Wall clock time and date at job start Wed Apr 1 2020 06:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36936 * 120.00159 * 2 1 4 4 H 1.08002 * 120.00087 * 204.11927 * 3 2 1 5 5 C 1.38811 * 119.99928 * 24.11473 * 3 2 1 6 6 N 1.31616 * 119.99984 * 9.50182 * 5 3 2 7 7 Si 1.86805 * 120.00298 * 189.49972 * 5 3 2 8 8 H 1.48502 * 109.46621 * 59.99852 * 7 5 3 9 9 H 1.48495 * 109.47383 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47076 * 300.00630 * 7 5 3 11 11 C 1.46501 * 120.00149 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47564 * 269.99910 * 11 2 1 13 13 O 1.42904 * 109.46878 * 64.99683 * 12 11 2 14 14 C 1.42907 * 113.99915 * 180.02562 * 13 12 11 15 15 C 1.52995 * 109.46886 * 180.02562 * 14 13 12 16 16 N 1.46494 * 109.47445 * 64.99722 * 15 14 13 17 17 C 1.46499 * 120.00120 * 269.99899 * 16 15 14 18 18 C 1.34783 * 120.00124 * 89.99914 * 16 15 14 19 19 O 1.21559 * 119.99555 * 4.44047 * 18 16 15 20 20 C 1.47761 * 119.99947 * 184.43844 * 18 16 15 21 21 C 1.39633 * 121.07855 * 312.66893 * 20 18 16 22 22 C 1.38333 * 119.37540 * 180.02562 * 21 20 18 23 23 N 1.31720 * 121.55042 * 359.96877 * 22 21 20 24 24 C 1.32113 * 121.94696 * 0.02944 * 23 22 21 25 25 N 1.37942 * 133.80694 * 180.02562 * 24 23 22 26 26 H 0.97006 * 126.36120 * 0.25229 * 25 24 23 27 27 C 1.35993 * 107.28492 * 179.97438 * 25 24 23 28 28 N 1.30280 * 110.05390 * 359.97438 * 27 25 24 29 29 C 1.34648 * 109.67192 * 0.02562 * 28 27 25 30 30 H 1.09003 * 109.47131 * 275.10197 * 1 2 3 31 31 H 1.08995 * 109.46967 * 35.10240 * 1 2 3 32 32 H 1.09002 * 109.47159 * 155.10853 * 1 2 3 33 33 H 0.97002 * 120.00184 * 179.97438 * 6 5 3 34 34 H 1.08999 * 109.47211 * 149.99925 * 11 2 1 35 35 H 1.09004 * 109.47192 * 30.00262 * 11 2 1 36 36 H 1.09009 * 109.47057 * 305.00351 * 12 11 2 37 37 H 1.09000 * 109.47774 * 184.99914 * 12 11 2 38 38 H 1.09000 * 109.46837 * 59.99926 * 14 13 12 39 39 H 1.09006 * 109.46648 * 300.00060 * 14 13 12 40 40 H 1.09004 * 109.47261 * 304.99665 * 15 14 13 41 41 H 1.09003 * 109.47008 * 185.00162 * 15 14 13 42 42 H 1.08997 * 109.47464 * 272.71406 * 17 16 15 43 43 H 1.08999 * 109.47126 * 32.71496 * 17 16 15 44 44 H 1.09011 * 109.47222 * 152.71617 * 17 16 15 45 45 H 1.07997 * 120.30801 * 0.02793 * 21 20 18 46 46 H 1.08004 * 119.22528 * 179.97438 * 22 21 20 47 47 H 1.07995 * 124.96864 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1590 1.2267 -0.3822 5 6 1.5465 2.3356 0.4912 6 7 0.3960 2.2556 1.1254 7 14 2.3676 3.9963 0.2520 8 1 2.5253 4.2660 -1.1998 9 1 1.5277 5.0567 0.8647 10 1 3.7031 3.9863 0.9014 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7098 1.4432 13 8 1.2061 -1.9927 2.0822 14 6 1.3325 -2.4150 3.4416 15 6 -0.0565 -2.6890 4.0217 16 7 -0.6645 -3.8215 3.3189 17 6 -1.4786 -3.5899 2.1232 18 6 -0.4750 -5.0765 3.7724 19 8 0.1322 -5.2630 4.8088 20 6 -1.0054 -6.2256 3.0097 21 6 -2.3173 -6.2297 2.5317 22 6 -2.7776 -7.3243 1.8221 23 7 -2.0067 -8.3657 1.5850 24 6 -0.7572 -8.4219 2.0105 25 7 0.2455 -9.3634 1.9065 26 1 0.1856 -10.2200 1.4551 27 6 1.3358 -8.8653 2.5489 28 7 1.0677 -7.6871 3.0360 29 6 -0.2031 -7.3532 2.7414 30 1 -0.3633 0.0914 1.0236 31 1 -0.3633 0.8407 -0.5909 32 1 -0.3633 -0.9322 -0.4326 33 1 -0.0253 3.0589 1.4690 34 1 3.1499 -1.1386 -0.5133 35 1 1.6085 -2.0286 -0.5130 36 1 2.9643 -0.9122 1.9819 37 1 3.0733 -2.6058 1.4449 38 1 1.8208 -1.6318 4.0215 39 1 1.9302 -3.3256 3.4850 40 1 -0.6829 -1.8056 3.8975 41 1 0.0328 -2.9250 5.0821 42 1 -2.5106 -3.3990 2.4175 43 1 -1.0903 -2.7280 1.5805 44 1 -1.4408 -4.4704 1.4816 45 1 -2.9665 -5.3861 2.7142 46 1 -3.7929 -7.3251 1.4538 47 1 2.2848 -9.3723 2.6417 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489214297.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:12:12 Heat of formation + Delta-G solvation = 25.239945 kcal Electronic energy + Delta-G solvation = -30887.997092 eV Core-core repulsion = 26686.704455 eV Total energy + Delta-G solvation = -4201.292637 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -43.45313 -41.09903 -39.27057 -38.90929 -37.23650 -36.42333 -34.82051 -33.47936 -32.71516 -31.08430 -30.80330 -29.59056 -27.77691 -27.67491 -25.92042 -24.79971 -24.21671 -24.05043 -22.71041 -22.12970 -21.00120 -19.30435 -18.84199 -18.70994 -18.09667 -17.55320 -17.34014 -17.09437 -16.80373 -16.47903 -16.43011 -16.15793 -15.77290 -15.32621 -15.13260 -15.09244 -14.85229 -14.41435 -14.25191 -13.99102 -13.79713 -13.55547 -13.46481 -13.16602 -13.01120 -12.91327 -12.67225 -12.61471 -12.48025 -12.32654 -12.14929 -12.00540 -11.99158 -11.78209 -11.70829 -11.31137 -10.59076 -10.43353 -10.26173 -9.93333 -9.75232 -9.58802 -8.68641 -7.75197 -5.24702 -0.59048 0.10380 1.44570 1.48278 1.49860 1.56314 1.61644 1.78408 1.94487 2.54144 2.70950 2.88384 3.05735 3.30381 3.37027 3.53367 3.72035 3.77704 3.99366 4.08998 4.11524 4.21127 4.27425 4.34839 4.40083 4.50351 4.52456 4.59398 4.63220 4.65913 4.70200 4.80955 4.84051 4.93239 4.99689 5.02636 5.07909 5.15692 5.41780 5.43665 5.50006 5.69565 5.90337 6.18575 6.24875 6.38980 6.43117 6.70122 6.80020 6.99032 7.22963 7.94727 8.40274 9.26815 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018163 B = 0.002444 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.206475 B =11452.331117 C =11558.689394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.195 3.805 2 N -0.612 5.612 3 C -0.266 4.266 4 H 0.068 0.932 5 C -0.050 4.050 6 N -0.931 5.931 7 Si 0.965 3.035 8 H -0.279 1.279 9 H -0.295 1.295 10 H -0.279 1.279 11 C 0.152 3.848 12 C 0.053 3.947 13 O -0.378 6.378 14 C 0.052 3.948 15 C 0.127 3.873 16 N -0.594 5.594 17 C 0.073 3.927 18 C 0.559 3.441 19 O -0.565 6.565 20 C -0.059 4.059 21 C -0.135 4.135 22 C 0.138 3.862 23 N -0.478 5.478 24 C 0.220 3.780 25 N -0.573 5.573 26 H 0.448 0.552 27 C 0.301 3.699 28 N -0.540 5.540 29 C 0.017 3.983 30 H 0.009 0.991 31 H 0.007 0.993 32 H 0.021 0.979 33 H 0.246 0.754 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.022 0.978 37 H 0.046 0.954 38 H 0.050 0.950 39 H 0.033 0.967 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.069 0.931 44 H 0.080 0.920 45 H 0.180 0.820 46 H 0.217 0.783 47 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.803 -24.962 0.748 25.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.335 5.335 3 C -0.397 4.397 4 H 0.086 0.914 5 C -0.245 4.245 6 N -0.577 5.577 7 Si 0.794 3.206 8 H -0.205 1.205 9 H -0.221 1.221 10 H -0.205 1.205 11 C 0.026 3.974 12 C -0.027 4.027 13 O -0.297 6.297 14 C -0.026 4.026 15 C 0.004 3.996 16 N -0.325 5.325 17 C -0.069 4.069 18 C 0.347 3.653 19 O -0.445 6.445 20 C -0.072 4.072 21 C -0.158 4.158 22 C -0.028 4.028 23 N -0.192 5.192 24 C -0.018 4.018 25 N -0.189 5.189 26 H 0.292 0.708 27 C 0.014 3.986 28 N -0.260 5.260 29 C -0.106 4.106 30 H 0.027 0.973 31 H 0.026 0.974 32 H 0.040 0.960 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.040 0.960 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.197 0.803 46 H 0.233 0.767 47 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -5.494 -25.075 1.242 25.700 hybrid contribution 0.766 1.044 0.246 1.318 sum -4.729 -24.031 1.488 24.537 Atomic orbital electron populations 1.20380 0.82357 0.94695 0.97570 1.44066 1.02396 1.01135 1.85879 1.19491 0.99132 0.87096 1.33938 0.91385 1.25783 0.98485 1.01656 0.98600 1.70230 1.19020 1.27480 1.41010 0.85383 0.77632 0.79896 0.77716 1.20463 1.22116 1.20500 1.21029 0.96714 0.87390 0.92305 1.23223 0.85666 0.96893 0.96871 1.87896 1.30141 1.87357 1.24324 1.22807 0.98025 0.97387 0.84407 1.21486 0.92733 0.88807 0.96576 1.47724 1.50566 1.04972 1.29219 1.22233 0.95333 1.03336 0.85982 1.18421 0.79154 0.83190 0.84512 1.90754 1.42856 1.85509 1.25341 1.19598 0.95349 0.92719 0.99505 1.22638 0.93495 1.02098 0.97530 1.23268 1.00019 0.85894 0.93601 1.66341 1.02213 1.29065 1.21550 1.19165 0.90675 0.91079 1.00846 1.42918 1.09327 1.18852 1.47817 0.70839 1.26609 0.93372 0.89700 0.88879 1.70210 1.14586 1.15201 1.26006 1.19510 0.93122 0.95786 1.02188 0.97262 0.97419 0.96025 0.94497 0.91390 0.92320 0.95987 0.93576 0.93139 0.94849 0.88507 0.88454 0.89180 0.91189 0.90170 0.80321 0.76650 0.70859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.74 8.61 127.77 1.10 10.84 16 2 N -0.61 -31.05 2.89 -726.94 -2.10 -33.15 16 3 C -0.27 -14.72 9.66 84.03 0.81 -13.91 16 4 H 0.07 3.64 7.84 -2.91 -0.02 3.61 16 5 C -0.05 -2.81 5.17 84.86 0.44 -2.37 16 6 N -0.93 -55.10 10.59 21.65 0.23 -54.87 16 7 Si 0.97 45.38 29.56 68.60 2.03 47.41 16 8 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 9 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 C 0.15 6.28 6.11 86.38 0.53 6.81 16 12 C 0.05 2.09 6.28 71.98 0.45 2.55 16 13 O -0.38 -15.02 8.68 -148.98 -1.29 -16.31 16 14 C 0.05 1.82 6.28 71.98 0.45 2.27 16 15 C 0.13 3.88 5.86 86.38 0.51 4.38 16 16 N -0.59 -17.02 2.84 -850.29 -2.41 -19.43 16 17 C 0.07 1.66 8.92 127.77 1.14 2.80 16 18 C 0.56 17.87 7.31 86.76 0.63 18.51 16 19 O -0.57 -22.38 16.59 -3.90 -0.06 -22.45 16 20 C -0.06 -1.57 4.99 -19.75 -0.10 -1.67 16 21 C -0.14 -2.33 7.68 22.63 0.17 -2.15 16 22 C 0.14 1.98 11.14 84.73 0.94 2.92 16 23 N -0.48 -9.25 10.35 -192.84 -2.00 -11.25 16 24 C 0.22 4.75 8.46 133.93 1.13 5.88 16 25 N -0.57 -7.66 6.23 -195.71 -1.22 -8.88 16 26 H 0.45 2.36 8.96 -92.70 -0.83 1.53 16 27 C 0.30 4.42 12.97 180.02 2.34 6.75 16 28 N -0.54 -14.84 11.23 -191.51 -2.15 -16.99 16 29 C 0.02 0.46 6.96 40.02 0.28 0.74 16 30 H 0.01 0.50 7.33 -2.39 -0.02 0.48 16 31 H 0.01 0.39 7.32 -2.39 -0.02 0.37 16 32 H 0.02 0.93 7.84 -2.39 -0.02 0.91 16 33 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 34 H 0.07 2.63 8.04 -2.39 -0.02 2.61 16 35 H 0.06 2.22 7.86 -2.38 -0.02 2.20 16 36 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.10 2.88 8.07 -2.38 -0.02 2.86 16 41 H 0.10 2.92 7.36 -2.39 -0.02 2.90 16 42 H 0.09 1.45 7.54 -2.39 -0.02 1.43 16 43 H 0.07 1.98 7.07 -2.39 -0.02 1.97 16 44 H 0.08 1.65 5.63 -2.38 -0.01 1.64 16 45 H 0.18 1.98 6.48 -2.91 -0.02 1.96 16 46 H 0.22 1.06 8.06 -2.91 -0.02 1.03 16 47 H 0.28 0.66 8.06 -2.91 -0.02 0.64 16 Total: -1.00 -85.77 391.02 2.03 -83.75 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 0.18 Total: 7.82 kcal Atomic # 6 Polarization: 33.53 SS G_CDS: 10.83 Total: 44.36 kcal Atomic # 7 Polarization: -134.92 SS G_CDS: -9.65 Total: -144.57 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -1.36 Total: -38.76 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -85.77 2.03 -83.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489214297.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.987 kcal (2) G-P(sol) polarization free energy of solvation -85.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds