Wall clock time and date at job start Wed Apr 1 2020 04:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.46867 * 2 1 4 4 C 1.46504 * 120.00060 * 269.99966 * 3 2 1 5 5 C 1.50704 * 109.46854 * 270.00152 * 4 3 2 6 6 H 1.07992 * 119.99879 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99595 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00265 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99988 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46942 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47434 * 119.99625 * 9 7 5 12 12 H 1.48502 * 109.47114 * 240.00286 * 9 7 5 13 13 C 1.34781 * 120.00079 * 89.99994 * 3 2 1 14 14 O 1.21282 * 119.99644 * 179.97438 * 13 3 2 15 15 C 1.50692 * 119.99806 * 359.97438 * 13 3 2 16 16 N 1.46905 * 109.47325 * 179.97438 * 15 13 3 17 17 C 1.46897 * 111.00058 * 179.97438 * 16 15 13 18 18 C 1.53781 * 113.61158 * 204.99914 * 17 16 15 19 19 C 1.53780 * 87.08108 * 220.02281 * 18 17 16 20 20 N 1.46506 * 113.61595 * 139.98566 * 19 18 17 21 21 C 1.46504 * 119.99443 * 299.99913 * 20 19 18 22 22 C 1.34771 * 120.00015 * 119.99630 * 20 19 18 23 23 O 1.21279 * 120.00561 * 0.02562 * 22 20 19 24 24 C 1.50706 * 119.99821 * 179.97438 * 22 20 19 25 25 F 1.39897 * 109.47068 * 185.00143 * 24 22 20 26 26 F 1.39895 * 109.47042 * 305.00452 * 24 22 20 27 27 C 1.53776 * 87.08219 * 25.43270 * 19 18 17 28 28 H 1.08996 * 109.47611 * 300.00164 * 1 2 3 29 29 H 1.09000 * 109.47483 * 60.00299 * 1 2 3 30 30 H 1.08998 * 109.47279 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47000 * 240.00260 * 2 1 3 32 32 H 1.08999 * 109.46784 * 119.99967 * 2 1 3 33 33 H 1.08997 * 109.47239 * 30.00152 * 4 3 2 34 34 H 1.08997 * 109.47009 * 150.00353 * 4 3 2 35 35 H 0.97003 * 120.00081 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.47310 * 60.00033 * 15 13 3 37 37 H 1.09004 * 109.47497 * 299.99837 * 15 13 3 38 38 H 1.00897 * 110.99585 * 303.95646 * 16 15 13 39 39 H 1.08996 * 112.91157 * 336.24994 * 17 16 15 40 40 H 1.09004 * 113.61390 * 105.47855 * 18 17 16 41 41 H 1.09000 * 113.61846 * 334.57348 * 18 17 16 42 42 H 1.09001 * 113.61439 * 270.79867 * 19 18 17 43 43 H 1.09001 * 109.46978 * 269.99894 * 21 20 19 44 44 H 1.08993 * 109.47188 * 30.00384 * 21 20 19 45 45 H 1.09001 * 109.46387 * 150.00113 * 21 20 19 46 46 H 1.09001 * 109.46953 * 65.00160 * 24 22 20 47 47 H 1.09002 * 113.61386 * 89.11564 * 27 19 18 48 48 H 1.08994 * 113.61564 * 220.01850 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3427 1.2310 -1.0958 7 6 4.1493 2.3906 -2.8774 8 7 3.3493 3.1266 -3.6176 9 14 5.9133 2.0965 -3.4171 10 1 6.6007 1.2405 -2.4171 11 1 5.9204 1.4183 -4.7382 12 1 6.6215 3.3974 -3.5246 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1599 1.1671 15 6 1.9912 1.3064 2.4722 16 7 2.3100 2.2061 3.5889 17 6 2.0755 1.5462 4.8802 18 6 1.7911 2.5266 6.0303 19 6 2.6620 1.6189 6.9148 20 7 3.5322 2.3557 7.8347 21 6 4.5313 3.2891 7.3084 22 6 3.4135 2.1750 9.1649 23 8 2.5867 1.4020 9.6006 24 6 4.3090 2.9325 10.1112 25 9 4.0788 2.4969 11.4205 26 9 5.6466 2.7030 9.7717 27 6 3.3682 1.1714 5.6241 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5816 1.6878 -2.0284 34 1 2.0955 3.1410 -1.1384 35 1 3.6756 3.5177 -4.4431 36 1 2.6211 0.4187 2.5302 37 1 0.9431 1.0126 2.5299 38 1 3.2585 2.5435 3.5218 39 1 1.3568 0.7295 4.8149 40 1 0.7438 2.5547 6.3312 41 1 2.2141 3.5188 5.8730 42 1 2.1033 0.8228 7.4069 43 1 5.4681 2.7593 7.1359 44 1 4.1745 3.7117 6.3692 45 1 4.6945 4.0907 8.0288 46 1 4.0938 3.9987 10.0398 47 1 4.2224 1.7930 5.3557 48 1 3.5941 0.1054 5.5970 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486452662.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:50 Heat of formation + Delta-G solvation = -134.813318 kcal Electronic energy + Delta-G solvation = -30680.179622 eV Core-core repulsion = 26021.257368 eV Total energy + Delta-G solvation = -4658.922254 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -49.65307 -47.67116 -40.84538 -39.30496 -38.63955 -35.74013 -35.24242 -33.48061 -32.72382 -30.11644 -28.92253 -28.05218 -27.51861 -26.05085 -25.81306 -23.57048 -23.03279 -22.21085 -20.81974 -19.72048 -18.80916 -18.32244 -18.20616 -17.79807 -17.01679 -16.52223 -16.33400 -15.99668 -15.75655 -15.43152 -15.24921 -15.07611 -14.46781 -14.37357 -14.02862 -13.95370 -13.71168 -13.58329 -13.55360 -13.41888 -13.26967 -12.87508 -12.83162 -12.64642 -12.53453 -12.43293 -12.03730 -11.95165 -11.55025 -11.41829 -11.31505 -11.21533 -11.01972 -10.91117 -10.75427 -10.56534 -10.35015 -10.15733 -9.64210 -9.24264 -8.94402 -8.46436 -8.36339 -7.67455 -6.06868 -4.11673 1.61978 2.01046 3.15687 3.26804 3.33889 3.36662 3.42397 3.42658 3.69848 4.01375 4.08164 4.12501 4.22191 4.34272 4.42906 4.52200 4.54794 4.63802 4.94863 5.06412 5.14186 5.21149 5.24849 5.27711 5.33386 5.38476 5.42281 5.49202 5.54156 5.63044 5.69515 5.71738 5.79681 5.99010 6.02757 6.20849 6.45975 6.60133 6.83707 7.09968 7.26419 7.31370 7.44098 7.53720 7.89839 8.21290 8.41624 8.88247 9.09145 9.53551 11.01146 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.016349 B = 0.001960 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.224163 B =14282.944185 C =15453.181635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.598 5.598 4 C 0.247 3.753 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.504 3.496 14 O -0.530 6.530 15 C 0.040 3.960 16 N -0.658 5.658 17 C 0.073 3.927 18 C -0.136 4.136 19 C 0.118 3.882 20 N -0.586 5.586 21 C 0.065 3.935 22 C 0.472 3.528 23 O -0.504 6.504 24 C 0.258 3.742 25 F -0.176 7.176 26 F -0.186 7.186 27 C -0.178 4.178 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.031 0.969 34 H 0.043 0.957 35 H 0.263 0.737 36 H 0.054 0.946 37 H 0.095 0.905 38 H 0.354 0.646 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.123 0.877 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.072 0.928 46 H 0.136 0.864 47 H 0.093 0.907 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.392 -3.453 23.609 23.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.127 3.873 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.289 3.711 14 O -0.407 6.407 15 C -0.092 4.092 16 N -0.289 5.289 17 C -0.038 4.038 18 C -0.176 4.176 19 C 0.015 3.985 20 N -0.318 5.318 21 C -0.078 4.078 22 C 0.255 3.745 23 O -0.378 6.378 24 C 0.201 3.799 25 F -0.157 7.157 26 F -0.168 7.168 27 C -0.218 4.218 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.113 0.887 38 H 0.174 0.826 39 H 0.120 0.880 40 H 0.095 0.905 41 H 0.112 0.888 42 H 0.141 0.859 43 H 0.089 0.911 44 H 0.107 0.893 45 H 0.091 0.909 46 H 0.153 0.847 47 H 0.112 0.888 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.206 -2.847 23.627 23.900 hybrid contribution 1.889 -0.821 -0.376 2.093 sum -0.317 -3.668 23.251 23.540 Atomic orbital electron populations 1.22225 0.96778 1.01373 1.02410 1.21406 0.93532 0.84286 1.02555 1.48258 1.63940 1.13189 1.07733 1.19261 0.96196 0.93677 0.78127 1.21456 0.96922 1.31779 1.06213 0.92541 1.24945 0.97834 0.94970 0.96439 1.69941 1.35560 1.33449 1.14350 0.86454 0.84660 0.78032 0.78312 1.19883 1.20973 1.20878 1.20181 0.78920 0.87071 0.84902 1.90672 1.45276 1.17743 1.86962 1.21966 1.02291 0.94453 0.90524 1.60046 1.32483 1.36857 0.99522 1.22803 0.96362 0.96239 0.88432 1.23562 1.00520 0.99409 0.94082 1.22680 0.92222 0.95818 0.87815 1.47808 1.36487 1.42805 1.04746 1.22049 0.91783 0.92513 1.01428 1.21083 0.85582 0.83937 0.83862 1.90808 1.35708 1.34967 1.76349 1.21611 0.78296 1.00750 0.79285 1.93066 1.94195 1.91952 1.36522 1.93063 1.35328 1.96307 1.92062 1.24230 0.99275 1.02675 0.95664 0.93018 0.92003 0.92223 0.89987 0.91933 0.95061 0.93882 0.92766 0.92803 0.88693 0.82551 0.88003 0.90458 0.88801 0.85929 0.91091 0.89326 0.90896 0.84655 0.88832 0.90549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.11 1.61 5.93 -4.04 -0.02 1.59 16 3 N -0.60 -12.11 2.46 -175.06 -0.43 -12.54 16 4 C 0.25 6.31 5.16 -5.19 -0.03 6.28 16 5 C -0.52 -14.58 9.39 -34.44 -0.32 -14.90 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 9 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.50 9.91 7.71 -10.99 -0.08 9.83 16 14 O -0.53 -12.83 15.78 5.56 0.09 -12.74 16 15 C 0.04 0.54 4.56 -4.98 -0.02 0.52 16 16 N -0.66 -8.18 6.24 -107.13 -0.67 -8.85 16 17 C 0.07 0.65 4.18 -66.90 -0.28 0.37 16 18 C -0.14 -1.11 7.42 -25.92 -0.19 -1.31 16 19 C 0.12 0.94 4.21 -67.12 -0.28 0.66 16 20 N -0.59 -4.43 3.08 -173.00 -0.53 -4.96 16 21 C 0.06 0.33 8.05 59.85 0.48 0.81 16 22 C 0.47 4.35 7.53 -10.98 -0.08 4.27 16 23 O -0.50 -6.57 16.10 5.56 0.09 -6.48 16 24 C 0.26 1.74 4.63 36.01 0.17 1.91 16 25 F -0.18 -1.67 16.95 2.25 0.04 -1.63 16 26 F -0.19 -1.37 15.96 2.25 0.04 -1.34 16 27 C -0.18 -1.37 7.12 -25.92 -0.18 -1.56 16 28 H 0.05 0.62 7.22 -51.93 -0.37 0.25 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 32 H 0.06 0.77 6.44 -51.93 -0.33 0.44 16 33 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.05 0.64 7.40 -51.93 -0.38 0.26 16 37 H 0.09 1.13 7.18 -51.93 -0.37 0.76 16 38 H 0.35 4.63 7.90 -39.29 -0.31 4.32 16 39 H 0.10 0.82 7.87 -51.93 -0.41 0.41 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 0.79 6.92 -51.93 -0.36 0.43 16 42 H 0.12 1.10 7.23 -51.93 -0.38 0.73 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.09 0.44 6.34 -51.93 -0.33 0.11 16 45 H 0.07 0.22 6.40 -51.93 -0.33 -0.11 16 46 H 0.14 0.34 7.66 -51.93 -0.40 -0.06 16 47 H 0.09 0.71 6.41 -51.93 -0.33 0.37 16 48 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 397.64 15.07 5.99 5.99 Total: -1.00 -35.48 397.64 -7.44 -42.92 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -7.19 Total: 0.40 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -0.57 Total: 8.28 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -0.90 Total: -51.90 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: 0.18 Total: -19.22 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.07 Total: -2.97 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.48 -7.44 -42.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486452662.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.898 kcal (2) G-P(sol) polarization free energy of solvation -35.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds