Wall clock time and date at job start Wed Apr 1 2020 05:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46505 * 109.47022 * 2 1 4 4 C 1.46496 * 119.99896 * 269.99674 * 3 2 1 5 5 C 1.50699 * 109.47398 * 270.00022 * 4 3 2 6 6 H 1.08003 * 120.00015 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00048 * 180.02562 * 5 4 3 8 8 N 1.31522 * 119.99916 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00086 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47340 * 89.99836 * 9 7 5 11 11 H 1.48500 * 109.47003 * 210.00191 * 9 7 5 12 12 H 1.48498 * 109.47056 * 329.99743 * 9 7 5 13 13 C 1.34777 * 119.99832 * 90.00138 * 3 2 1 14 14 O 1.21278 * 119.99854 * 180.02562 * 13 3 2 15 15 C 1.50703 * 120.00161 * 359.97438 * 13 3 2 16 16 N 1.46899 * 109.47107 * 180.02562 * 15 13 3 17 17 C 1.46904 * 111.00029 * 179.97438 * 16 15 13 18 18 H 1.08999 * 112.85001 * 336.20073 * 17 16 15 19 19 C 1.53778 * 113.61042 * 107.50376 * 17 16 15 20 20 C 1.53778 * 87.07994 * 139.97995 * 19 17 16 21 21 H 1.09001 * 113.69014 * 89.12812 * 20 19 17 22 22 N 1.46494 * 113.61789 * 220.01527 * 20 19 17 23 23 C 1.34777 * 120.00488 * 252.49834 * 22 20 19 24 24 O 1.21281 * 119.99948 * 0.02562 * 23 22 20 25 25 C 1.50699 * 120.00289 * 179.97438 * 23 22 20 26 26 C 1.53001 * 109.46995 * 155.00186 * 25 23 22 27 27 F 1.39892 * 109.47682 * 275.00438 * 25 23 22 28 28 F 1.39899 * 109.46946 * 35.00726 * 25 23 22 29 29 C 1.53780 * 113.61241 * 204.99996 * 17 16 15 30 30 H 1.09005 * 109.47443 * 299.99879 * 1 2 3 31 31 H 1.09000 * 109.47099 * 60.00377 * 1 2 3 32 32 H 1.09006 * 109.47010 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47614 * 239.99880 * 2 1 3 34 34 H 1.09000 * 109.47099 * 119.99622 * 2 1 3 35 35 H 1.09000 * 109.47082 * 30.00019 * 4 3 2 36 36 H 1.09004 * 109.46754 * 150.00286 * 4 3 2 37 37 H 0.96999 * 119.99664 * 180.02562 * 8 7 5 38 38 H 1.09002 * 109.47152 * 60.00245 * 15 13 3 39 39 H 1.09001 * 109.46980 * 300.00345 * 15 13 3 40 40 H 1.00908 * 110.99847 * 56.05051 * 16 15 13 41 41 H 1.08996 * 113.61443 * 254.52656 * 19 17 16 42 42 H 1.09007 * 113.61378 * 25.43518 * 19 17 16 43 43 H 0.97001 * 119.99817 * 72.49761 * 22 20 19 44 44 H 1.08996 * 109.47203 * 60.00556 * 26 25 23 45 45 H 1.08998 * 109.47161 * 180.02562 * 26 25 23 46 46 H 1.09000 * 109.47359 * 300.00136 * 26 25 23 47 47 H 1.08993 * 113.62010 * 334.57153 * 29 17 16 48 48 H 1.09007 * 113.61180 * 105.47732 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1493 2.3905 -2.8774 8 7 5.3917 2.1843 -3.2567 9 14 3.0135 3.4371 -3.9280 10 1 3.1172 4.8570 -3.5058 11 1 3.4065 3.3149 -5.3548 12 1 1.6136 2.9713 -3.7586 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9912 1.3063 2.4723 16 7 2.3090 2.2065 3.5889 17 6 2.0744 1.5466 4.8803 18 1 1.3555 0.7300 4.8139 19 6 3.3671 1.1729 5.6247 20 6 2.6601 1.6200 6.9150 21 1 2.1018 0.8235 7.4071 22 7 3.5293 2.3576 7.8351 23 6 3.9534 1.7754 8.9743 24 8 3.6158 0.6407 9.2375 25 6 4.8480 2.5340 9.9205 26 6 4.6872 1.9727 11.3347 27 9 6.1794 2.3981 9.5134 28 9 4.4938 3.8874 9.9129 29 6 1.7889 2.5270 6.0301 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.5817 1.6877 -2.0284 36 1 2.0955 3.1411 -1.1383 37 1 5.7179 2.5754 -4.0823 38 1 2.6211 0.4186 2.5303 39 1 0.9431 1.0125 2.5299 40 1 1.7838 3.0655 3.5215 41 1 3.5938 0.1071 5.5979 42 1 4.2209 1.7952 5.3565 43 1 3.7996 3.2650 7.6244 44 1 4.9631 0.9183 11.3407 45 1 5.3339 2.5217 12.0192 46 1 3.6498 2.0787 11.6519 47 1 2.2111 3.5195 5.8728 48 1 0.7414 2.5543 6.3306 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490989256.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:10 Heat of formation + Delta-G solvation = -167.759580 kcal Electronic energy + Delta-G solvation = -30404.660696 eV Core-core repulsion = 25744.309784 eV Total energy + Delta-G solvation = -4660.350911 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -50.33118 -48.33482 -41.34965 -40.74069 -39.58575 -37.01236 -35.85244 -34.85398 -33.87311 -32.54686 -31.85070 -29.97352 -27.79311 -26.77735 -26.29689 -24.43111 -24.00453 -23.25895 -21.89233 -21.03141 -19.91517 -19.45693 -19.10427 -18.91620 -18.24961 -17.78521 -17.43409 -17.12356 -16.69137 -16.41156 -16.32843 -16.02315 -15.70004 -15.62021 -15.15732 -14.77916 -14.66418 -14.65676 -14.64715 -14.47927 -14.21427 -13.86684 -13.57620 -13.55188 -13.42810 -13.38283 -13.28562 -13.21378 -13.09562 -13.08172 -12.54060 -12.41823 -12.33854 -12.05177 -12.01922 -11.86152 -11.74186 -11.60509 -11.14836 -10.83385 -10.58582 -10.28484 -9.45001 -9.31400 -8.34012 -6.38957 0.91442 1.31606 1.36080 1.44360 1.48753 1.82959 2.26211 2.30612 2.60168 2.87999 3.00094 3.24507 3.37448 3.41396 3.51883 3.53399 3.71534 3.89664 3.97202 4.11459 4.27887 4.43616 4.45490 4.48712 4.51277 4.56868 4.64247 4.72791 4.79583 4.80607 4.87773 4.91860 4.96198 5.01150 5.01420 5.02491 5.05878 5.36400 5.39417 5.47464 5.66515 6.00538 6.11101 6.25278 6.36912 6.62629 6.67702 6.76224 7.21955 7.47085 8.83068 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.017528 B = 0.001867 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.093839 B =14995.205078 C =15818.822022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 N -0.602 5.602 4 C 0.227 3.773 5 C -0.534 4.534 6 H 0.026 0.974 7 C 0.007 3.993 8 N -0.946 5.946 9 Si 0.950 3.050 10 H -0.277 1.277 11 H -0.275 1.275 12 H -0.237 1.237 13 C 0.494 3.506 14 O -0.584 6.584 15 C 0.058 3.942 16 N -0.679 5.679 17 C 0.066 3.934 18 H 0.102 0.898 19 C -0.144 4.144 20 C 0.122 3.878 21 H 0.122 0.878 22 N -0.691 5.691 23 C 0.485 3.515 24 O -0.531 6.531 25 C 0.280 3.720 26 C -0.180 4.180 27 F -0.191 7.191 28 F -0.188 7.188 29 C -0.133 4.133 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.017 0.983 37 H 0.268 0.732 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.351 0.649 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.416 0.584 44 H 0.098 0.902 45 H 0.108 0.892 46 H 0.104 0.896 47 H 0.096 0.904 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.339 -3.272 27.761 30.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.025 4.025 3 N -0.334 5.334 4 C 0.104 3.896 5 C -0.573 4.573 6 H 0.044 0.956 7 C -0.191 4.191 8 N -0.586 5.586 9 Si 0.773 3.227 10 H -0.202 1.202 11 H -0.200 1.200 12 H -0.160 1.160 13 C 0.283 3.717 14 O -0.464 6.464 15 C -0.074 4.074 16 N -0.312 5.312 17 C -0.044 4.044 18 H 0.119 0.881 19 C -0.184 4.184 20 C 0.018 3.982 21 H 0.140 0.860 22 N -0.342 5.342 23 C 0.266 3.734 24 O -0.408 6.408 25 C 0.240 3.760 26 C -0.238 4.238 27 F -0.172 7.172 28 F -0.169 7.169 29 C -0.171 4.171 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.065 0.935 36 H 0.035 0.965 37 H 0.077 0.923 38 H 0.124 0.876 39 H 0.110 0.890 40 H 0.171 0.829 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.254 0.746 44 H 0.117 0.883 45 H 0.127 0.873 46 H 0.123 0.877 47 H 0.114 0.886 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.584 -3.583 27.755 30.287 hybrid contribution -0.013 1.102 -1.225 1.648 sum -11.596 -2.480 26.529 29.059 Atomic orbital electron populations 1.22148 0.93818 1.03615 1.02115 1.21766 0.95684 0.81157 1.03851 1.48073 1.64333 1.15193 1.05811 1.19256 0.94591 0.93006 0.82751 1.21578 0.97180 1.31943 1.06608 0.95575 1.25903 0.96787 0.97305 0.99060 1.70064 1.17443 1.46621 1.24507 0.85679 0.80416 0.78927 0.77690 1.20223 1.20036 1.16049 1.21334 0.77046 0.86735 0.86572 1.90635 1.47148 1.20718 1.87899 1.21862 1.02267 0.96148 0.87110 1.60153 1.63328 1.07118 1.00583 1.22888 0.97129 0.97695 0.86674 0.88077 1.23600 0.98467 1.01795 0.94508 1.22525 0.91997 0.96136 0.87573 0.86017 1.46041 1.49231 1.19013 1.19882 1.21030 0.81909 0.87425 0.83005 1.90766 1.56900 1.18030 1.75064 1.21514 0.77576 0.78520 0.98344 1.22695 1.07008 1.04405 0.89673 1.93090 1.36120 1.95634 1.92373 1.93071 1.91568 1.34704 1.97585 1.23555 1.01422 0.98669 0.93493 0.91793 0.93587 0.88827 0.91248 0.88651 0.93472 0.96464 0.92326 0.87598 0.88985 0.82900 0.91154 0.90448 0.74640 0.88286 0.87297 0.87738 0.88579 0.88189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 10.24 71.98 0.74 -2.48 16 2 C 0.10 2.73 5.93 86.38 0.51 3.24 16 3 N -0.60 -23.77 2.46 -826.17 -2.03 -25.80 16 4 C 0.23 11.02 4.23 85.63 0.36 11.39 16 5 C -0.53 -31.84 9.94 25.60 0.25 -31.58 16 6 H 0.03 1.75 8.06 -2.91 -0.02 1.72 16 7 C 0.01 0.43 5.47 84.65 0.46 0.89 16 8 N -0.95 -60.65 13.96 21.45 0.30 -60.35 16 9 Si 0.95 44.86 27.47 68.60 1.88 46.74 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 12 H -0.24 -9.99 6.54 99.48 0.65 -9.34 16 13 C 0.49 19.31 7.71 87.66 0.68 19.99 16 14 O -0.58 -28.86 15.78 -3.02 -0.05 -28.91 16 15 C 0.06 1.47 4.56 85.56 0.39 1.86 16 16 N -0.68 -16.44 6.18 -492.84 -3.05 -19.48 16 17 C 0.07 1.06 4.14 45.44 0.19 1.25 16 18 H 0.10 1.22 7.87 -2.39 -0.02 1.20 16 19 C -0.14 -2.64 7.68 31.12 0.24 -2.40 16 20 C 0.12 1.78 4.24 45.52 0.19 1.98 16 21 H 0.12 1.79 7.46 -2.39 -0.02 1.78 16 22 N -0.69 -10.53 5.29 -440.05 -2.33 -12.86 16 23 C 0.48 8.71 7.23 87.66 0.63 9.34 16 24 O -0.53 -12.17 15.70 -3.03 -0.05 -12.21 16 25 C 0.28 4.21 2.47 29.85 0.07 4.29 16 26 C -0.18 -1.78 8.92 71.98 0.64 -1.14 16 27 F -0.19 -3.58 17.05 44.97 0.77 -2.81 16 28 F -0.19 -2.76 16.51 44.97 0.74 -2.02 16 29 C -0.13 -1.61 7.40 31.12 0.23 -1.38 16 30 H 0.06 1.13 7.22 -2.38 -0.02 1.12 16 31 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.07 2.15 8.07 -2.39 -0.02 2.13 16 34 H 0.10 2.11 6.44 -2.39 -0.02 2.09 16 35 H 0.05 2.11 7.13 -2.39 -0.02 2.10 16 36 H 0.02 0.90 6.85 -2.39 -0.02 0.89 16 37 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 38 H 0.11 2.53 7.40 -2.39 -0.02 2.51 16 39 H 0.09 1.65 7.17 -2.39 -0.02 1.63 16 40 H 0.35 8.65 8.24 -89.69 -0.74 7.91 16 41 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 43 H 0.42 5.28 8.28 -92.71 -0.77 4.51 16 44 H 0.10 1.07 7.87 -2.39 -0.02 1.05 16 45 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.10 1.26 8.12 -2.39 -0.02 1.24 16 48 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -82.50 402.79 1.22 -81.27 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -0.57 Total: 21.21 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: 5.59 Total: 15.22 kcal Atomic # 7 Polarization: -111.39 SS G_CDS: -7.10 Total: -118.50 kcal Atomic # 8 Polarization: -41.03 SS G_CDS: -0.10 Total: -41.13 kcal Atomic # 9 Polarization: -6.34 SS G_CDS: 1.51 Total: -4.83 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.74 kcal Total: -82.50 1.22 -81.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490989256.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.485 kcal (2) G-P(sol) polarization free energy of solvation -82.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds