Wall clock time and date at job start Wed Apr 1 2020 05:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46505 * 109.47022 * 2 1 4 4 C 1.46496 * 119.99896 * 269.99674 * 3 2 1 5 5 C 1.50699 * 109.47398 * 270.00022 * 4 3 2 6 6 H 1.08003 * 120.00015 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00048 * 180.02562 * 5 4 3 8 8 N 1.31522 * 119.99916 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00086 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47340 * 89.99836 * 9 7 5 11 11 H 1.48500 * 109.47003 * 210.00191 * 9 7 5 12 12 H 1.48498 * 109.47056 * 329.99743 * 9 7 5 13 13 C 1.34777 * 119.99832 * 90.00138 * 3 2 1 14 14 O 1.21278 * 119.99854 * 180.02562 * 13 3 2 15 15 C 1.50703 * 120.00161 * 359.97438 * 13 3 2 16 16 N 1.46899 * 109.47107 * 180.02562 * 15 13 3 17 17 C 1.46904 * 111.00029 * 179.97438 * 16 15 13 18 18 H 1.08999 * 112.85001 * 336.20073 * 17 16 15 19 19 C 1.53778 * 113.61042 * 107.50376 * 17 16 15 20 20 C 1.53778 * 87.07994 * 139.97995 * 19 17 16 21 21 H 1.09001 * 113.69014 * 89.12812 * 20 19 17 22 22 N 1.46494 * 113.61789 * 220.01527 * 20 19 17 23 23 C 1.34777 * 120.00488 * 252.49834 * 22 20 19 24 24 O 1.21281 * 119.99948 * 0.02562 * 23 22 20 25 25 C 1.50699 * 120.00289 * 179.97438 * 23 22 20 26 26 C 1.53001 * 109.46995 * 155.00186 * 25 23 22 27 27 F 1.39892 * 109.47682 * 275.00438 * 25 23 22 28 28 F 1.39899 * 109.46946 * 35.00726 * 25 23 22 29 29 C 1.53780 * 113.61241 * 204.99996 * 17 16 15 30 30 H 1.09005 * 109.47443 * 299.99879 * 1 2 3 31 31 H 1.09000 * 109.47099 * 60.00377 * 1 2 3 32 32 H 1.09006 * 109.47010 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47614 * 239.99880 * 2 1 3 34 34 H 1.09000 * 109.47099 * 119.99622 * 2 1 3 35 35 H 1.09000 * 109.47082 * 30.00019 * 4 3 2 36 36 H 1.09004 * 109.46754 * 150.00286 * 4 3 2 37 37 H 0.96999 * 119.99664 * 180.02562 * 8 7 5 38 38 H 1.09002 * 109.47152 * 60.00245 * 15 13 3 39 39 H 1.09001 * 109.46980 * 300.00345 * 15 13 3 40 40 H 1.00908 * 110.99847 * 56.05051 * 16 15 13 41 41 H 1.08996 * 113.61443 * 254.52656 * 19 17 16 42 42 H 1.09007 * 113.61378 * 25.43518 * 19 17 16 43 43 H 0.97001 * 119.99817 * 72.49761 * 22 20 19 44 44 H 1.08996 * 109.47203 * 60.00556 * 26 25 23 45 45 H 1.08998 * 109.47161 * 180.02562 * 26 25 23 46 46 H 1.09000 * 109.47359 * 300.00136 * 26 25 23 47 47 H 1.08993 * 113.62010 * 334.57153 * 29 17 16 48 48 H 1.09007 * 113.61180 * 105.47732 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1493 2.3905 -2.8774 8 7 5.3917 2.1843 -3.2567 9 14 3.0135 3.4371 -3.9280 10 1 3.1172 4.8570 -3.5058 11 1 3.4065 3.3149 -5.3548 12 1 1.6136 2.9713 -3.7586 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9912 1.3063 2.4723 16 7 2.3090 2.2065 3.5889 17 6 2.0744 1.5466 4.8803 18 1 1.3555 0.7300 4.8139 19 6 3.3671 1.1729 5.6247 20 6 2.6601 1.6200 6.9150 21 1 2.1018 0.8235 7.4071 22 7 3.5293 2.3576 7.8351 23 6 3.9534 1.7754 8.9743 24 8 3.6158 0.6407 9.2375 25 6 4.8480 2.5340 9.9205 26 6 4.6872 1.9727 11.3347 27 9 6.1794 2.3981 9.5134 28 9 4.4938 3.8874 9.9129 29 6 1.7889 2.5270 6.0301 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.5817 1.6877 -2.0284 36 1 2.0955 3.1411 -1.1383 37 1 5.7179 2.5754 -4.0823 38 1 2.6211 0.4186 2.5303 39 1 0.9431 1.0125 2.5299 40 1 1.7838 3.0655 3.5215 41 1 3.5938 0.1071 5.5979 42 1 4.2209 1.7952 5.3565 43 1 3.7996 3.2650 7.6244 44 1 4.9631 0.9183 11.3407 45 1 5.3339 2.5217 12.0192 46 1 3.6498 2.0787 11.6519 47 1 2.2111 3.5195 5.8728 48 1 0.7414 2.5543 6.3306 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490989256.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:13 Heat of formation + Delta-G solvation = -140.604199 kcal Electronic energy + Delta-G solvation = -30403.483150 eV Core-core repulsion = 25744.309784 eV Total energy + Delta-G solvation = -4659.173365 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.67096 -47.66701 -40.59822 -39.37695 -38.68870 -35.51227 -34.88665 -33.12433 -32.59044 -31.99422 -30.36424 -28.40235 -26.60433 -26.08827 -25.41000 -23.01291 -22.98364 -21.88342 -21.18266 -20.29018 -18.91725 -18.31030 -18.24744 -17.43826 -16.95151 -16.72331 -16.33012 -16.01714 -15.65647 -15.54822 -15.28053 -14.92427 -14.49251 -14.35983 -14.06683 -13.98197 -13.91044 -13.71504 -13.51512 -13.13969 -13.01939 -12.95110 -12.73833 -12.71365 -12.49573 -12.45690 -12.35228 -12.01653 -11.85016 -11.56199 -11.43658 -11.29566 -10.97739 -10.89034 -10.71865 -10.50344 -10.41162 -10.15874 -9.58163 -9.53195 -9.01298 -8.58080 -8.44822 -7.72446 -6.07553 -4.06152 1.64617 2.14376 3.22459 3.28902 3.32853 3.34847 3.36498 3.45019 3.65274 3.94496 4.01904 4.13540 4.20251 4.30621 4.39972 4.57962 4.64748 4.89065 4.98077 5.02130 5.11124 5.19770 5.25826 5.30256 5.33039 5.35436 5.46114 5.51839 5.54893 5.59790 5.67576 5.74714 5.78946 5.93418 6.10032 6.11841 6.35282 6.66364 6.75716 6.88985 6.98457 7.31112 7.35378 7.36188 7.62121 8.25421 8.48183 8.94395 9.00196 9.52598 11.05876 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.017528 B = 0.001867 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.093839 B =14995.205078 C =15818.822022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.594 5.594 4 C 0.217 3.783 5 C -0.527 4.527 6 H 0.074 0.926 7 C 0.071 3.929 8 N -0.897 5.897 9 Si 0.877 3.123 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.506 3.494 14 O -0.528 6.528 15 C 0.042 3.958 16 N -0.657 5.657 17 C 0.064 3.936 18 H 0.079 0.921 19 C -0.137 4.137 20 C 0.117 3.883 21 H 0.119 0.881 22 N -0.696 5.696 23 C 0.487 3.513 24 O -0.504 6.504 25 C 0.280 3.720 26 C -0.183 4.183 27 F -0.180 7.180 28 F -0.189 7.189 29 C -0.147 4.147 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.029 0.971 36 H 0.035 0.965 37 H 0.264 0.736 38 H 0.097 0.903 39 H 0.054 0.946 40 H 0.352 0.648 41 H 0.073 0.927 42 H 0.098 0.902 43 H 0.410 0.590 44 H 0.101 0.899 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.098 0.902 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.319 -2.854 26.590 28.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.327 5.327 4 C 0.097 3.903 5 C -0.566 4.566 6 H 0.092 0.908 7 C -0.131 4.131 8 N -0.536 5.536 9 Si 0.704 3.296 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.192 1.192 13 C 0.292 3.708 14 O -0.404 6.404 15 C -0.091 4.091 16 N -0.290 5.290 17 C -0.047 4.047 18 H 0.097 0.903 19 C -0.177 4.177 20 C 0.013 3.987 21 H 0.137 0.863 22 N -0.347 5.347 23 C 0.268 3.732 24 O -0.379 6.379 25 C 0.241 3.759 26 C -0.240 4.240 27 F -0.161 7.161 28 F -0.170 7.170 29 C -0.186 4.186 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.115 0.885 39 H 0.072 0.928 40 H 0.173 0.827 41 H 0.091 0.909 42 H 0.117 0.883 43 H 0.246 0.754 44 H 0.120 0.880 45 H 0.110 0.890 46 H 0.112 0.888 47 H 0.117 0.883 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.534 -3.125 26.564 28.076 hybrid contribution -1.066 1.027 -0.905 1.735 sum -9.601 -2.097 25.659 27.477 Atomic orbital electron populations 1.22234 0.96857 1.01558 1.02110 1.21435 0.93278 0.83958 1.03151 1.47939 1.64346 1.13371 1.07016 1.19627 0.97302 0.93316 0.80072 1.21331 0.95342 1.32833 1.07072 0.90757 1.24871 0.95007 0.95848 0.97392 1.69903 1.15093 1.44996 1.23573 0.86843 0.81402 0.81618 0.79752 1.19940 1.21103 1.19150 1.20214 0.78570 0.87100 0.84892 1.90673 1.44729 1.18083 1.86934 1.21957 0.99919 0.96889 0.90290 1.60210 1.62470 1.06827 0.99466 1.22785 0.97110 0.96706 0.88095 0.90347 1.23606 0.98628 1.02356 0.93089 1.22571 0.92219 0.95795 0.88154 0.86289 1.46005 1.49642 1.18760 1.20258 1.20771 0.82024 0.87659 0.82726 1.90783 1.55757 1.16952 1.74381 1.21382 0.78498 0.78575 0.97488 1.22642 1.05845 1.04530 0.91020 1.93112 1.35276 1.95565 1.92129 1.93070 1.91640 1.34759 1.97546 1.23642 1.00386 0.99445 0.95132 0.93167 0.92211 0.91974 0.89680 0.91462 0.95345 0.94683 0.92591 0.88471 0.92829 0.82737 0.90859 0.88318 0.75367 0.87980 0.89028 0.88810 0.88337 0.90379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 10.24 37.15 0.38 -1.64 16 2 C 0.11 1.58 5.93 -4.04 -0.02 1.56 16 3 N -0.59 -11.85 2.46 -175.06 -0.43 -12.28 16 4 C 0.22 5.27 4.23 -5.20 -0.02 5.24 16 5 C -0.53 -15.17 9.94 -34.44 -0.34 -15.51 16 6 H 0.07 2.36 8.06 -52.48 -0.42 1.93 16 7 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 8 N -0.90 -27.81 13.96 55.43 0.77 -27.03 16 9 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 10 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 13 C 0.51 9.95 7.71 -10.98 -0.08 9.87 16 14 O -0.53 -12.73 15.78 5.56 0.09 -12.64 16 15 C 0.04 0.57 4.56 -4.98 -0.02 0.55 16 16 N -0.66 -8.41 6.18 -107.13 -0.66 -9.07 16 17 C 0.06 0.59 4.14 -66.90 -0.28 0.31 16 18 H 0.08 0.63 7.87 -51.93 -0.41 0.22 16 19 C -0.14 -1.32 7.68 -25.92 -0.20 -1.52 16 20 C 0.12 0.95 4.24 -67.12 -0.28 0.66 16 21 H 0.12 0.99 7.46 -51.93 -0.39 0.61 16 22 N -0.70 -5.62 5.29 -53.02 -0.28 -5.90 16 23 C 0.49 4.55 7.23 -10.99 -0.08 4.47 16 24 O -0.50 -5.94 15.70 5.56 0.09 -5.86 16 25 C 0.28 2.22 2.47 -27.88 -0.07 2.15 16 26 C -0.18 -1.02 8.92 37.16 0.33 -0.69 16 27 F -0.18 -1.71 17.05 2.25 0.04 -1.68 16 28 F -0.19 -1.49 16.51 2.25 0.04 -1.45 16 29 C -0.15 -1.07 7.40 -25.92 -0.19 -1.26 16 30 H 0.05 0.56 7.22 -51.93 -0.37 0.18 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 34 H 0.07 0.84 6.44 -51.93 -0.33 0.50 16 35 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 36 H 0.04 0.91 6.85 -51.93 -0.36 0.55 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.10 1.28 7.40 -51.93 -0.38 0.89 16 39 H 0.05 0.60 7.17 -51.93 -0.37 0.23 16 40 H 0.35 4.54 8.24 -39.29 -0.32 4.21 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.41 2.76 8.28 -40.82 -0.34 2.42 16 44 H 0.10 0.59 7.87 -51.93 -0.41 0.18 16 45 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.10 0.73 8.12 -51.93 -0.42 0.31 16 48 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 402.79 15.07 6.07 6.07 Total: -1.00 -35.75 402.79 -7.38 -43.12 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -7.45 Total: 3.59 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -0.98 Total: 6.19 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.60 Total: -54.29 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: 0.17 Total: -18.49 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.08 Total: -3.13 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.75 -7.38 -43.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490989256.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.481 kcal (2) G-P(sol) polarization free energy of solvation -35.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds