1545 0.0042 11 6 6.4180 -6.1032 0.0037 12 6 5.8724 -7.5326 0.0100 13 8 5.1666 -7.7784 -1.2081 14 6 4.6142 -9.0928 -1.3047 15 6 3.8861 -9.2430 -2.6419 16 6 3.2941 -10.6500 -2.7450 17 7 2.5974 -10.7940 -4.0257 18 6 1.9850 -11.9771 -4.3427 19 1 2.0152 -12.8038 -3.6484 20 6 1.3252 -12.1137 -5.5564 21 7 0.7361 -13.2506 -5.8609 22 14 1.2736 -10.6840 -6.7575 23 1 2.4440 -10.7600 -7.6682 24 1 0.0217 -10.7512 -7.5535 25 1 1.3137 -9.4041 -6.0055 26 6 3.0989 -3.3465 -0.0014 27 6 2.0516 -2.4747 -0.0009 28 6 2.2845 -1.1011 0.0005 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3633 -0.8901 -0.5139 32 1 5.6884 -1.1421 0.0118 33 1 4.3881 -5.4804 0.0078 34 1 7.0250 -5.9496 -0.8885 35 1 7.0302 -5.9444 0.8914 36 1 6.6995 -8.2369 0.0992 37 1 5.1947 -7.6592 0.8544 38 1 5.4155 -9.8292 -1.2429 39 1 3.9106 -9.2521 -0.4876 40 1 3.0848 -8.5066 -2.7040 41 1 4.5900 -9.0839 -3.4587 42 1 4.0951 -11.3867 -2.6827 43 1 2.5900 -10.8088 -1.9281 44 1 2.5705 -10.0516 -4.6494 45 1 0.2755 -13.3462 -6.7092 46 1 2.9113 -4.4100 -0.0022 47 1 1.0386 -2.8494 -0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485794295.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:07 Heat of formation + Delta-G solvation = 45.567689 kcal Electronic energy + Delta-G solvation = -28395.713567 eV Core-core repulsion = 24195.302407 eV Total energy + Delta-G solvation = -4200.411160 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.60927 -40.28770 -38.41470 -37.58905 -35.69679 -35.26271 -34.92572 -32.44940 -31.45866 -31.24870 -30.41106 -29.16838 -28.07549 -25.44091 -24.89859 -23.89201 -22.74284 -22.23936 -21.72786 -21.17939 -21.05062 -18.82984 -17.96930 -17.59885 -17.19191 -16.89926 -16.68442 -16.65706 -16.08235 -15.41889 -15.30333 -14.85983 -14.78364 -14.46683 -14.28406 -14.09889 -13.83876 -13.78682 -13.66973 -13.42452 -13.20905 -12.86298 -12.74536 -12.46433 -12.33362 -12.25980 -11.95335 -11.65632 -11.31887 -11.23948 -11.06987 -10.97081 -10.76930 -10.73904 -10.38052 -10.17008 -9.77550 -9.63230 -9.55397 -9.40476 -8.93656 -8.90005 -7.28068 -5.80509 -3.16662 -0.08782 0.31529 1.50801 1.63895 2.37721 2.69252 3.25679 3.35187 3.37934 3.38914 3.43530 3.50556 3.81667 4.00727 4.20497 4.30573 4.46322 4.51014 4.52528 4.56141 4.66021 4.77669 4.78057 4.87128 5.01867 5.10247 5.13977 5.26564 5.27389 5.38472 5.40242 5.48914 5.50153 5.59386 5.60631 5.70714 5.86105 5.89888 5.90414 5.99594 6.05602 6.15266 6.64056 6.68690 7.00997 7.10353 7.43875 7.82354 7.95074 8.38363 9.17195 9.89577 10.09201 11.37675 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009636 B = 0.001877 C = 0.001631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2905.180588 B =14917.546834 C =17161.690014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.397 5.397 3 N -0.006 5.006 4 N -0.207 5.207 5 C -0.029 4.029 6 C 0.038 3.962 7 C -0.152 4.152 8 C 0.564 3.436 9 O -0.537 6.537 10 N -0.718 5.718 11 C 0.123 3.877 12 C 0.047 3.953 13 O -0.388 6.388 14 C 0.068 3.932 15 C -0.128 4.128 16 C 0.160 3.840 17 N -0.756 5.756 18 C -0.247 4.247 19 H 0.090 0.910 20 C 0.004 3.996 21 N -0.933 5.933 22 Si 0.886 3.114 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.277 1.277 26 C -0.038 4.038 27 C -0.124 4.124 28 C 0.106 3.894 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.154 0.846 33 H 0.404 0.596 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.028 0.972 43 H 0.027 0.973 44 H 0.362 0.638 45 H 0.260 0.740 46 H 0.143 0.857 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.596 24.860 18.399 31.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.190 5.190 3 N 0.014 4.986 4 N -0.086 5.086 5 C -0.153 4.153 6 C 0.015 3.985 7 C -0.158 4.158 8 C 0.352 3.648 9 O -0.414 6.414 10 N -0.371 5.371 11 C 0.000 4.000 12 C -0.030 4.030 13 O -0.308 6.308 14 C -0.009 4.009 15 C -0.166 4.166 16 C 0.033 3.967 17 N -0.402 5.402 18 C -0.377 4.377 19 H 0.108 0.892 20 C -0.192 4.192 21 N -0.581 5.581 22 Si 0.716 3.284 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.061 4.061 27 C -0.146 4.146 28 C -0.017 4.017 29 H 0.103 0.897 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.172 0.828 33 H 0.240 0.760 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.046 0.954 43 H 0.045 0.955 44 H 0.194 0.806 45 H 0.070 0.930 46 H 0.161 0.839 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.269 26.582 18.271 32.537 hybrid contribution -0.939 -0.520 -0.783 1.328 sum 3.329 26.062 17.488 31.562 Atomic orbital electron populations 1.22080 0.72404 1.05580 1.04367 1.50170 1.08074 1.03455 1.57347 1.81677 0.94006 1.07524 1.15394 1.74894 1.11236 1.10326 1.12180 1.19799 0.93047 0.90266 1.12151 1.20565 0.98547 0.89877 0.89554 1.19635 0.93512 0.93287 1.09381 1.17961 0.88301 0.82174 0.76413 1.90807 1.22177 1.78592 1.49864 1.45798 1.10725 1.05372 1.75166 1.21446 0.89046 0.86050 1.03484 1.22738 0.96679 0.95654 0.87913 1.87918 1.72135 1.32850 1.37854 1.22490 0.96651 0.83223 0.98537 1.21714 0.99982 0.99122 0.95820 1.20490 0.94573 0.92423 0.89227 1.42682 1.65710 1.14338 1.17465 1.19056 1.26233 0.90449 1.01922 0.89195 1.24692 1.00019 0.96775 0.97723 1.69703 1.40228 1.24187 1.24003 0.86524 0.77357 0.82774 0.81729 1.20995 1.21689 1.20295 1.20938 0.90786 1.00190 0.94151 1.19731 1.00764 0.87962 1.06176 1.19520 0.90946 0.90659 1.00534 0.89695 0.88235 0.88678 0.82795 0.75967 0.90150 0.89692 0.91340 0.92542 0.92976 0.93071 0.91276 0.91172 0.95425 0.95501 0.80565 0.93013 0.83923 0.84186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.27 11.52 59.84 0.69 0.96 16 2 N -0.40 -3.07 4.11 -65.43 -0.27 -3.33 16 3 N -0.01 -0.06 13.72 60.35 0.83 0.77 16 4 N -0.21 -2.41 12.40 32.15 0.40 -2.01 16 5 C -0.03 -0.30 7.26 -84.76 -0.62 -0.91 16 6 C 0.04 0.36 9.64 -38.76 -0.37 -0.02 16 7 C -0.15 -1.27 5.87 -105.03 -0.62 -1.89 16 8 C 0.56 5.59 7.76 -12.39 -0.10 5.50 16 9 O -0.54 -7.15 16.31 5.30 0.09 -7.06 16 10 N -0.72 -5.63 5.45 -61.29 -0.33 -5.96 16 11 C 0.12 0.95 6.06 -4.04 -0.02 0.92 16 12 C 0.05 0.34 6.07 37.16 0.23 0.57 16 13 O -0.39 -4.08 10.29 -35.23 -0.36 -4.44 16 14 C 0.07 0.75 5.94 37.16 0.22 0.97 16 15 C -0.13 -1.85 5.70 -26.73 -0.15 -2.00 16 16 C 0.16 2.94 6.26 -4.04 -0.03 2.92 16 17 N -0.76 -17.82 5.41 -59.91 -0.32 -18.15 16 18 C -0.25 -6.96 10.47 -15.06 -0.16 -7.12 16 19 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 20 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 21 N -0.93 -29.14 13.97 55.49 0.78 -28.36 16 22 Si 0.89 21.95 27.74 -169.99 -4.71 17.23 16 23 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.28 -6.42 6.52 56.52 0.37 -6.06 16 26 C -0.04 -0.23 9.46 -39.54 -0.37 -0.60 16 27 C -0.12 -0.72 9.97 -39.89 -0.40 -1.12 16 28 C 0.11 0.88 6.93 -84.09 -0.58 0.29 16 29 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.10 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.09 8.14 -51.92 -0.42 -0.33 16 32 H 0.15 1.45 7.62 -52.49 -0.40 1.05 16 33 H 0.40 2.39 6.47 -40.82 -0.26 2.12 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.36 8.32 5.53 -40.82 -0.23 8.09 16 45 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 46 H 0.14 0.49 6.36 -52.49 -0.33 0.16 16 47 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 LS Contribution 400.79 15.07 6.04 6.04 Total: -1.00 -37.20 400.79 -6.99 -44.18 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -6.73 Total: 2.62 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -2.38 Total: -1.53 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 1.07 Total: -57.04 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -0.28 Total: -11.50 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.23 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.20 -6.99 -44.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485794295.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.753 kcal (2) G-P(sol) polarization free energy of solvation -37.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds