Wall clock time and date at job start Wed Apr 1 2020 05:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36945 * 119.99832 * 2 1 4 4 H 1.07998 * 119.99823 * 163.77392 * 3 2 1 5 5 C 1.38811 * 119.99922 * 343.50279 * 3 2 1 6 6 N 1.31618 * 120.00202 * 344.87083 * 5 3 2 7 7 Si 1.86803 * 119.99973 * 164.87489 * 5 3 2 8 8 H 1.48502 * 109.46724 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47306 * 119.99833 * 7 5 3 10 10 H 1.48500 * 109.46911 * 239.99817 * 7 5 3 11 11 C 1.46501 * 120.00634 * 180.02562 * 2 1 3 12 12 C 1.52994 * 109.46981 * 270.00531 * 11 2 1 13 13 H 1.09001 * 109.47044 * 304.99274 * 12 11 2 14 14 O 1.42901 * 109.47384 * 64.99474 * 12 11 2 15 15 C 1.53005 * 109.47109 * 184.99377 * 12 11 2 16 16 N 1.46500 * 109.47423 * 179.97438 * 15 12 11 17 17 C 1.46493 * 120.00042 * 89.99684 * 16 15 12 18 18 C 1.34774 * 119.99934 * 270.00606 * 16 15 12 19 19 O 1.21547 * 120.00201 * 5.39884 * 18 16 15 20 20 C 1.47980 * 119.99877 * 185.40533 * 18 16 15 21 21 C 1.39728 * 119.42766 * 186.77713 * 20 18 16 22 22 C 1.36992 * 119.59852 * 179.70800 * 21 20 18 23 23 C 1.39891 * 118.35848 * 0.55777 * 22 21 20 24 24 N 1.35435 * 133.81442 * 179.74033 * 23 22 21 25 25 C 1.30210 * 109.57977 * 179.97438 * 24 23 22 26 26 N 1.35993 * 110.18021 * 0.02562 * 25 24 23 27 27 C 1.46498 * 126.29144 * 180.02562 * 26 25 24 28 28 C 1.37944 * 107.41512 * 359.97438 * 26 25 24 29 29 N 1.31881 * 133.83335 * 180.02562 * 28 26 25 30 30 H 1.09005 * 109.46753 * 84.75410 * 1 2 3 31 31 H 1.09000 * 109.47165 * 204.75215 * 1 2 3 32 32 H 1.08998 * 109.47554 * 324.75113 * 1 2 3 33 33 H 0.96996 * 120.00108 * 179.97438 * 6 5 3 34 34 H 1.09008 * 109.46395 * 29.99983 * 11 2 1 35 35 H 1.08992 * 109.47261 * 149.99795 * 11 2 1 36 36 H 0.96699 * 113.99793 * 60.00382 * 14 12 11 37 37 H 1.09001 * 109.47083 * 299.99873 * 15 12 11 38 38 H 1.09003 * 109.46884 * 60.00226 * 15 12 11 39 39 H 1.09003 * 109.46783 * 95.31403 * 17 16 15 40 40 H 1.09006 * 109.47592 * 215.31475 * 17 16 15 41 41 H 1.09006 * 109.47414 * 335.31570 * 17 16 15 42 42 H 1.08007 * 120.20036 * 359.97438 * 21 20 18 43 43 H 1.07996 * 120.81852 * 180.28596 * 22 21 20 44 44 H 1.07997 * 124.91173 * 180.02562 * 25 24 23 45 45 H 1.09005 * 109.47347 * 269.99812 * 27 26 25 46 46 H 1.08994 * 109.47288 * 30.00218 * 27 26 25 47 47 H 1.09008 * 109.46695 * 150.00408 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1974 1.2046 0.2614 5 6 1.4984 2.3634 -0.3414 6 7 0.3295 2.3178 -0.9447 7 14 2.2810 4.0125 0.0554 8 1 3.5852 3.7918 0.7304 9 1 2.4961 4.7736 -1.2014 10 1 1.3836 4.7830 0.9533 11 6 2.1976 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4417 13 1 2.9642 -0.9139 1.9811 14 8 1.2060 -1.9944 2.0804 15 6 3.3238 -2.9687 1.4430 16 7 3.5685 -3.3919 2.8240 17 6 2.6483 -4.3257 3.4779 18 6 4.6399 -2.9221 3.4930 19 8 5.3481 -2.0735 2.9873 20 6 4.9544 -3.4395 4.8433 21 6 5.9798 -2.8463 5.5842 22 6 6.2699 -3.3186 6.8370 23 6 5.5274 -4.3974 7.3287 24 7 5.5478 -5.0994 8.4868 25 6 4.6340 -6.0263 8.4513 26 7 3.9661 -5.9816 7.2675 27 6 2.8702 -6.8626 6.8564 28 6 4.5095 -4.9536 6.5255 29 7 4.2619 -4.4622 5.3270 30 1 -0.3633 0.0940 -1.0234 31 1 -0.3633 -0.9332 0.4303 32 1 -0.3634 0.8392 0.5931 33 1 -0.1257 3.1405 -1.1829 34 1 1.6085 -2.0281 -0.5148 35 1 3.1499 -1.1380 -0.5143 36 1 0.6956 -2.6957 1.6529 37 1 2.8121 -3.7657 0.9036 38 1 4.2747 -2.7524 0.9558 39 1 3.0307 -5.3417 3.3789 40 1 2.5621 -4.0712 4.5343 41 1 1.6675 -4.2591 3.0069 42 1 6.5376 -2.0176 5.1734 43 1 7.0553 -2.8719 7.4286 44 1 4.4352 -6.7291 9.2469 45 1 3.2775 -7.7357 6.3465 46 1 2.3122 -7.1831 7.7361 47 1 2.2055 -6.3244 6.1805 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486348144.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:14 Heat of formation + Delta-G solvation = 36.133405 kcal Electronic energy + Delta-G solvation = -30678.995992 eV Core-core repulsion = 26478.175731 eV Total energy + Delta-G solvation = -4200.820261 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.45579 -41.33075 -39.37750 -38.63545 -36.94927 -36.11194 -35.48639 -33.33568 -33.01653 -31.74183 -30.68206 -28.18327 -27.98661 -27.76052 -27.27113 -25.43750 -24.32023 -23.48974 -22.30143 -21.92476 -21.05516 -19.01338 -18.90725 -18.66223 -17.95864 -17.61227 -17.28371 -16.91206 -16.78375 -16.48953 -16.30235 -15.77851 -15.63015 -15.43060 -15.14567 -14.70150 -14.69283 -14.52160 -14.34695 -13.97222 -13.90601 -13.68702 -13.45383 -13.41844 -13.13507 -13.00173 -12.83189 -12.66112 -12.52308 -12.17471 -12.07343 -11.97451 -11.94398 -11.85721 -11.80854 -11.41202 -11.25299 -10.61600 -10.19611 -9.87015 -9.70080 -9.54350 -8.73809 -7.83301 -5.25014 -0.69645 0.07130 1.26213 1.37287 1.41517 1.43460 1.54417 1.85493 1.93991 2.49455 2.70892 2.82444 3.19231 3.27460 3.42980 3.56553 3.62901 3.72638 3.86658 4.06591 4.10980 4.16803 4.22035 4.39369 4.43927 4.48008 4.50745 4.56573 4.70977 4.77214 4.79078 4.86927 4.93037 4.93192 4.98848 5.08649 5.12240 5.24552 5.40502 5.45916 5.55023 5.58959 5.75906 5.88217 6.24311 6.30519 6.49318 6.61860 6.99163 7.03814 7.15598 7.90080 8.28460 9.19242 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017240 B = 0.002431 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.759357 B =11516.739288 C =12340.308555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.188 3.812 2 N -0.615 5.615 3 C -0.257 4.257 4 H 0.063 0.937 5 C -0.057 4.057 6 N -0.938 5.938 7 Si 0.962 3.038 8 H -0.274 1.274 9 H -0.287 1.287 10 H -0.291 1.291 11 C 0.124 3.876 12 C 0.091 3.909 13 H 0.049 0.951 14 O -0.561 6.561 15 C 0.092 3.908 16 N -0.584 5.584 17 C 0.101 3.899 18 C 0.559 3.441 19 O -0.569 6.569 20 C 0.096 3.904 21 C -0.130 4.130 22 C -0.031 4.031 23 C 0.010 3.990 24 N -0.530 5.530 25 C 0.306 3.694 26 N -0.481 5.481 27 C 0.073 3.927 28 C 0.208 3.792 29 N -0.435 5.435 30 H -0.002 1.002 31 H 0.038 0.962 32 H 0.009 0.991 33 H 0.247 0.753 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.378 0.622 37 H 0.121 0.879 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.154 0.846 43 H 0.168 0.832 44 H 0.277 0.723 45 H 0.090 0.910 46 H 0.127 0.873 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.033 -27.357 18.955 33.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.337 5.337 3 C -0.387 4.387 4 H 0.081 0.919 5 C -0.252 4.252 6 N -0.586 5.586 7 Si 0.791 3.209 8 H -0.198 1.198 9 H -0.214 1.214 10 H -0.218 1.218 11 C -0.003 4.003 12 C 0.028 3.972 13 H 0.067 0.933 14 O -0.368 6.368 15 C -0.031 4.031 16 N -0.313 5.313 17 C -0.041 4.041 18 C 0.346 3.654 19 O -0.448 6.448 20 C -0.051 4.051 21 C -0.154 4.154 22 C -0.059 4.059 23 C -0.112 4.112 24 N -0.250 5.250 25 C 0.020 3.980 26 N -0.172 5.172 27 C -0.067 4.067 28 C -0.030 4.030 29 N -0.151 5.151 30 H 0.017 0.983 31 H 0.057 0.943 32 H 0.028 0.972 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.227 0.773 37 H 0.139 0.861 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.172 0.828 43 H 0.185 0.815 44 H 0.293 0.707 45 H 0.109 0.891 46 H 0.146 0.854 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.214 -26.688 19.126 33.246 hybrid contribution 0.227 1.287 -0.617 1.445 sum 5.441 -25.402 18.510 31.897 Atomic orbital electron populations 1.20475 0.82168 0.96181 0.96857 1.44038 1.02441 1.01381 1.85876 1.19523 0.94773 0.86257 1.38181 0.91920 1.25591 0.98331 1.01163 1.00084 1.70272 1.17585 1.26366 1.44352 0.85269 0.77843 0.80486 0.77319 1.19829 1.21372 1.21770 1.21516 0.96580 0.87938 0.94284 1.22752 0.84127 0.95110 0.95228 0.93253 1.86625 1.32818 1.60583 1.56732 1.22276 1.01196 0.97669 0.81966 1.47694 1.24588 1.45080 1.13961 1.22121 0.92045 0.91579 0.98311 1.18170 0.81329 0.81310 0.84561 1.90801 1.52133 1.32897 1.68940 1.20691 0.95489 0.94132 0.94775 1.21596 0.97753 1.01595 0.94467 1.20651 0.98327 0.92696 0.94188 1.20188 0.98489 0.99186 0.93357 1.70466 1.23759 1.09452 1.21336 1.26663 0.86741 0.96550 0.88002 1.45417 1.31433 1.26264 1.14115 1.22419 0.86904 0.93040 1.04356 1.19346 0.96909 0.94426 0.92336 1.66784 1.25906 1.11019 1.11430 0.98326 0.94325 0.97185 0.94344 0.90874 0.93170 0.77345 0.86052 0.90232 0.91394 0.90662 0.90136 0.82826 0.81472 0.70745 0.89135 0.85428 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.62 8.75 127.77 1.12 10.74 16 2 N -0.61 -32.02 2.90 -726.95 -2.10 -34.13 16 3 C -0.26 -15.09 9.71 84.03 0.82 -14.28 16 4 H 0.06 3.69 7.88 -2.91 -0.02 3.67 16 5 C -0.06 -3.41 5.08 84.86 0.43 -2.98 16 6 N -0.94 -57.90 10.46 21.65 0.23 -57.67 16 7 Si 0.96 48.33 29.58 68.60 2.03 50.36 16 8 H -0.27 -13.40 7.11 99.48 0.71 -12.69 16 9 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 10 H -0.29 -14.53 7.11 99.48 0.71 -13.83 16 11 C 0.12 4.90 5.30 86.38 0.46 5.36 16 12 C 0.09 3.23 3.48 30.59 0.11 3.33 16 13 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 14 O -0.56 -18.56 11.07 -148.98 -1.65 -20.21 16 15 C 0.09 2.50 5.04 86.38 0.44 2.93 16 16 N -0.58 -15.95 2.80 -850.01 -2.38 -18.33 16 17 C 0.10 2.01 8.78 127.77 1.12 3.13 16 18 C 0.56 18.16 7.64 86.83 0.66 18.82 16 19 O -0.57 -22.56 15.95 -3.86 -0.06 -22.62 16 20 C 0.10 2.68 6.56 41.97 0.28 2.96 16 21 C -0.13 -3.29 9.55 22.34 0.21 -3.08 16 22 C -0.03 -0.69 10.16 22.38 0.23 -0.46 16 23 C 0.01 0.21 7.25 39.69 0.29 0.50 16 24 N -0.53 -9.90 11.27 -191.66 -2.16 -12.06 16 25 C 0.31 2.86 12.49 180.04 2.25 5.11 16 26 N -0.48 -5.60 3.20 -549.31 -1.76 -7.36 16 27 C 0.07 0.21 11.19 127.77 1.43 1.64 16 28 C 0.21 4.33 8.01 134.06 1.07 5.40 16 29 N -0.43 -10.26 6.17 -181.83 -1.12 -11.38 16 30 H 0.00 -0.08 7.50 -2.38 -0.02 -0.10 16 31 H 0.04 1.63 7.22 -2.39 -0.02 1.61 16 32 H 0.01 0.54 6.95 -2.39 -0.02 0.53 16 33 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 34 H 0.07 2.40 8.07 -2.38 -0.02 2.38 16 35 H 0.05 2.03 8.04 -2.39 -0.02 2.01 16 36 H 0.38 8.71 8.79 -74.06 -0.65 8.06 16 37 H 0.12 2.26 8.07 -2.39 -0.02 2.24 16 38 H 0.08 2.39 7.50 -2.39 -0.02 2.37 16 39 H 0.07 1.13 7.99 -2.39 -0.02 1.11 16 40 H 0.08 1.69 5.79 -2.38 -0.01 1.67 16 41 H 0.08 1.33 7.00 -2.38 -0.02 1.31 16 42 H 0.15 3.84 7.62 -2.91 -0.02 3.82 16 43 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 44 H 0.28 -0.90 8.06 -2.91 -0.02 -0.92 16 45 H 0.09 0.08 8.14 -2.38 -0.02 0.06 16 46 H 0.13 -0.53 8.14 -2.39 -0.02 -0.55 16 47 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 Total: -1.00 -87.75 389.10 2.28 -85.47 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 0.35 Total: 8.79 kcal Atomic # 6 Polarization: 28.23 SS G_CDS: 10.91 Total: 39.14 kcal Atomic # 7 Polarization: -131.64 SS G_CDS: -9.29 Total: -140.94 kcal Atomic # 8 Polarization: -41.12 SS G_CDS: -1.71 Total: -42.83 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 2.03 Total: 50.36 kcal Total: -87.75 2.28 -85.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486348144.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.604 kcal (2) G-P(sol) polarization free energy of solvation -87.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds