Wall clock time and date at job start Wed Apr 1 2020 05:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40230 * 126.65354 * 2 1 4 4 N 1.28652 * 109.50814 * 179.97438 * 3 2 1 5 5 C 1.35427 * 110.12895 * 0.02562 * 4 3 2 6 6 C 1.39795 * 133.04753 * 180.32635 * 5 4 3 7 7 C 1.38876 * 119.56149 * 180.21925 * 6 5 4 8 8 C 1.47716 * 119.86556 * 179.70970 * 7 6 5 9 9 O 1.21574 * 119.99523 * 359.72657 * 8 7 6 10 10 N 1.34777 * 120.00478 * 179.45626 * 8 7 6 11 11 C 1.46496 * 119.99955 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47011 * 179.97438 * 11 10 8 13 13 O 1.42901 * 109.46796 * 64.99883 * 12 11 10 14 14 C 1.42906 * 113.99860 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.47095 * 180.02562 * 14 13 12 16 16 C 1.52993 * 109.46985 * 180.02562 * 15 14 13 17 17 N 1.46504 * 109.47040 * 180.02562 * 16 15 14 18 18 C 1.36935 * 119.99896 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00304 * 0.02562 * 18 17 16 20 20 C 1.38817 * 120.00031 * 180.02562 * 18 17 16 21 21 N 1.31620 * 120.00361 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99709 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47248 * 90.00218 * 22 20 18 24 24 H 1.48500 * 109.46997 * 210.00269 * 22 20 18 25 25 H 1.48500 * 109.47188 * 329.99748 * 22 20 18 26 26 C 1.40254 * 120.27575 * 359.43768 * 7 6 5 27 27 C 1.36263 * 120.45261 * 0.24944 * 26 7 6 28 28 C 1.37268 * 126.66097 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.47575 * 270.00266 * 1 2 3 30 30 H 1.08996 * 109.47117 * 30.00512 * 1 2 3 31 31 H 1.09009 * 109.46934 * 150.00046 * 1 2 3 32 32 H 1.07997 * 120.21545 * 359.92623 * 6 5 4 33 33 H 0.97004 * 119.99647 * 359.97438 * 10 8 7 34 34 H 1.08994 * 109.47859 * 299.99652 * 11 10 8 35 35 H 1.09001 * 109.47001 * 60.00248 * 11 10 8 36 36 H 1.08994 * 109.47495 * 185.00311 * 12 11 10 37 37 H 1.09007 * 109.47004 * 305.00559 * 12 11 10 38 38 H 1.08997 * 109.47400 * 300.00909 * 14 13 12 39 39 H 1.09000 * 109.46770 * 60.00721 * 14 13 12 40 40 H 1.08997 * 109.47223 * 300.00450 * 15 14 13 41 41 H 1.09000 * 109.46760 * 60.00669 * 15 14 13 42 42 H 1.08997 * 109.47443 * 300.00236 * 16 15 14 43 43 H 1.09006 * 109.47324 * 60.00778 * 16 15 14 44 44 H 0.97003 * 120.00040 * 0.02562 * 17 16 15 45 45 H 0.96998 * 120.00087 * 180.02562 * 21 20 18 46 46 H 1.07993 * 119.77840 * 180.27353 * 26 7 6 47 47 H 1.08001 * 119.92871 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3021 1.1250 0.0000 4 7 3.5314 0.7457 0.0005 5 6 3.6019 -0.6067 0.0004 6 6 4.6718 -1.5065 0.0066 7 6 4.4187 -2.8720 -0.0003 8 6 5.5442 -3.8287 -0.0003 9 8 6.6892 -3.4201 0.0007 10 7 5.3017 -5.1545 0.0042 11 6 6.4180 -6.1032 0.0037 12 6 5.8724 -7.5326 0.0100 13 8 5.1666 -7.7784 -1.2081 14 6 4.6142 -9.0928 -1.3047 15 6 3.8861 -9.2430 -2.6419 16 6 3.2941 -10.6500 -2.7450 17 7 2.5974 -10.7940 -4.0257 18 6 1.9850 -11.9771 -4.3427 19 1 2.0152 -12.8038 -3.6484 20 6 1.3252 -12.1137 -5.5564 21 7 0.7361 -13.2506 -5.8609 22 14 1.2736 -10.6840 -6.7575 23 1 2.4440 -10.7600 -7.6682 24 1 0.0217 -10.7512 -7.5535 25 1 1.3137 -9.4041 -6.0055 26 6 3.0989 -3.3465 -0.0014 27 6 2.0516 -2.4747 -0.0009 28 6 2.2845 -1.1011 0.0005 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3633 -0.8901 -0.5139 32 1 5.6884 -1.1421 0.0118 33 1 4.3881 -5.4804 0.0078 34 1 7.0250 -5.9496 -0.8885 35 1 7.0302 -5.9444 0.8914 36 1 6.6995 -8.2369 0.0992 37 1 5.1947 -7.6592 0.8544 38 1 5.4155 -9.8292 -1.2429 39 1 3.9106 -9.2521 -0.4876 40 1 3.0848 -8.5066 -2.7040 41 1 4.5900 -9.0839 -3.4587 42 1 4.0951 -11.3867 -2.6827 43 1 2.5900 -10.8088 -1.9281 44 1 2.5705 -10.0516 -4.6494 45 1 0.2755 -13.3462 -6.7092 46 1 2.9113 -4.4100 -0.0022 47 1 1.0386 -2.8494 -0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485794295.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:06 Heat of formation + Delta-G solvation = 16.822207 kcal Electronic energy + Delta-G solvation = -28396.960065 eV Core-core repulsion = 24195.302407 eV Total energy + Delta-G solvation = -4201.657658 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.22921 -41.01461 -39.16786 -38.23627 -37.16774 -35.92962 -35.75064 -34.16253 -32.39088 -31.86210 -31.68611 -29.96501 -28.48700 -26.86892 -25.64711 -24.45980 -23.90647 -23.35972 -22.41518 -22.27595 -21.87321 -19.65045 -19.44313 -18.47634 -17.89313 -17.63422 -17.35864 -17.23784 -16.86978 -16.59974 -16.18783 -15.98133 -15.60768 -15.37496 -15.31412 -15.23323 -14.80724 -14.55038 -14.45537 -14.18556 -13.95228 -13.87063 -13.58313 -13.49968 -13.33805 -13.05682 -12.85061 -12.78233 -12.61779 -12.27317 -12.10005 -11.94099 -11.92371 -11.87054 -11.78649 -11.75727 -11.18464 -10.96603 -10.48777 -10.24947 -10.03088 -9.46191 -9.29782 -8.02517 -5.36548 -0.71012 -0.28956 1.01682 1.05003 1.39659 1.43176 1.50528 1.67989 2.04231 2.49347 2.60331 2.64116 2.92435 3.28995 3.32767 3.46882 3.64411 3.71033 3.80984 3.95185 3.99411 4.14080 4.23402 4.26351 4.35017 4.38261 4.40274 4.44369 4.59088 4.64045 4.65413 4.74671 4.77236 4.81122 4.82562 4.86182 4.93209 5.04964 5.05783 5.30481 5.34079 5.35924 5.39611 5.56000 5.75885 6.21218 6.29459 6.47832 6.77313 7.08310 7.13927 7.84817 8.03068 9.18669 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.009636 B = 0.001877 C = 0.001631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2905.180588 B =14917.546834 C =17161.690014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.386 5.386 3 N -0.031 5.031 4 N -0.244 5.244 5 C -0.051 4.051 6 C 0.018 3.982 7 C -0.150 4.150 8 C 0.562 3.438 9 O -0.580 6.580 10 N -0.705 5.705 11 C 0.122 3.878 12 C 0.049 3.951 13 O -0.404 6.404 14 C 0.075 3.925 15 C -0.118 4.118 16 C 0.155 3.845 17 N -0.761 5.761 18 C -0.238 4.238 19 H 0.058 0.942 20 C -0.066 4.066 21 N -0.983 5.983 22 Si 0.957 3.043 23 H -0.280 1.280 24 H -0.295 1.295 25 H -0.249 1.249 26 C -0.034 4.034 27 C -0.109 4.109 28 C 0.099 3.901 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.139 0.861 33 H 0.416 0.584 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.026 0.974 43 H 0.032 0.968 44 H 0.366 0.634 45 H 0.258 0.742 46 H 0.176 0.824 47 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.253 25.184 19.187 31.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.181 5.181 3 N -0.011 5.011 4 N -0.122 5.122 5 C -0.176 4.176 6 C -0.006 4.006 7 C -0.156 4.156 8 C 0.350 3.650 9 O -0.461 6.461 10 N -0.358 5.358 11 C -0.001 4.001 12 C -0.027 4.027 13 O -0.324 6.324 14 C -0.001 4.001 15 C -0.156 4.156 16 C 0.029 3.971 17 N -0.407 5.407 18 C -0.369 4.369 19 H 0.076 0.924 20 C -0.258 4.258 21 N -0.634 5.634 22 Si 0.784 3.216 23 H -0.206 1.206 24 H -0.222 1.222 25 H -0.173 1.173 26 C -0.056 4.056 27 C -0.131 4.131 28 C -0.024 4.024 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.140 0.860 32 H 0.157 0.843 33 H 0.255 0.745 34 H 0.080 0.920 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.045 0.955 43 H 0.051 0.949 44 H 0.199 0.801 45 H 0.067 0.933 46 H 0.193 0.807 47 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 2.919 26.937 19.107 33.154 hybrid contribution -0.536 -0.716 -0.921 1.284 sum 2.382 26.222 18.186 32.000 Atomic orbital electron populations 1.22564 0.69613 1.07336 1.06092 1.50530 1.09445 1.02561 1.55558 1.81561 0.94206 1.08975 1.16341 1.74845 1.12069 1.11512 1.13807 1.20027 0.94432 0.90044 1.13047 1.20507 0.98003 0.90690 0.91355 1.19627 0.94390 0.92340 1.09272 1.18211 0.88027 0.82943 0.75810 1.90786 1.23929 1.79349 1.52009 1.45740 1.11522 1.04641 1.73876 1.21480 0.89025 0.86501 1.03105 1.22869 0.97406 0.95092 0.87348 1.87871 1.72584 1.32298 1.39651 1.22310 0.97056 0.83825 0.96946 1.21526 1.00030 0.96195 0.97803 1.20676 0.94260 0.95212 0.86939 1.42735 1.65715 1.12817 1.19475 1.19060 1.25474 0.91240 1.01103 0.92389 1.25562 1.00361 0.99809 1.00038 1.69886 1.41943 1.26836 1.24691 0.85377 0.76952 0.80230 0.79036 1.20642 1.22172 1.17288 1.21251 0.89339 1.01855 0.93124 1.20165 1.02567 0.86414 1.03950 1.19858 0.90146 0.91818 1.00608 0.87904 0.87467 0.86016 0.84298 0.74541 0.92019 0.88724 0.90044 0.90187 0.92339 0.91244 0.90969 0.91919 0.95549 0.94947 0.80056 0.93303 0.80683 0.80262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.24 11.52 127.77 1.47 1.71 16 2 N -0.39 -5.42 4.11 -360.93 -1.48 -6.91 16 3 N -0.03 -0.66 13.72 37.02 0.51 -0.16 16 4 N -0.24 -6.03 12.40 -52.21 -0.65 -6.67 16 5 C -0.05 -1.07 7.26 39.57 0.29 -0.79 16 6 C 0.02 0.35 9.64 22.80 0.22 0.57 16 7 C -0.15 -2.38 5.87 -20.13 -0.12 -2.50 16 8 C 0.56 10.73 7.76 86.75 0.67 11.40 16 9 O -0.58 -15.87 16.31 -3.95 -0.06 -15.93 16 10 N -0.71 -9.41 5.45 -466.10 -2.54 -11.95 16 11 C 0.12 1.63 6.06 86.38 0.52 2.15 16 12 C 0.05 0.53 6.07 71.98 0.44 0.97 16 13 O -0.40 -7.02 10.29 -148.98 -1.53 -8.55 16 14 C 0.08 1.37 5.94 71.98 0.43 1.80 16 15 C -0.12 -3.01 5.70 30.59 0.17 -2.84 16 16 C 0.16 5.35 6.26 86.38 0.54 5.89 16 17 N -0.76 -34.53 5.41 -343.45 -1.86 -36.39 16 18 C -0.24 -13.39 10.47 84.04 0.88 -12.51 16 19 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 20 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 21 N -0.98 -62.36 13.97 21.65 0.30 -62.06 16 22 Si 0.96 44.62 27.74 68.60 1.90 46.52 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 24 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 25 H -0.25 -10.30 6.52 99.48 0.65 -9.65 16 26 C -0.03 -0.29 9.46 22.30 0.21 -0.08 16 27 C -0.11 -0.87 9.97 22.07 0.22 -0.65 16 28 C 0.10 1.48 6.93 39.16 0.27 1.75 16 29 H 0.10 -0.03 8.14 -2.39 -0.02 -0.04 16 30 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.12 -0.27 8.14 -2.38 -0.02 -0.29 16 32 H 0.14 3.02 7.62 -2.91 -0.02 3.00 16 33 H 0.42 3.36 6.47 -92.71 -0.60 2.76 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.08 0.71 8.14 -2.39 -0.02 0.70 16 37 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 38 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 42 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 44 H 0.37 15.81 5.53 -92.71 -0.51 15.30 16 45 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 46 H 0.18 0.33 6.36 -2.91 -0.02 0.31 16 47 H 0.18 0.03 8.06 -2.91 -0.02 0.00 16 Total: -1.00 -84.33 400.79 1.11 -83.21 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -0.16 Total: 15.38 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 6.69 Total: 3.50 kcal Atomic # 7 Polarization: -118.41 SS G_CDS: -5.72 Total: -124.13 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -1.60 Total: -24.48 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.90 Total: 46.52 kcal Total: -84.33 1.11 -83.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485794295.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.034 kcal (2) G-P(sol) polarization free energy of solvation -84.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds