Wall clock time and date at job start Wed Apr 1 2020 05:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36945 * 119.99832 * 2 1 4 4 H 1.07998 * 119.99823 * 163.77392 * 3 2 1 5 5 C 1.38811 * 119.99922 * 343.50279 * 3 2 1 6 6 N 1.31618 * 120.00202 * 344.87083 * 5 3 2 7 7 Si 1.86803 * 119.99973 * 164.87489 * 5 3 2 8 8 H 1.48502 * 109.46724 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47306 * 119.99833 * 7 5 3 10 10 H 1.48500 * 109.46911 * 239.99817 * 7 5 3 11 11 C 1.46501 * 120.00634 * 180.02562 * 2 1 3 12 12 C 1.52994 * 109.46981 * 270.00531 * 11 2 1 13 13 H 1.09001 * 109.47044 * 304.99274 * 12 11 2 14 14 O 1.42901 * 109.47384 * 64.99474 * 12 11 2 15 15 C 1.53005 * 109.47109 * 184.99377 * 12 11 2 16 16 N 1.46500 * 109.47423 * 179.97438 * 15 12 11 17 17 C 1.46493 * 120.00042 * 89.99684 * 16 15 12 18 18 C 1.34774 * 119.99934 * 270.00606 * 16 15 12 19 19 O 1.21547 * 120.00201 * 5.39884 * 18 16 15 20 20 C 1.47980 * 119.99877 * 185.40533 * 18 16 15 21 21 C 1.39728 * 119.42766 * 186.77713 * 20 18 16 22 22 C 1.36992 * 119.59852 * 179.70800 * 21 20 18 23 23 C 1.39891 * 118.35848 * 0.55777 * 22 21 20 24 24 N 1.35435 * 133.81442 * 179.74033 * 23 22 21 25 25 C 1.30210 * 109.57977 * 179.97438 * 24 23 22 26 26 N 1.35993 * 110.18021 * 0.02562 * 25 24 23 27 27 C 1.46498 * 126.29144 * 180.02562 * 26 25 24 28 28 C 1.37944 * 107.41512 * 359.97438 * 26 25 24 29 29 N 1.31881 * 133.83335 * 180.02562 * 28 26 25 30 30 H 1.09005 * 109.46753 * 84.75410 * 1 2 3 31 31 H 1.09000 * 109.47165 * 204.75215 * 1 2 3 32 32 H 1.08998 * 109.47554 * 324.75113 * 1 2 3 33 33 H 0.96996 * 120.00108 * 179.97438 * 6 5 3 34 34 H 1.09008 * 109.46395 * 29.99983 * 11 2 1 35 35 H 1.08992 * 109.47261 * 149.99795 * 11 2 1 36 36 H 0.96699 * 113.99793 * 60.00382 * 14 12 11 37 37 H 1.09001 * 109.47083 * 299.99873 * 15 12 11 38 38 H 1.09003 * 109.46884 * 60.00226 * 15 12 11 39 39 H 1.09003 * 109.46783 * 95.31403 * 17 16 15 40 40 H 1.09006 * 109.47592 * 215.31475 * 17 16 15 41 41 H 1.09006 * 109.47414 * 335.31570 * 17 16 15 42 42 H 1.08007 * 120.20036 * 359.97438 * 21 20 18 43 43 H 1.07996 * 120.81852 * 180.28596 * 22 21 20 44 44 H 1.07997 * 124.91173 * 180.02562 * 25 24 23 45 45 H 1.09005 * 109.47347 * 269.99812 * 27 26 25 46 46 H 1.08994 * 109.47288 * 30.00218 * 27 26 25 47 47 H 1.09008 * 109.46695 * 150.00408 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1974 1.2046 0.2614 5 6 1.4984 2.3634 -0.3414 6 7 0.3295 2.3178 -0.9447 7 14 2.2810 4.0125 0.0554 8 1 3.5852 3.7918 0.7304 9 1 2.4961 4.7736 -1.2014 10 1 1.3836 4.7830 0.9533 11 6 2.1976 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4417 13 1 2.9642 -0.9139 1.9811 14 8 1.2060 -1.9944 2.0804 15 6 3.3238 -2.9687 1.4430 16 7 3.5685 -3.3919 2.8240 17 6 2.6483 -4.3257 3.4779 18 6 4.6399 -2.9221 3.4930 19 8 5.3481 -2.0735 2.9873 20 6 4.9544 -3.4395 4.8433 21 6 5.9798 -2.8463 5.5842 22 6 6.2699 -3.3186 6.8370 23 6 5.5274 -4.3974 7.3287 24 7 5.5478 -5.0994 8.4868 25 6 4.6340 -6.0263 8.4513 26 7 3.9661 -5.9816 7.2675 27 6 2.8702 -6.8626 6.8564 28 6 4.5095 -4.9536 6.5255 29 7 4.2619 -4.4622 5.3270 30 1 -0.3633 0.0940 -1.0234 31 1 -0.3633 -0.9332 0.4303 32 1 -0.3634 0.8392 0.5931 33 1 -0.1257 3.1405 -1.1829 34 1 1.6085 -2.0281 -0.5148 35 1 3.1499 -1.1380 -0.5143 36 1 0.6956 -2.6957 1.6529 37 1 2.8121 -3.7657 0.9036 38 1 4.2747 -2.7524 0.9558 39 1 3.0307 -5.3417 3.3789 40 1 2.5621 -4.0712 4.5343 41 1 1.6675 -4.2591 3.0069 42 1 6.5376 -2.0176 5.1734 43 1 7.0553 -2.8719 7.4286 44 1 4.4352 -6.7291 9.2469 45 1 3.2775 -7.7357 6.3465 46 1 2.3122 -7.1831 7.7361 47 1 2.2055 -6.3244 6.1805 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486348144.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:15 Heat of formation + Delta-G solvation = 62.435082 kcal Electronic energy + Delta-G solvation = -30677.855466 eV Core-core repulsion = 26478.175731 eV Total energy + Delta-G solvation = -4199.679735 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.75543 -40.25683 -38.32501 -37.28248 -35.45475 -34.92007 -34.45543 -32.26040 -31.38697 -30.58548 -29.42379 -27.63855 -26.78331 -26.15625 -25.64558 -24.46251 -23.32161 -22.03798 -21.26123 -20.54256 -20.00859 -18.23576 -17.91197 -17.15796 -16.75849 -16.61143 -16.13211 -15.83556 -15.42376 -15.09432 -14.87482 -14.80044 -14.59342 -14.05858 -13.87035 -13.70048 -13.60704 -13.32918 -13.18193 -12.94679 -12.82993 -12.76367 -12.61321 -12.23524 -11.81292 -11.45544 -11.24364 -11.13308 -11.05478 -10.82787 -10.65229 -10.49621 -10.27253 -10.21761 -9.95977 -9.77891 -9.72892 -9.31708 -9.09451 -8.88486 -8.54864 -8.29045 -6.67702 -5.63201 -3.03341 0.13796 0.91358 1.85137 2.15827 2.80928 2.94166 3.45681 3.52843 3.56021 3.56749 3.65484 3.81986 4.11416 4.29635 4.56911 4.58426 4.63215 4.65975 4.82119 4.92075 4.98993 5.15315 5.21395 5.30948 5.39550 5.49726 5.52456 5.64796 5.73263 5.78581 5.87574 5.92150 5.95772 6.02220 6.09341 6.23402 6.42201 6.56822 6.65263 6.83464 6.90818 7.24557 7.27451 7.41695 7.57069 7.79335 7.93017 8.13361 8.21684 8.46268 9.33221 9.97117 10.42731 11.41787 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017240 B = 0.002431 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.759357 B =11516.739288 C =12340.308555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.171 3.829 2 N -0.596 5.596 3 C -0.249 4.249 4 H 0.071 0.929 5 C -0.003 4.003 6 N -0.911 5.911 7 Si 0.902 3.098 8 H -0.278 1.278 9 H -0.292 1.292 10 H -0.290 1.290 11 C 0.128 3.872 12 C 0.069 3.931 13 H 0.101 0.899 14 O -0.549 6.549 15 C 0.083 3.917 16 N -0.584 5.584 17 C 0.098 3.902 18 C 0.567 3.433 19 O -0.524 6.524 20 C 0.125 3.875 21 C -0.124 4.124 22 C -0.027 4.027 23 C 0.020 3.980 24 N -0.491 5.491 25 C 0.279 3.721 26 N -0.484 5.484 27 C 0.080 3.920 28 C 0.228 3.772 29 N -0.442 5.442 30 H 0.021 0.979 31 H -0.001 1.001 32 H 0.046 0.954 33 H 0.250 0.750 34 H 0.039 0.961 35 H 0.056 0.944 36 H 0.356 0.644 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.158 0.842 43 H 0.149 0.851 44 H 0.223 0.777 45 H 0.077 0.923 46 H 0.091 0.909 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.677 -24.012 17.129 30.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.317 5.317 3 C -0.378 4.378 4 H 0.088 0.912 5 C -0.200 4.200 6 N -0.557 5.557 7 Si 0.733 3.267 8 H -0.203 1.203 9 H -0.219 1.219 10 H -0.217 1.217 11 C -0.002 4.002 12 C 0.006 3.994 13 H 0.119 0.881 14 O -0.352 6.352 15 C -0.041 4.041 16 N -0.315 5.315 17 C -0.045 4.045 18 C 0.352 3.648 19 O -0.400 6.400 20 C -0.024 4.024 21 C -0.147 4.147 22 C -0.054 4.054 23 C -0.101 4.101 24 N -0.210 5.210 25 C -0.007 4.007 26 N -0.177 5.177 27 C -0.062 4.062 28 C -0.008 4.008 29 N -0.159 5.159 30 H 0.040 0.960 31 H 0.017 0.983 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.201 0.799 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.069 0.931 40 H 0.102 0.898 41 H 0.082 0.918 42 H 0.176 0.824 43 H 0.167 0.833 44 H 0.239 0.761 45 H 0.096 0.904 46 H 0.109 0.891 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.886 -23.260 17.300 29.579 hybrid contribution 0.080 0.469 -0.212 0.521 sum 5.966 -22.790 17.087 29.103 Atomic orbital electron populations 1.20758 0.82108 0.95789 0.98667 1.43803 1.02101 1.00231 1.85596 1.19297 0.94813 0.84608 1.39093 0.91162 1.24871 0.97501 0.98127 0.99536 1.70135 1.16436 1.25964 1.43163 0.86201 0.78638 0.84290 0.77609 1.20257 1.21875 1.21699 1.21276 0.96858 0.89387 0.92642 1.23344 0.83406 0.94625 0.98015 0.88100 1.86669 1.32822 1.59324 1.56391 1.22432 1.02171 0.98252 0.81205 1.47576 1.24672 1.45190 1.14062 1.22013 0.91939 0.91578 0.98946 1.17757 0.81369 0.81843 0.83795 1.90842 1.50574 1.30871 1.67702 1.20981 0.93789 0.92401 0.95181 1.21599 0.97779 1.01455 0.93867 1.20466 0.97833 0.92567 0.94576 1.19864 0.98493 0.99117 0.92634 1.70440 1.21364 1.07728 1.21500 1.25512 0.89310 0.97958 0.87907 1.45046 1.30991 1.27056 1.14582 1.22078 0.87886 0.93674 1.02548 1.19028 0.96245 0.93122 0.92450 1.66875 1.26474 1.11625 1.10907 0.96045 0.98255 0.93569 0.93977 0.94308 0.92617 0.79912 0.90384 0.89075 0.93145 0.89754 0.91794 0.82392 0.83338 0.76076 0.90411 0.89073 0.88989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.37 8.75 59.84 0.52 4.90 16 2 N -0.60 -15.40 2.90 -181.12 -0.52 -15.93 16 3 C -0.25 -7.14 9.71 -15.06 -0.15 -7.29 16 4 H 0.07 2.00 7.88 -52.49 -0.41 1.59 16 5 C 0.00 -0.09 5.08 -17.43 -0.09 -0.18 16 6 N -0.91 -27.50 10.46 55.49 0.58 -26.92 16 7 Si 0.90 22.96 29.58 -169.99 -5.03 17.93 16 8 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 9 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 10 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 11 C 0.13 2.57 5.30 -4.04 -0.02 2.55 16 12 C 0.07 1.24 3.48 -26.73 -0.09 1.15 16 13 H 0.10 2.25 8.14 -51.93 -0.42 1.83 16 14 O -0.55 -9.56 11.07 -35.23 -0.39 -9.95 16 15 C 0.08 1.17 5.04 -4.04 -0.02 1.15 16 16 N -0.58 -8.17 2.80 -182.64 -0.51 -8.68 16 17 C 0.10 1.08 8.78 59.84 0.53 1.60 16 18 C 0.57 8.88 7.64 -12.27 -0.09 8.78 16 19 O -0.52 -9.77 15.95 5.32 0.08 -9.68 16 20 C 0.12 1.68 6.56 -82.97 -0.54 1.14 16 21 C -0.12 -1.47 9.55 -39.48 -0.38 -1.85 16 22 C -0.03 -0.29 10.16 -39.41 -0.40 -0.69 16 23 C 0.02 0.23 7.25 -84.58 -0.61 -0.38 16 24 N -0.49 -5.10 11.27 -11.93 -0.13 -5.23 16 25 C 0.28 1.83 12.49 -89.74 -1.12 0.71 16 26 N -0.48 -3.58 3.20 -124.97 -0.40 -3.98 16 27 C 0.08 0.27 11.19 59.85 0.67 0.94 16 28 C 0.23 2.52 8.01 -155.74 -1.25 1.27 16 29 N -0.44 -5.33 6.17 -8.82 -0.05 -5.39 16 30 H 0.02 0.58 7.50 -51.93 -0.39 0.19 16 31 H 0.00 -0.02 7.22 -51.93 -0.37 -0.40 16 32 H 0.05 1.30 6.95 -51.93 -0.36 0.94 16 33 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.04 0.69 8.07 -51.92 -0.42 0.27 16 35 H 0.06 1.13 8.04 -51.93 -0.42 0.71 16 36 H 0.36 4.75 8.79 45.56 0.40 5.15 16 37 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16 38 H 0.09 1.37 7.50 -51.93 -0.39 0.98 16 39 H 0.05 0.49 7.99 -51.93 -0.41 0.07 16 40 H 0.08 1.00 5.79 -51.93 -0.30 0.70 16 41 H 0.06 0.63 7.00 -51.93 -0.36 0.27 16 42 H 0.16 1.78 7.62 -52.48 -0.40 1.38 16 43 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 44 H 0.22 0.29 8.06 -52.49 -0.42 -0.14 16 45 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 46 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 47 H 0.09 0.38 8.14 -51.92 -0.42 -0.04 16 LS Contribution 389.10 15.07 5.86 5.86 Total: -1.00 -38.09 389.10 -9.50 -47.58 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -5.93 Total: 0.56 kcal Atomic # 6 Polarization: 16.86 SS G_CDS: -3.05 Total: 13.81 kcal Atomic # 7 Polarization: -65.07 SS G_CDS: -1.04 Total: -66.12 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.31 Total: -19.63 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.03 Total: 17.93 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.09 -9.50 -47.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486348144.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.019 kcal (2) G-P(sol) polarization free energy of solvation -38.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds