Wall clock time and date at job start Wed Apr 1 2020 04:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.46867 * 2 1 4 4 C 1.46504 * 120.00060 * 269.99966 * 3 2 1 5 5 C 1.50704 * 109.46854 * 270.00152 * 4 3 2 6 6 H 1.07992 * 119.99879 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99595 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00265 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99988 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46942 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47434 * 119.99625 * 9 7 5 12 12 H 1.48502 * 109.47114 * 240.00286 * 9 7 5 13 13 C 1.34781 * 120.00079 * 89.99994 * 3 2 1 14 14 O 1.21282 * 119.99644 * 179.97438 * 13 3 2 15 15 C 1.50692 * 119.99806 * 359.97438 * 13 3 2 16 16 N 1.46905 * 109.47325 * 179.97438 * 15 13 3 17 17 C 1.46897 * 111.00058 * 179.97438 * 16 15 13 18 18 C 1.53781 * 113.61158 * 204.99914 * 17 16 15 19 19 C 1.53780 * 87.08108 * 220.02281 * 18 17 16 20 20 N 1.46506 * 113.61595 * 139.98566 * 19 18 17 21 21 C 1.46504 * 119.99443 * 299.99913 * 20 19 18 22 22 C 1.34771 * 120.00015 * 119.99630 * 20 19 18 23 23 O 1.21279 * 120.00561 * 0.02562 * 22 20 19 24 24 C 1.50706 * 119.99821 * 179.97438 * 22 20 19 25 25 F 1.39897 * 109.47068 * 185.00143 * 24 22 20 26 26 F 1.39895 * 109.47042 * 305.00452 * 24 22 20 27 27 C 1.53776 * 87.08219 * 25.43270 * 19 18 17 28 28 H 1.08996 * 109.47611 * 300.00164 * 1 2 3 29 29 H 1.09000 * 109.47483 * 60.00299 * 1 2 3 30 30 H 1.08998 * 109.47279 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47000 * 240.00260 * 2 1 3 32 32 H 1.08999 * 109.46784 * 119.99967 * 2 1 3 33 33 H 1.08997 * 109.47239 * 30.00152 * 4 3 2 34 34 H 1.08997 * 109.47009 * 150.00353 * 4 3 2 35 35 H 0.97003 * 120.00081 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.47310 * 60.00033 * 15 13 3 37 37 H 1.09004 * 109.47497 * 299.99837 * 15 13 3 38 38 H 1.00897 * 110.99585 * 303.95646 * 16 15 13 39 39 H 1.08996 * 112.91157 * 336.24994 * 17 16 15 40 40 H 1.09004 * 113.61390 * 105.47855 * 18 17 16 41 41 H 1.09000 * 113.61846 * 334.57348 * 18 17 16 42 42 H 1.09001 * 113.61439 * 270.79867 * 19 18 17 43 43 H 1.09001 * 109.46978 * 269.99894 * 21 20 19 44 44 H 1.08993 * 109.47188 * 30.00384 * 21 20 19 45 45 H 1.09001 * 109.46387 * 150.00113 * 21 20 19 46 46 H 1.09001 * 109.46953 * 65.00160 * 24 22 20 47 47 H 1.09002 * 113.61386 * 89.11564 * 27 19 18 48 48 H 1.08994 * 113.61564 * 220.01850 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3427 1.2310 -1.0958 7 6 4.1493 2.3906 -2.8774 8 7 3.3493 3.1266 -3.6176 9 14 5.9133 2.0965 -3.4171 10 1 6.6007 1.2405 -2.4171 11 1 5.9204 1.4183 -4.7382 12 1 6.6215 3.3974 -3.5246 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1599 1.1671 15 6 1.9912 1.3064 2.4722 16 7 2.3100 2.2061 3.5889 17 6 2.0755 1.5462 4.8802 18 6 1.7911 2.5266 6.0303 19 6 2.6620 1.6189 6.9148 20 7 3.5322 2.3557 7.8347 21 6 4.5313 3.2891 7.3084 22 6 3.4135 2.1750 9.1649 23 8 2.5867 1.4020 9.6006 24 6 4.3090 2.9325 10.1112 25 9 4.0788 2.4969 11.4205 26 9 5.6466 2.7030 9.7717 27 6 3.3682 1.1714 5.6241 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5816 1.6878 -2.0284 34 1 2.0955 3.1410 -1.1384 35 1 3.6756 3.5177 -4.4431 36 1 2.6211 0.4187 2.5302 37 1 0.9431 1.0126 2.5299 38 1 3.2585 2.5435 3.5218 39 1 1.3568 0.7295 4.8149 40 1 0.7438 2.5547 6.3312 41 1 2.2141 3.5188 5.8730 42 1 2.1033 0.8228 7.4069 43 1 5.4681 2.7593 7.1359 44 1 4.1745 3.7117 6.3692 45 1 4.6945 4.0907 8.0288 46 1 4.0938 3.9987 10.0398 47 1 4.2224 1.7930 5.3557 48 1 3.5941 0.1054 5.5970 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486452662.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:44 Heat of formation + Delta-G solvation = -160.280667 kcal Electronic energy + Delta-G solvation = -30681.283969 eV Core-core repulsion = 26021.257368 eV Total energy + Delta-G solvation = -4660.026601 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 2.95 seconds Orbital eigenvalues (eV) -50.22931 -48.26472 -41.53328 -40.67040 -39.54909 -36.96730 -36.37003 -34.95708 -34.23705 -31.58616 -29.82052 -29.22506 -28.24727 -27.20883 -26.66217 -24.83542 -24.25790 -23.60212 -21.50517 -20.46938 -19.71010 -19.37484 -18.77662 -18.60399 -18.42426 -17.94629 -17.40627 -17.28930 -16.80965 -16.40416 -16.28621 -16.07998 -15.84652 -15.05914 -15.02448 -14.73530 -14.67389 -14.61827 -14.60957 -14.30691 -14.22639 -14.15862 -13.58850 -13.46037 -13.42790 -13.26703 -13.23257 -13.19566 -13.08033 -12.87563 -12.66982 -12.46349 -12.16113 -12.08604 -12.05073 -11.83710 -11.70566 -11.66021 -11.03429 -10.64443 -10.51498 -9.86274 -9.39901 -9.28234 -8.21307 -6.36245 0.94825 1.36793 1.38850 1.42407 1.50521 1.90358 2.27952 2.43551 2.65000 2.95617 3.07968 3.21798 3.46244 3.54304 3.60165 3.68695 3.77213 3.90650 3.94547 4.11938 4.13893 4.35321 4.43732 4.47748 4.53400 4.56011 4.68100 4.71189 4.75472 4.84977 4.93494 4.94689 5.01639 5.05208 5.07405 5.08063 5.24708 5.38162 5.41651 5.59853 5.87144 5.97653 6.07168 6.08886 6.34925 6.61950 6.72671 6.86992 7.30258 7.55505 8.85755 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.016349 B = 0.001960 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.224163 B =14282.944185 C =15453.181635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.262 3.738 5 C -0.538 4.538 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.968 3.032 10 H -0.265 1.265 11 H -0.271 1.271 12 H -0.282 1.282 13 C 0.493 3.507 14 O -0.587 6.587 15 C 0.058 3.942 16 N -0.673 5.673 17 C 0.074 3.926 18 C -0.131 4.131 19 C 0.118 3.882 20 N -0.581 5.581 21 C 0.057 3.943 22 C 0.466 3.534 23 O -0.552 6.552 24 C 0.260 3.740 25 F -0.194 7.194 26 F -0.189 7.189 27 C -0.168 4.168 28 H 0.061 0.939 29 H 0.035 0.965 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.019 0.981 34 H -0.005 1.005 35 H 0.266 0.734 36 H 0.081 0.919 37 H 0.120 0.880 38 H 0.348 0.652 39 H 0.117 0.883 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.112 0.888 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.098 0.902 46 H 0.187 0.813 47 H 0.096 0.904 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.529 -4.743 24.870 25.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.141 3.859 5 C -0.577 4.577 6 H 0.072 0.928 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.793 3.207 10 H -0.189 1.189 11 H -0.196 1.196 12 H -0.208 1.208 13 C 0.281 3.719 14 O -0.467 6.467 15 C -0.074 4.074 16 N -0.304 5.304 17 C -0.036 4.036 18 C -0.170 4.170 19 C 0.015 3.985 20 N -0.311 5.311 21 C -0.084 4.084 22 C 0.250 3.750 23 O -0.430 6.430 24 C 0.204 3.796 25 F -0.175 7.175 26 F -0.170 7.170 27 C -0.208 4.208 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.037 0.963 34 H 0.013 0.987 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.137 0.863 38 H 0.168 0.832 39 H 0.135 0.865 40 H 0.095 0.905 41 H 0.110 0.890 42 H 0.130 0.870 43 H 0.092 0.908 44 H 0.109 0.891 45 H 0.116 0.884 46 H 0.203 0.797 47 H 0.114 0.886 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.349 -4.174 24.894 25.278 hybrid contribution 1.584 -0.396 -0.785 1.811 sum 0.235 -4.571 24.110 24.540 Atomic orbital electron populations 1.22157 0.94738 1.03414 1.01655 1.21734 0.95187 0.81403 1.03893 1.48288 1.64131 1.15060 1.06246 1.18670 0.95217 0.91471 0.80582 1.21727 0.97814 1.31716 1.06400 0.92764 1.25889 1.02416 0.94575 0.96540 1.70066 1.37708 1.34333 1.14855 0.85356 0.79019 0.77979 0.78363 1.18935 1.19642 1.20810 1.21334 0.77322 0.86674 0.86534 1.90636 1.47693 1.20436 1.87930 1.21870 1.04199 0.94281 0.87072 1.60045 1.32284 1.37570 1.00518 1.22895 0.97376 0.96642 0.86729 1.23506 1.00553 0.99231 0.93757 1.22568 0.92410 0.95646 0.87916 1.47905 1.36337 1.42552 1.04349 1.22279 0.91127 0.92745 1.02263 1.21578 0.85392 0.83501 0.84500 1.90783 1.37900 1.37134 1.77202 1.21943 0.77460 1.02630 0.77605 1.93028 1.94291 1.92362 1.37825 1.93058 1.35474 1.96489 1.91989 1.24144 0.98781 1.03063 0.94790 0.91999 0.94559 0.88699 0.91206 0.87991 0.96333 0.98721 0.92480 0.90177 0.86251 0.83225 0.86504 0.90485 0.89027 0.87008 0.90760 0.89115 0.88392 0.79670 0.88579 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.77 10.24 71.98 0.74 -3.03 16 2 C 0.10 2.86 5.93 86.38 0.51 3.37 16 3 N -0.61 -24.64 2.46 -826.16 -2.03 -26.67 16 4 C 0.26 14.03 5.16 85.63 0.44 14.47 16 5 C -0.54 -30.58 9.39 25.60 0.24 -30.34 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 7 C 0.00 0.26 5.46 84.65 0.46 0.72 16 8 N -0.93 -56.14 13.29 21.45 0.28 -55.85 16 9 Si 0.97 44.34 29.54 68.60 2.03 46.37 16 10 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 13 C 0.49 19.34 7.71 87.65 0.68 20.02 16 14 O -0.59 -29.33 15.78 -3.04 -0.05 -29.38 16 15 C 0.06 1.41 4.56 85.55 0.39 1.80 16 16 N -0.67 -15.55 6.24 -492.86 -3.08 -18.63 16 17 C 0.07 1.14 4.18 45.44 0.19 1.33 16 18 C -0.13 -1.93 7.42 31.12 0.23 -1.70 16 19 C 0.12 1.71 4.21 45.51 0.19 1.91 16 20 N -0.58 -7.84 3.08 -819.64 -2.53 -10.36 16 21 C 0.06 0.45 8.05 127.77 1.03 1.48 16 22 C 0.47 8.05 7.53 87.66 0.66 8.71 16 23 O -0.55 -14.39 16.10 -3.03 -0.05 -14.44 16 24 C 0.26 2.99 4.63 71.24 0.33 3.32 16 25 F -0.19 -3.49 16.95 44.97 0.76 -2.73 16 26 F -0.19 -2.39 15.96 44.97 0.72 -1.67 16 27 C -0.17 -2.22 7.12 31.12 0.22 -2.00 16 28 H 0.06 1.32 7.22 -2.39 -0.02 1.30 16 29 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 2.16 8.07 -2.39 -0.02 2.14 16 32 H 0.10 2.12 6.44 -2.39 -0.02 2.10 16 33 H 0.02 1.02 8.07 -2.39 -0.02 1.00 16 34 H -0.01 -0.33 7.42 -2.39 -0.02 -0.35 16 35 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 36 H 0.08 1.59 7.40 -2.39 -0.02 1.57 16 37 H 0.12 2.39 7.18 -2.39 -0.02 2.37 16 38 H 0.35 8.75 7.90 -89.70 -0.71 8.04 16 39 H 0.12 1.48 7.87 -2.39 -0.02 1.46 16 40 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 41 H 0.09 1.41 6.92 -2.39 -0.02 1.40 16 42 H 0.11 1.92 7.23 -2.39 -0.02 1.91 16 43 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.09 0.72 6.34 -2.39 -0.02 0.70 16 45 H 0.10 0.28 6.40 -2.39 -0.02 0.27 16 46 H 0.19 0.27 7.66 -2.39 -0.02 0.25 16 47 H 0.10 1.25 6.41 -2.39 -0.02 1.24 16 48 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -82.20 397.64 2.66 -79.55 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.28 Total: 13.75 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: 6.31 Total: 20.06 kcal Atomic # 7 Polarization: -104.17 SS G_CDS: -7.35 Total: -111.52 kcal Atomic # 8 Polarization: -43.72 SS G_CDS: -0.10 Total: -43.82 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 1.48 Total: -4.40 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -82.20 2.66 -79.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486452662.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.734 kcal (2) G-P(sol) polarization free energy of solvation -82.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.96 seconds