Wall clock time and date at job start Wed Apr 1 2020 06:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46901 * 111.00038 * 2 1 4 4 C 1.52997 * 109.46941 * 66.04962 * 3 2 1 5 5 N 1.46496 * 109.47194 * 180.02562 * 4 3 2 6 6 C 1.34779 * 120.00054 * 179.97438 * 5 4 3 7 7 O 1.21273 * 120.00093 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99767 * 179.97438 * 6 5 4 9 9 C 1.53000 * 109.46735 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47060 * 180.02562 * 9 8 6 11 11 C 1.52999 * 109.47317 * 59.99960 * 10 9 8 12 12 F 1.39895 * 109.47493 * 179.97438 * 11 10 9 13 13 F 1.39905 * 109.47109 * 60.00092 * 11 10 9 14 14 C 1.53005 * 109.47159 * 300.00546 * 11 10 9 15 15 C 1.52997 * 109.47452 * 59.99536 * 14 11 10 16 16 C 1.46906 * 110.99975 * 236.04791 * 2 1 3 17 17 C 1.50701 * 109.47380 * 293.95220 * 16 2 1 18 18 O 1.21294 * 119.99772 * 359.97438 * 17 16 2 19 19 N 1.34774 * 120.00184 * 179.97438 * 17 16 2 20 20 C 1.37100 * 119.99957 * 179.97438 * 19 17 16 21 21 H 1.07994 * 120.00010 * 0.02562 * 20 19 17 22 22 C 1.38951 * 119.99751 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99914 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99579 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47277 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46991 * 120.00500 * 24 22 20 27 27 H 1.48497 * 109.47387 * 240.00327 * 24 22 20 28 28 H 1.08996 * 109.47344 * 60.00063 * 1 2 3 29 29 H 1.09010 * 109.46822 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47254 * 299.99605 * 1 2 3 31 31 H 1.09001 * 109.46874 * 306.04915 * 3 2 1 32 32 H 1.09002 * 109.47401 * 186.04927 * 3 2 1 33 33 H 1.08998 * 109.47624 * 59.99808 * 4 3 2 34 34 H 1.09002 * 109.47045 * 300.00184 * 4 3 2 35 35 H 0.97005 * 120.00266 * 359.97438 * 5 4 3 36 36 H 1.08992 * 109.47518 * 300.00347 * 8 6 5 37 37 H 1.09002 * 109.47398 * 300.00410 * 9 8 6 38 38 H 1.09001 * 109.47194 * 60.00591 * 9 8 6 39 39 H 1.08996 * 109.47853 * 180.02562 * 10 9 8 40 40 H 1.09002 * 109.47153 * 300.00319 * 10 9 8 41 41 H 1.09002 * 109.46935 * 299.99411 * 14 11 10 42 42 H 1.09001 * 109.46812 * 179.97438 * 14 11 10 43 43 H 1.08993 * 109.47194 * 179.97438 * 15 14 11 44 44 H 1.09002 * 109.46695 * 59.99734 * 15 14 11 45 45 H 1.09002 * 109.47181 * 53.95479 * 16 2 1 46 46 H 1.09000 * 109.47257 * 173.95107 * 16 2 1 47 47 H 0.96996 * 119.99642 * 0.02562 * 19 17 16 48 48 H 0.97005 * 119.99759 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 1.3183 5 7 2.1559 3.4252 1.3181 6 6 1.9545 4.2243 2.3846 7 8 1.3395 3.8109 3.3446 8 6 2.4946 5.6313 2.3845 9 6 2.1305 6.3173 3.7028 10 6 2.6782 7.7458 3.7026 11 6 2.0680 8.5258 2.5364 12 9 2.5683 9.8323 2.5365 13 9 0.6763 8.5600 2.6755 14 6 2.4320 7.8398 1.2180 15 6 1.8843 6.4112 1.2182 16 6 1.9954 -0.7660 -1.1377 17 6 1.6369 -2.2204 -0.9730 18 8 1.0055 -2.5833 -0.0031 19 7 2.0180 -3.1179 -1.9034 20 6 1.6923 -4.4412 -1.7533 21 1 1.1301 -4.7643 -0.8898 22 6 2.0848 -5.3664 -2.7129 23 7 2.7685 -4.9731 -3.7639 24 14 1.6404 -7.1692 -2.5087 25 1 0.8732 -7.3505 -1.2501 26 1 0.8121 -7.6084 -3.6604 27 1 2.8820 -7.9820 -2.4535 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.5610 1.9273 -0.8309 32 1 3.0797 1.3445 -0.1083 33 1 2.0658 1.5015 2.1492 34 1 0.5472 2.0843 1.4266 35 1 2.6482 3.7559 0.5504 36 1 3.5788 5.6044 2.2767 37 1 1.0462 6.3442 3.8111 38 1 2.5649 5.7614 4.5337 39 1 2.4193 8.2345 4.6419 40 1 3.7625 7.7193 3.5941 41 1 3.5162 7.8132 1.1095 42 1 1.9968 8.3953 0.3872 43 1 2.1432 5.9227 0.2789 44 1 0.8000 6.4379 1.3268 45 1 1.5611 -0.3872 -2.0629 46 1 3.0797 -0.6611 -1.1757 47 1 2.5233 -2.8277 -2.6788 48 1 3.0428 -5.6191 -4.4336 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492429904.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:09:29 Heat of formation + Delta-G solvation = -183.607592 kcal Electronic energy + Delta-G solvation = -30095.376447 eV Core-core repulsion = 25434.338314 eV Total energy + Delta-G solvation = -4661.038132 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.39611 -47.37994 -40.44998 -38.72866 -37.61455 -36.74576 -34.76807 -33.83525 -31.76372 -31.28854 -31.11247 -29.24061 -27.71079 -25.47429 -24.36751 -23.77462 -23.26561 -21.29666 -21.10780 -20.17637 -19.19591 -17.94400 -17.86988 -17.44030 -17.33943 -16.74356 -16.40192 -16.03956 -15.84853 -15.18322 -14.99902 -14.70435 -14.58239 -14.42707 -14.18573 -13.99182 -13.84925 -13.68325 -13.52726 -13.50610 -13.33199 -13.10220 -12.93307 -12.68548 -12.30133 -12.16119 -12.11250 -11.88925 -11.81371 -11.54582 -11.43561 -11.31313 -11.27902 -11.08917 -10.97430 -10.69414 -10.35300 -10.24360 -10.04809 -9.50787 -9.27133 -8.50951 -8.01427 -7.91927 -6.43848 -3.84515 2.34937 2.77608 3.15100 3.25892 3.26022 3.33343 3.53308 3.75294 3.83005 3.87744 4.03643 4.20552 4.24998 4.30718 4.46038 4.48291 4.65602 4.73736 4.80709 4.93595 4.99323 5.05768 5.09141 5.17891 5.22094 5.22513 5.34453 5.36404 5.40841 5.57175 5.59874 5.65566 5.76929 5.79986 5.85653 5.89312 5.97032 6.17340 6.25038 6.52872 7.14047 7.21976 7.29155 7.53845 7.95135 8.04647 8.59636 9.16440 9.52163 10.03925 10.73949 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.037517 B = 0.001461 C = 0.001438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.155758 B =19163.106353 C =19464.574553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.515 5.515 3 C 0.045 3.955 4 C 0.120 3.880 5 N -0.728 5.728 6 C 0.518 3.482 7 O -0.533 6.533 8 C -0.111 4.111 9 C -0.100 4.100 10 C -0.158 4.158 11 C 0.286 3.714 12 F -0.203 7.203 13 F -0.198 7.198 14 C -0.156 4.156 15 C -0.112 4.112 16 C 0.047 3.953 17 C 0.443 3.557 18 O -0.576 6.576 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 H 0.015 0.985 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.036 0.964 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.399 0.601 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.048 0.952 46 H 0.089 0.911 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.376 28.461 6.662 29.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.239 5.239 3 C -0.084 4.084 4 C -0.003 4.003 5 N -0.380 5.380 6 C 0.303 3.697 7 O -0.409 6.409 8 C -0.133 4.133 9 C -0.138 4.138 10 C -0.196 4.196 11 C 0.250 3.750 12 F -0.184 7.184 13 F -0.179 7.179 14 C -0.194 4.194 15 C -0.150 4.150 16 C -0.084 4.084 17 C 0.229 3.771 18 O -0.460 6.460 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 H 0.034 0.966 29 H 0.116 0.884 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.233 0.767 36 H 0.122 0.878 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.110 0.890 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.066 0.934 46 H 0.107 0.893 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.691 27.570 8.294 28.916 hybrid contribution 0.147 0.005 -1.732 1.738 sum 2.838 27.574 6.562 28.486 Atomic orbital electron populations 1.22629 0.86446 1.04790 0.99111 1.61444 1.08973 1.10404 1.43102 1.22252 1.00720 0.89831 0.95631 1.21360 0.99673 0.80602 0.98681 1.45964 1.57983 1.14426 1.19647 1.20419 0.79876 0.86957 0.82437 1.90742 1.40424 1.75635 1.34083 1.21440 1.02223 0.92201 0.97402 1.21333 1.03184 0.92680 0.96636 1.22557 1.02462 0.96750 0.97835 1.21152 0.75732 0.79478 0.98666 1.93014 1.87292 1.40416 1.97689 1.93014 1.31293 1.96546 1.97025 1.22511 1.04093 0.97040 0.95767 1.21524 1.02015 0.93419 0.98011 1.21870 1.00658 0.94263 0.91624 1.19703 0.85554 0.86595 0.85289 1.90497 1.43850 1.80083 1.31563 1.41867 1.49445 1.07384 1.21408 1.19758 1.32889 0.82242 1.07889 0.87815 1.25260 0.96815 1.00595 0.95288 1.69619 1.38165 1.35675 1.10897 0.85800 0.78215 0.81892 0.78440 1.19196 1.20792 1.20749 0.96622 0.88350 0.91842 0.94591 0.90302 0.90188 0.91110 0.76746 0.87824 0.89907 0.89421 0.88990 0.88584 0.88370 0.88951 0.89753 0.90032 0.93351 0.89327 0.77518 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.96 60.06 0.54 0.82 16 2 N -0.52 -8.14 4.50 -244.37 -1.10 -9.24 16 3 C 0.04 0.49 5.07 -3.82 -0.02 0.48 16 4 C 0.12 1.34 5.60 -4.05 -0.02 1.31 16 5 N -0.73 -5.92 5.45 -60.30 -0.33 -6.25 16 6 C 0.52 4.91 7.15 -10.98 -0.08 4.83 16 7 O -0.53 -7.51 15.98 5.56 0.09 -7.42 16 8 C -0.11 -0.64 2.53 -91.77 -0.23 -0.87 16 9 C -0.10 -0.66 4.37 -26.73 -0.12 -0.77 16 10 C -0.16 -0.80 5.45 -26.73 -0.15 -0.95 16 11 C 0.29 1.85 2.10 -26.73 -0.06 1.79 16 12 F -0.20 -1.63 17.06 2.25 0.04 -1.59 16 13 F -0.20 -1.75 16.02 2.25 0.04 -1.72 16 14 C -0.16 -0.65 5.45 -26.73 -0.15 -0.80 16 15 C -0.11 -0.51 4.98 -26.73 -0.13 -0.64 16 16 C 0.05 0.80 5.45 -4.97 -0.03 0.77 16 17 C 0.44 10.22 7.47 -10.99 -0.08 10.13 16 18 O -0.58 -15.28 13.91 5.55 0.08 -15.20 16 19 N -0.56 -14.02 5.29 -10.96 -0.06 -14.07 16 20 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 21 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.21 13.05 55.50 0.72 -23.48 16 24 Si 0.93 20.86 29.55 -169.99 -5.02 15.83 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.10 1.92 5.83 -51.92 -0.30 1.61 16 30 H 0.06 0.91 6.47 -51.93 -0.34 0.57 16 31 H 0.04 0.35 8.12 -51.93 -0.42 -0.07 16 32 H 0.08 0.77 7.93 -51.93 -0.41 0.36 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 0.88 6.55 -51.93 -0.34 0.54 16 35 H 0.40 1.97 7.89 -40.82 -0.32 1.65 16 36 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.70 7.76 -51.93 -0.40 0.29 16 38 H 0.09 0.61 8.10 -51.93 -0.42 0.19 16 39 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 42 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.08 0.24 7.57 -51.93 -0.39 -0.16 16 44 H 0.08 0.51 7.80 -51.93 -0.41 0.10 16 45 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 46 H 0.09 1.33 7.93 -51.93 -0.41 0.92 16 47 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 48 H 0.27 6.86 8.31 -40.82 -0.34 6.53 16 LS Contribution 392.34 15.07 5.91 5.91 Total: -1.00 -34.01 392.34 -7.78 -41.78 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -7.38 Total: 7.21 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: -0.76 Total: 8.24 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.76 Total: -53.05 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: 0.17 Total: -22.62 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.07 Total: -3.31 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.01 -7.78 -41.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492429904.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.823 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds