Wall clock time and date at job start Wed Apr 1 2020 06:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36936 * 120.00159 * 2 1 4 4 H 1.08002 * 120.00087 * 204.11927 * 3 2 1 5 5 C 1.38811 * 119.99928 * 24.11473 * 3 2 1 6 6 N 1.31616 * 119.99984 * 9.50182 * 5 3 2 7 7 Si 1.86805 * 120.00298 * 189.49972 * 5 3 2 8 8 H 1.48502 * 109.46621 * 59.99852 * 7 5 3 9 9 H 1.48495 * 109.47383 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47076 * 300.00630 * 7 5 3 11 11 C 1.46501 * 120.00149 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47564 * 269.99910 * 11 2 1 13 13 O 1.42904 * 109.46878 * 64.99683 * 12 11 2 14 14 C 1.42907 * 113.99915 * 180.02562 * 13 12 11 15 15 C 1.52995 * 109.46886 * 180.02562 * 14 13 12 16 16 N 1.46494 * 109.47445 * 64.99722 * 15 14 13 17 17 C 1.46499 * 120.00120 * 269.99899 * 16 15 14 18 18 C 1.34783 * 120.00124 * 89.99914 * 16 15 14 19 19 O 1.21559 * 119.99555 * 4.44047 * 18 16 15 20 20 C 1.47761 * 119.99947 * 184.43844 * 18 16 15 21 21 C 1.39633 * 121.07855 * 312.66893 * 20 18 16 22 22 C 1.38333 * 119.37540 * 180.02562 * 21 20 18 23 23 N 1.31720 * 121.55042 * 359.96877 * 22 21 20 24 24 C 1.32113 * 121.94696 * 0.02944 * 23 22 21 25 25 N 1.37942 * 133.80694 * 180.02562 * 24 23 22 26 26 H 0.97006 * 126.36120 * 0.25229 * 25 24 23 27 27 C 1.35993 * 107.28492 * 179.97438 * 25 24 23 28 28 N 1.30280 * 110.05390 * 359.97438 * 27 25 24 29 29 C 1.34648 * 109.67192 * 0.02562 * 28 27 25 30 30 H 1.09003 * 109.47131 * 275.10197 * 1 2 3 31 31 H 1.08995 * 109.46967 * 35.10240 * 1 2 3 32 32 H 1.09002 * 109.47159 * 155.10853 * 1 2 3 33 33 H 0.97002 * 120.00184 * 179.97438 * 6 5 3 34 34 H 1.08999 * 109.47211 * 149.99925 * 11 2 1 35 35 H 1.09004 * 109.47192 * 30.00262 * 11 2 1 36 36 H 1.09009 * 109.47057 * 305.00351 * 12 11 2 37 37 H 1.09000 * 109.47774 * 184.99914 * 12 11 2 38 38 H 1.09000 * 109.46837 * 59.99926 * 14 13 12 39 39 H 1.09006 * 109.46648 * 300.00060 * 14 13 12 40 40 H 1.09004 * 109.47261 * 304.99665 * 15 14 13 41 41 H 1.09003 * 109.47008 * 185.00162 * 15 14 13 42 42 H 1.08997 * 109.47464 * 272.71406 * 17 16 15 43 43 H 1.08999 * 109.47126 * 32.71496 * 17 16 15 44 44 H 1.09011 * 109.47222 * 152.71617 * 17 16 15 45 45 H 1.07997 * 120.30801 * 0.02793 * 21 20 18 46 46 H 1.08004 * 119.22528 * 179.97438 * 22 21 20 47 47 H 1.07995 * 124.96864 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1590 1.2267 -0.3822 5 6 1.5465 2.3356 0.4912 6 7 0.3960 2.2556 1.1254 7 14 2.3676 3.9963 0.2520 8 1 2.5253 4.2660 -1.1998 9 1 1.5277 5.0567 0.8647 10 1 3.7031 3.9863 0.9014 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7098 1.4432 13 8 1.2061 -1.9927 2.0822 14 6 1.3325 -2.4150 3.4416 15 6 -0.0565 -2.6890 4.0217 16 7 -0.6645 -3.8215 3.3189 17 6 -1.4786 -3.5899 2.1232 18 6 -0.4750 -5.0765 3.7724 19 8 0.1322 -5.2630 4.8088 20 6 -1.0054 -6.2256 3.0097 21 6 -2.3173 -6.2297 2.5317 22 6 -2.7776 -7.3243 1.8221 23 7 -2.0067 -8.3657 1.5850 24 6 -0.7572 -8.4219 2.0105 25 7 0.2455 -9.3634 1.9065 26 1 0.1856 -10.2200 1.4551 27 6 1.3358 -8.8653 2.5489 28 7 1.0677 -7.6871 3.0360 29 6 -0.2031 -7.3532 2.7414 30 1 -0.3633 0.0914 1.0236 31 1 -0.3633 0.8407 -0.5909 32 1 -0.3633 -0.9322 -0.4326 33 1 -0.0253 3.0589 1.4690 34 1 3.1499 -1.1386 -0.5133 35 1 1.6085 -2.0286 -0.5130 36 1 2.9643 -0.9122 1.9819 37 1 3.0733 -2.6058 1.4449 38 1 1.8208 -1.6318 4.0215 39 1 1.9302 -3.3256 3.4850 40 1 -0.6829 -1.8056 3.8975 41 1 0.0328 -2.9250 5.0821 42 1 -2.5106 -3.3990 2.4175 43 1 -1.0903 -2.7280 1.5805 44 1 -1.4408 -4.4704 1.4816 45 1 -2.9665 -5.3861 2.7142 46 1 -3.7929 -7.3251 1.4538 47 1 2.2848 -9.3723 2.6417 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489214297.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:12:15 Heat of formation + Delta-G solvation = 51.243902 kcal Electronic energy + Delta-G solvation = -30886.869476 eV Core-core repulsion = 26686.704455 eV Total energy + Delta-G solvation = -4200.165021 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.71971 -40.00019 -38.41715 -37.40473 -35.61640 -34.91779 -34.00377 -31.99296 -31.36213 -30.07252 -29.71518 -27.93690 -26.62249 -25.69489 -24.95637 -23.48254 -23.06816 -22.85170 -21.82277 -20.29276 -20.03981 -18.36797 -18.04956 -17.18925 -16.72687 -16.35131 -16.15371 -15.86808 -15.48983 -15.41106 -15.17516 -14.79997 -14.53333 -14.27367 -13.77784 -13.61808 -13.34384 -13.22915 -13.02306 -12.92519 -12.58802 -12.22920 -12.21973 -11.92348 -11.47235 -11.36609 -11.26097 -11.22102 -10.89863 -10.77892 -10.71849 -10.47722 -10.18931 -10.04091 -9.89211 -9.76776 -9.43378 -9.14754 -8.86102 -8.84855 -8.55634 -8.46233 -6.62295 -5.63260 -3.10521 0.20481 0.84454 2.17187 2.44722 2.66399 2.98434 3.41883 3.47119 3.47864 3.52797 3.74374 4.06488 4.26459 4.35567 4.45114 4.56445 4.66425 4.79969 5.05341 5.23132 5.35945 5.39946 5.46528 5.48590 5.54713 5.60425 5.64681 5.70202 5.79560 5.86661 6.03178 6.05488 6.18551 6.20140 6.26384 6.33092 6.58006 6.62646 6.71685 6.83586 6.95406 7.36299 7.41834 7.48872 7.51804 7.84997 7.93355 7.99039 8.13588 8.49505 9.33797 9.96874 10.48009 11.40508 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018163 B = 0.002444 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.206475 B =11452.331117 C =11558.689394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.596 5.596 3 C -0.256 4.256 4 H 0.065 0.935 5 C 0.004 3.996 6 N -0.904 5.904 7 Si 0.902 3.098 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.285 1.285 11 C 0.154 3.846 12 C 0.045 3.955 13 O -0.367 6.367 14 C 0.048 3.952 15 C 0.122 3.878 16 N -0.595 5.595 17 C 0.071 3.929 18 C 0.559 3.441 19 O -0.520 6.520 20 C -0.022 4.022 21 C -0.152 4.152 22 C 0.135 3.865 23 N -0.472 5.472 24 C 0.235 3.765 25 N -0.589 5.589 26 H 0.430 0.570 27 C 0.279 3.721 28 N -0.474 5.474 29 C 0.047 3.953 30 H 0.034 0.966 31 H 0.034 0.966 32 H -0.008 1.008 33 H 0.251 0.749 34 H 0.056 0.944 35 H 0.041 0.959 36 H 0.047 0.953 37 H 0.022 0.978 38 H 0.054 0.946 39 H 0.041 0.959 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.057 0.943 43 H 0.094 0.906 44 H 0.069 0.931 45 H 0.154 0.846 46 H 0.174 0.826 47 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.258 -23.331 2.060 24.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.319 5.319 3 C -0.386 4.386 4 H 0.082 0.918 5 C -0.195 4.195 6 N -0.549 5.549 7 Si 0.732 3.268 8 H -0.212 1.212 9 H -0.217 1.217 10 H -0.211 1.211 11 C 0.026 3.974 12 C -0.035 4.035 13 O -0.286 6.286 14 C -0.030 4.030 15 C 0.000 4.000 16 N -0.327 5.327 17 C -0.072 4.072 18 C 0.346 3.654 19 O -0.396 6.396 20 C -0.035 4.035 21 C -0.175 4.175 22 C -0.031 4.031 23 N -0.185 5.185 24 C -0.002 4.002 25 N -0.204 5.204 26 H 0.270 0.730 27 C -0.008 4.008 28 N -0.192 5.192 29 C -0.076 4.076 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.011 0.989 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.040 0.960 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.075 0.925 43 H 0.113 0.887 44 H 0.087 0.913 45 H 0.172 0.828 46 H 0.191 0.809 47 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -4.954 -23.391 2.603 24.051 hybrid contribution 0.582 0.660 -0.125 0.889 sum -4.372 -22.731 2.478 23.280 Atomic orbital electron populations 1.20687 0.82288 0.94483 0.99408 1.43848 1.02094 1.00182 1.85751 1.19153 0.98905 0.85979 1.34532 0.91755 1.25050 0.97714 0.98395 0.98328 1.70059 1.17774 1.27132 1.39916 0.86383 0.78601 0.84079 0.77702 1.21173 1.21684 1.21105 1.20875 0.96293 0.88762 0.91451 1.23433 0.85350 0.96703 0.97965 1.87912 1.30209 1.87295 1.23142 1.22768 0.96673 0.98081 0.85521 1.21591 0.93791 0.88210 0.96428 1.47649 1.50719 1.05467 1.28872 1.22131 0.94238 1.03977 0.86829 1.18006 0.79959 0.82474 0.84961 1.90801 1.40651 1.84825 1.23308 1.19550 0.93483 0.93132 0.97309 1.22314 0.94937 1.01083 0.99150 1.22522 0.98714 0.87063 0.94793 1.66202 1.02453 1.28303 1.21578 1.18935 0.89975 0.90697 1.00615 1.42903 1.10366 1.18725 1.48395 0.72988 1.25674 0.92273 0.91185 0.91680 1.70261 1.13772 1.12250 1.22960 1.19178 0.92485 0.94804 1.01090 0.94784 0.94737 0.98939 0.93904 0.92574 0.94016 0.93482 0.96032 0.92795 0.94036 0.88879 0.88729 0.92468 0.88738 0.91264 0.82820 0.80907 0.75623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 4.39 8.61 59.85 0.52 4.90 16 2 N -0.60 -15.22 2.89 -181.12 -0.52 -15.74 16 3 C -0.26 -7.09 9.66 -15.06 -0.15 -7.24 16 4 H 0.06 1.74 7.84 -52.49 -0.41 1.33 16 5 C 0.00 0.10 5.17 -17.43 -0.09 0.01 16 6 N -0.90 -26.34 10.59 55.49 0.59 -25.76 16 7 Si 0.90 22.00 29.56 -169.99 -5.03 16.97 16 8 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 9 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 C 0.15 3.27 6.11 -4.04 -0.02 3.24 16 12 C 0.04 0.90 6.28 37.16 0.23 1.13 16 13 O -0.37 -7.25 8.68 -35.23 -0.31 -7.56 16 14 C 0.05 0.82 6.28 37.16 0.23 1.05 16 15 C 0.12 1.83 5.86 -4.05 -0.02 1.80 16 16 N -0.59 -8.53 2.84 -182.73 -0.52 -9.05 16 17 C 0.07 0.85 8.92 59.85 0.53 1.39 16 18 C 0.56 8.78 7.31 -12.36 -0.09 8.69 16 19 O -0.52 -9.85 16.59 5.31 0.09 -9.76 16 20 C -0.02 -0.29 4.99 -104.45 -0.52 -0.81 16 21 C -0.15 -1.46 7.68 -39.03 -0.30 -1.76 16 22 C 0.14 1.16 11.14 -17.56 -0.20 0.96 16 23 N -0.47 -5.07 10.35 -12.30 -0.13 -5.20 16 24 C 0.23 2.69 8.46 -155.64 -1.32 1.37 16 25 N -0.59 -4.48 6.23 -13.21 -0.08 -4.56 16 26 H 0.43 1.65 8.96 -40.82 -0.37 1.29 16 27 C 0.28 2.27 12.97 -89.68 -1.16 1.10 16 28 N -0.47 -6.49 11.23 -11.88 -0.13 -6.62 16 29 C 0.05 0.66 6.96 -84.62 -0.59 0.07 16 30 H 0.03 0.91 7.33 -51.93 -0.38 0.53 16 31 H 0.03 0.92 7.32 -51.93 -0.38 0.54 16 32 H -0.01 -0.18 7.84 -51.93 -0.41 -0.58 16 33 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.06 1.13 8.04 -51.93 -0.42 0.71 16 35 H 0.04 0.83 7.86 -51.93 -0.41 0.42 16 36 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 41 H 0.09 1.37 7.36 -51.93 -0.38 0.99 16 42 H 0.06 0.53 7.54 -51.93 -0.39 0.14 16 43 H 0.09 1.37 7.07 -51.93 -0.37 1.00 16 44 H 0.07 0.77 5.63 -51.92 -0.29 0.47 16 45 H 0.15 1.09 6.48 -52.49 -0.34 0.75 16 46 H 0.17 0.81 8.06 -52.48 -0.42 0.39 16 47 H 0.23 0.61 8.06 -52.49 -0.42 0.19 16 LS Contribution 391.02 15.07 5.89 5.89 Total: -1.00 -38.15 391.02 -9.73 -47.87 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -6.63 Total: -2.40 kcal Atomic # 6 Polarization: 18.86 SS G_CDS: -2.94 Total: 15.92 kcal Atomic # 7 Polarization: -66.13 SS G_CDS: -0.80 Total: -66.93 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.22 Total: -17.32 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -38.15 -9.73 -47.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489214297.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.116 kcal (2) G-P(sol) polarization free energy of solvation -38.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds