Wall clock time and date at job start Wed Apr 1 2020 06:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46901 * 111.00038 * 2 1 4 4 C 1.52997 * 109.46941 * 66.04962 * 3 2 1 5 5 N 1.46496 * 109.47194 * 180.02562 * 4 3 2 6 6 C 1.34779 * 120.00054 * 179.97438 * 5 4 3 7 7 O 1.21273 * 120.00093 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99767 * 179.97438 * 6 5 4 9 9 C 1.53000 * 109.46735 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47060 * 180.02562 * 9 8 6 11 11 C 1.52999 * 109.47317 * 59.99960 * 10 9 8 12 12 F 1.39895 * 109.47493 * 179.97438 * 11 10 9 13 13 F 1.39905 * 109.47109 * 60.00092 * 11 10 9 14 14 C 1.53005 * 109.47159 * 300.00546 * 11 10 9 15 15 C 1.52997 * 109.47452 * 59.99536 * 14 11 10 16 16 C 1.46906 * 110.99975 * 236.04791 * 2 1 3 17 17 C 1.50701 * 109.47380 * 293.95220 * 16 2 1 18 18 O 1.21294 * 119.99772 * 359.97438 * 17 16 2 19 19 N 1.34774 * 120.00184 * 179.97438 * 17 16 2 20 20 C 1.37100 * 119.99957 * 179.97438 * 19 17 16 21 21 H 1.07994 * 120.00010 * 0.02562 * 20 19 17 22 22 C 1.38951 * 119.99751 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99914 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99579 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47277 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46991 * 120.00500 * 24 22 20 27 27 H 1.48497 * 109.47387 * 240.00327 * 24 22 20 28 28 H 1.08996 * 109.47344 * 60.00063 * 1 2 3 29 29 H 1.09010 * 109.46822 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47254 * 299.99605 * 1 2 3 31 31 H 1.09001 * 109.46874 * 306.04915 * 3 2 1 32 32 H 1.09002 * 109.47401 * 186.04927 * 3 2 1 33 33 H 1.08998 * 109.47624 * 59.99808 * 4 3 2 34 34 H 1.09002 * 109.47045 * 300.00184 * 4 3 2 35 35 H 0.97005 * 120.00266 * 359.97438 * 5 4 3 36 36 H 1.08992 * 109.47518 * 300.00347 * 8 6 5 37 37 H 1.09002 * 109.47398 * 300.00410 * 9 8 6 38 38 H 1.09001 * 109.47194 * 60.00591 * 9 8 6 39 39 H 1.08996 * 109.47853 * 180.02562 * 10 9 8 40 40 H 1.09002 * 109.47153 * 300.00319 * 10 9 8 41 41 H 1.09002 * 109.46935 * 299.99411 * 14 11 10 42 42 H 1.09001 * 109.46812 * 179.97438 * 14 11 10 43 43 H 1.08993 * 109.47194 * 179.97438 * 15 14 11 44 44 H 1.09002 * 109.46695 * 59.99734 * 15 14 11 45 45 H 1.09002 * 109.47181 * 53.95479 * 16 2 1 46 46 H 1.09000 * 109.47257 * 173.95107 * 16 2 1 47 47 H 0.96996 * 119.99642 * 0.02562 * 19 17 16 48 48 H 0.97005 * 119.99759 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 1.3183 5 7 2.1559 3.4252 1.3181 6 6 1.9545 4.2243 2.3846 7 8 1.3395 3.8109 3.3446 8 6 2.4946 5.6313 2.3845 9 6 2.1305 6.3173 3.7028 10 6 2.6782 7.7458 3.7026 11 6 2.0680 8.5258 2.5364 12 9 2.5683 9.8323 2.5365 13 9 0.6763 8.5600 2.6755 14 6 2.4320 7.8398 1.2180 15 6 1.8843 6.4112 1.2182 16 6 1.9954 -0.7660 -1.1377 17 6 1.6369 -2.2204 -0.9730 18 8 1.0055 -2.5833 -0.0031 19 7 2.0180 -3.1179 -1.9034 20 6 1.6923 -4.4412 -1.7533 21 1 1.1301 -4.7643 -0.8898 22 6 2.0848 -5.3664 -2.7129 23 7 2.7685 -4.9731 -3.7639 24 14 1.6404 -7.1692 -2.5087 25 1 0.8732 -7.3505 -1.2501 26 1 0.8121 -7.6084 -3.6604 27 1 2.8820 -7.9820 -2.4535 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.5610 1.9273 -0.8309 32 1 3.0797 1.3445 -0.1083 33 1 2.0658 1.5015 2.1492 34 1 0.5472 2.0843 1.4266 35 1 2.6482 3.7559 0.5504 36 1 3.5788 5.6044 2.2767 37 1 1.0462 6.3442 3.8111 38 1 2.5649 5.7614 4.5337 39 1 2.4193 8.2345 4.6419 40 1 3.7625 7.7193 3.5941 41 1 3.5162 7.8132 1.1095 42 1 1.9968 8.3953 0.3872 43 1 2.1432 5.9227 0.2789 44 1 0.8000 6.4379 1.3268 45 1 1.5611 -0.3872 -2.0629 46 1 3.0797 -0.6611 -1.1757 47 1 2.5233 -2.8277 -2.6788 48 1 3.0428 -5.6191 -4.4336 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001492429904.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:09:28 Heat of formation + Delta-G solvation = -209.162477 kcal Electronic energy + Delta-G solvation = -30096.484590 eV Core-core repulsion = 25434.338314 eV Total energy + Delta-G solvation = -4662.146275 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.94387 -47.95074 -41.17545 -40.35566 -38.42246 -37.83272 -36.01611 -35.50871 -33.26561 -32.20118 -31.71865 -30.22978 -29.01227 -27.02609 -25.61658 -24.28371 -24.00353 -22.31391 -21.73630 -20.97846 -20.74788 -19.84371 -18.47429 -18.16633 -17.87520 -17.65804 -17.33393 -17.15424 -16.83078 -16.55784 -16.21368 -16.07202 -15.62348 -15.36129 -15.14322 -15.01648 -14.86846 -14.60486 -14.48705 -14.32160 -14.13688 -13.94530 -13.77294 -13.45610 -13.38443 -13.19326 -13.03659 -12.90922 -12.77341 -12.62867 -12.56167 -12.53556 -12.38513 -12.20618 -12.13224 -12.06932 -11.71917 -11.45395 -11.11610 -10.84320 -10.27574 -10.09390 -9.97888 -9.22532 -8.45493 -5.93458 1.37108 1.42655 1.56308 1.62554 2.01037 2.08101 2.31278 2.83298 2.90605 3.13587 3.21827 3.32994 3.42915 3.45375 3.74496 3.84399 3.86625 3.98999 4.08089 4.09607 4.27048 4.31767 4.34493 4.37854 4.48617 4.54540 4.62260 4.63897 4.64920 4.68292 4.82103 4.88001 4.89725 4.96066 4.98338 5.02196 5.15530 5.21968 5.27892 5.41060 5.43231 5.86638 6.05996 6.18880 6.56698 6.63192 7.15537 7.27531 7.59261 8.15860 8.72029 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.037517 B = 0.001461 C = 0.001438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.155758 B =19163.106353 C =19464.574553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.540 5.540 3 C 0.053 3.947 4 C 0.129 3.871 5 N -0.711 5.711 6 C 0.514 3.486 7 O -0.587 6.587 8 C -0.101 4.101 9 C -0.099 4.099 10 C -0.151 4.151 11 C 0.272 3.728 12 F -0.213 7.213 13 F -0.218 7.218 14 C -0.149 4.149 15 C -0.108 4.108 16 C 0.061 3.939 17 C 0.439 3.561 18 O -0.617 6.617 19 N -0.574 5.574 20 C -0.332 4.332 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.991 3.009 25 H -0.275 1.275 26 H -0.271 1.271 27 H -0.271 1.271 28 H 0.035 0.965 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.419 0.581 36 H 0.140 0.860 37 H 0.054 0.946 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.123 0.877 41 H 0.127 0.873 42 H 0.096 0.904 43 H 0.111 0.889 44 H 0.058 0.942 45 H 0.073 0.927 46 H 0.116 0.884 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.419 29.976 4.925 30.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.265 5.265 3 C -0.075 4.075 4 C 0.004 3.996 5 N -0.364 5.364 6 C 0.301 3.699 7 O -0.467 6.467 8 C -0.122 4.122 9 C -0.137 4.137 10 C -0.189 4.189 11 C 0.237 3.763 12 F -0.194 7.194 13 F -0.199 7.199 14 C -0.187 4.187 15 C -0.146 4.146 16 C -0.070 4.070 17 C 0.226 3.774 18 O -0.503 6.503 19 N -0.212 5.212 20 C -0.461 4.461 21 H 0.095 0.905 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.815 3.185 25 H -0.200 1.200 26 H -0.196 1.196 27 H -0.196 1.196 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.257 0.743 36 H 0.158 0.842 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.115 0.885 43 H 0.130 0.870 44 H 0.077 0.923 45 H 0.091 0.909 46 H 0.134 0.866 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.767 29.129 6.505 30.224 hybrid contribution -0.520 -0.401 -1.121 1.300 sum 4.247 28.727 5.384 29.534 Atomic orbital electron populations 1.22454 0.87019 1.02315 1.00535 1.61326 1.08796 1.13357 1.43046 1.22262 1.01934 0.87249 0.96058 1.21070 0.98580 0.81929 0.98042 1.45762 1.57484 1.13044 1.20161 1.21146 0.78840 0.88260 0.81643 1.90727 1.42884 1.76893 1.36195 1.21463 1.04089 0.89345 0.97295 1.21263 1.01457 0.93798 0.97229 1.22533 1.03856 0.95198 0.97306 1.21641 0.74738 0.79287 1.00672 1.92991 1.87296 1.41296 1.97832 1.92977 1.33109 1.96613 1.97232 1.22536 1.05856 0.96065 0.94241 1.21523 1.00635 0.93862 0.98530 1.21737 1.02399 0.89802 0.93064 1.20869 0.83675 0.88983 0.83826 1.90481 1.45203 1.81516 1.33080 1.41924 1.50133 1.06967 1.22194 1.19673 1.34333 0.84177 1.07938 0.90512 1.25980 0.96330 1.04131 0.94718 1.69668 1.38218 1.37021 1.11160 0.84905 0.78233 0.77224 0.78173 1.20020 1.19645 1.19630 0.94619 0.92664 0.90992 0.91949 0.88112 0.92818 0.92799 0.74328 0.84212 0.92748 0.90146 0.89408 0.85831 0.85501 0.88504 0.87030 0.92267 0.90899 0.86585 0.76926 0.91349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.77 8.96 127.69 1.14 1.92 16 2 N -0.54 -16.22 4.50 -927.04 -4.17 -20.39 16 3 C 0.05 1.00 5.07 86.30 0.44 1.44 16 4 C 0.13 2.68 5.60 86.38 0.48 3.16 16 5 N -0.71 -9.79 5.45 -463.07 -2.52 -12.31 16 6 C 0.51 9.10 7.15 87.66 0.63 9.73 16 7 O -0.59 -16.97 15.98 -3.01 -0.05 -17.02 16 8 C -0.10 -0.91 2.53 -11.54 -0.03 -0.94 16 9 C -0.10 -1.24 4.37 30.59 0.13 -1.11 16 10 C -0.15 -1.30 5.45 30.59 0.17 -1.13 16 11 C 0.27 3.11 2.10 30.60 0.06 3.18 16 12 F -0.21 -3.11 17.06 44.97 0.77 -2.34 16 13 F -0.22 -3.89 16.02 44.97 0.72 -3.17 16 14 C -0.15 -0.77 5.45 30.60 0.17 -0.61 16 15 C -0.11 -0.67 4.98 30.59 0.15 -0.52 16 16 C 0.06 1.94 5.45 85.56 0.47 2.41 16 17 C 0.44 20.37 7.47 87.66 0.66 21.03 16 18 O -0.62 -33.83 13.91 -3.07 -0.04 -33.87 16 19 N -0.57 -28.84 5.29 -306.99 -1.62 -30.46 16 20 C -0.33 -18.68 9.68 84.04 0.81 -17.86 16 21 H 0.08 4.66 7.16 -2.91 -0.02 4.63 16 22 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 23 N -0.92 -48.81 13.05 21.66 0.28 -48.53 16 24 Si 0.99 42.74 29.55 68.60 2.03 44.77 16 25 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 27 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 28 H 0.04 0.94 8.14 -2.39 -0.02 0.93 16 29 H 0.05 2.22 5.83 -2.38 -0.01 2.20 16 30 H 0.07 2.07 6.47 -2.39 -0.02 2.05 16 31 H 0.06 0.92 8.12 -2.39 -0.02 0.90 16 32 H 0.10 1.52 7.93 -2.39 -0.02 1.50 16 33 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.05 1.31 6.55 -2.39 -0.02 1.30 16 35 H 0.42 2.33 7.89 -92.70 -0.73 1.60 16 36 H 0.14 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.05 0.98 7.76 -2.39 -0.02 0.96 16 38 H 0.08 1.11 8.10 -2.39 -0.02 1.09 16 39 H 0.09 0.82 8.14 -2.39 -0.02 0.81 16 40 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.13 -0.02 8.14 -2.39 -0.02 -0.04 16 42 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.11 0.12 7.57 -2.39 -0.02 0.10 16 44 H 0.06 0.67 7.80 -2.39 -0.02 0.65 16 45 H 0.07 2.00 8.12 -2.39 -0.02 1.98 16 46 H 0.12 3.09 7.93 -2.39 -0.02 3.07 16 47 H 0.40 18.69 7.90 -92.71 -0.73 17.96 16 48 H 0.28 13.74 8.31 -92.70 -0.77 12.97 16 Total: -1.00 -78.64 392.34 0.67 -77.97 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: -0.47 Total: 24.83 kcal Atomic # 6 Polarization: 14.78 SS G_CDS: 5.75 Total: 20.53 kcal Atomic # 7 Polarization: -103.66 SS G_CDS: -8.03 Total: -111.69 kcal Atomic # 8 Polarization: -50.80 SS G_CDS: -0.09 Total: -50.89 kcal Atomic # 9 Polarization: -7.00 SS G_CDS: 1.49 Total: -5.51 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -78.64 0.67 -77.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492429904.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.194 kcal (2) G-P(sol) polarization free energy of solvation -78.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds