Wall clock time and date at job start Wed Apr 1 2020 06:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00450 * 2 1 4 4 C 1.50703 * 109.47043 * 66.04261 * 3 2 1 5 5 O 1.21287 * 120.00026 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99655 * 180.02562 * 4 3 2 7 7 C 1.37100 * 119.99543 * 179.97438 * 6 4 3 8 8 H 1.08001 * 119.99884 * 0.02562 * 7 6 4 9 9 C 1.38950 * 119.99889 * 179.97438 * 7 6 4 10 10 N 1.31412 * 120.00135 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99979 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47287 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46959 * 120.00410 * 11 9 7 14 14 H 1.48508 * 109.47262 * 240.00278 * 11 9 7 15 15 C 1.46899 * 111.00047 * 236.04483 * 2 1 3 16 16 C 1.52998 * 109.47189 * 293.95326 * 15 2 1 17 17 H 1.09007 * 110.88602 * 57.42226 * 16 15 2 18 18 C 1.55150 * 111.00733 * 181.34937 * 16 15 2 19 19 C 1.54326 * 102.94716 * 153.57648 * 18 16 15 20 20 N 1.47027 * 107.26867 * 337.81120 * 19 18 16 21 21 C 1.34776 * 125.64913 * 178.97673 * 20 19 18 22 22 O 1.21553 * 119.99792 * 175.12365 * 21 20 19 23 23 C 1.47829 * 119.99887 * 355.11995 * 21 20 19 24 24 C 1.39948 * 120.94069 * 7.28967 * 23 21 20 25 25 N 1.32150 * 118.92475 * 179.71391 * 24 23 21 26 26 C 1.31865 * 120.96554 * 0.57246 * 25 24 23 27 27 N 1.31866 * 122.09579 * 359.69874 * 26 25 24 28 28 C 1.32148 * 120.97185 * 0.02562 * 27 26 25 29 29 C 1.47427 * 108.70324 * 358.93812 * 20 19 18 30 30 H 1.08999 * 109.46980 * 183.95912 * 1 2 3 31 31 H 1.09004 * 109.47132 * 303.95384 * 1 2 3 32 32 H 1.08997 * 109.47069 * 63.95395 * 1 2 3 33 33 H 1.08996 * 109.47681 * 186.04624 * 3 2 1 34 34 H 1.09006 * 109.46921 * 306.04568 * 3 2 1 35 35 H 0.96996 * 120.00316 * 0.02562 * 6 4 3 36 36 H 0.96995 * 120.00397 * 179.97438 * 10 9 7 37 37 H 1.09002 * 109.47280 * 173.95491 * 15 2 1 38 38 H 1.08991 * 109.47070 * 53.95630 * 15 2 1 39 39 H 1.09001 * 110.71915 * 35.21430 * 18 16 15 40 40 H 1.09001 * 110.72106 * 271.94332 * 18 16 15 41 41 H 1.08992 * 109.88455 * 218.39290 * 19 18 16 42 42 H 1.09000 * 109.88003 * 97.22032 * 19 18 16 43 43 H 1.08008 * 120.53746 * 359.97438 * 24 23 21 44 44 H 1.08003 * 118.95128 * 179.67806 * 26 25 24 45 45 H 1.07997 * 120.54301 * 180.02562 * 28 27 26 46 46 H 1.08992 * 110.37106 * 142.96707 * 29 20 19 47 47 H 1.08998 * 110.36382 * 265.29353 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2984 5 8 1.0054 1.4454 2.1411 6 7 2.0182 3.3202 1.5232 7 6 1.6915 3.9351 2.7043 8 1 1.1291 3.3992 3.4546 9 6 2.0849 5.2474 2.9363 10 7 2.7697 5.8993 2.0236 11 14 1.6405 6.0850 4.5457 12 1 0.8732 5.1424 5.3990 13 1 2.8822 6.4920 5.2513 14 1 0.8132 7.2863 4.2667 15 6 1.9954 -0.7660 -1.1376 16 6 1.6315 -2.2426 -0.9703 17 1 0.5523 -2.3695 -0.8839 18 6 2.2005 -3.0914 -2.1378 19 6 2.3579 -4.4897 -1.5039 20 7 2.4369 -4.3024 -0.0478 21 6 2.5584 -5.2863 0.8652 22 8 2.7038 -5.0106 2.0401 23 6 2.5146 -6.7008 0.4378 24 6 2.5002 -7.0423 -0.9193 25 7 2.4666 -8.3196 -1.2566 26 6 2.4355 -9.2637 -0.3366 27 7 2.4422 -8.9863 0.9525 28 6 2.4802 -7.7361 1.3789 29 6 2.3622 -2.8601 0.2481 30 1 -0.3633 -1.0252 0.0710 31 1 -0.3633 0.5740 0.8525 32 1 -0.3633 0.4512 -0.9233 33 1 3.0798 1.3444 -0.1082 34 1 1.5612 1.9273 -0.8310 35 1 2.5229 3.8016 0.8492 36 1 3.0440 6.8154 2.1853 37 1 3.0797 -0.6611 -1.1756 38 1 1.5612 -0.3873 -2.0627 39 1 3.1664 -2.7037 -2.4613 40 1 1.4976 -3.1223 -2.9704 41 1 3.2712 -4.9606 -1.8672 42 1 1.4953 -5.1082 -1.7518 43 1 2.5205 -6.2745 -1.6786 44 1 2.4032 -10.2971 -0.6489 45 1 2.4858 -7.5168 2.4364 46 1 1.7903 -2.6890 1.1601 47 1 3.3635 -2.4400 0.3428 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494124348.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:48 Heat of formation + Delta-G solvation = 17.595171 kcal Electronic energy + Delta-G solvation = -29691.180621 eV Core-core repulsion = 25489.556481 eV Total energy + Delta-G solvation = -4201.624140 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.75577 -40.16787 -38.74722 -37.92879 -36.25585 -34.37911 -33.87905 -33.19617 -31.87410 -31.23475 -29.88352 -27.89175 -27.04615 -25.86567 -25.03270 -24.54015 -23.61747 -22.12738 -20.55278 -20.16424 -19.14997 -18.43459 -17.97452 -17.83855 -17.43036 -16.64029 -16.03102 -15.94585 -15.41899 -15.23174 -15.02728 -14.63858 -14.49506 -14.38154 -14.10892 -14.04793 -13.61972 -13.56498 -13.41995 -13.25235 -12.89232 -12.42039 -12.17890 -12.05875 -11.84732 -11.59013 -11.42902 -11.37866 -11.32767 -11.18879 -11.13875 -10.91933 -10.73615 -10.33662 -10.28064 -10.21973 -10.20545 -9.77789 -9.48300 -9.01449 -8.46396 -7.97961 -7.87318 -6.41580 -3.82134 -0.04217 0.51662 2.43937 2.50324 3.16672 3.27404 3.32474 3.34708 3.53628 3.62912 3.78431 3.90974 3.96044 3.98113 4.13455 4.20948 4.35635 4.44438 4.57202 4.72538 4.81482 4.90440 5.04638 5.08540 5.20415 5.22932 5.26835 5.35158 5.46706 5.55403 5.61222 5.67830 5.72704 5.73962 5.88004 5.90341 5.96790 5.97702 6.07478 6.27702 6.32606 6.53532 7.07807 7.22050 7.34263 7.46987 7.55969 7.73143 8.07179 8.62214 9.18902 9.54967 10.06817 10.76255 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021947 B = 0.001843 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.490317 B =15193.010939 C =16065.866931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.518 5.518 3 C 0.046 3.954 4 C 0.444 3.556 5 O -0.576 6.576 6 N -0.565 5.565 7 C -0.297 4.297 8 H 0.104 0.896 9 C 0.022 3.978 10 N -0.902 5.902 11 Si 0.929 3.071 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.065 3.935 16 C -0.095 4.095 17 H 0.089 0.911 18 C -0.128 4.128 19 C 0.084 3.916 20 N -0.613 5.613 21 C 0.580 3.420 22 O -0.521 6.521 23 C -0.236 4.236 24 C 0.146 3.854 25 N -0.522 5.522 26 C 0.309 3.691 27 N -0.522 5.522 28 C 0.208 3.792 29 C 0.123 3.877 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.014 0.986 33 H 0.088 0.912 34 H 0.047 0.953 35 H 0.392 0.608 36 H 0.270 0.730 37 H 0.077 0.923 38 H 0.038 0.962 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.199 0.801 44 H 0.201 0.799 45 H 0.183 0.817 46 H 0.092 0.908 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.394 -23.459 -14.356 27.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.242 5.242 3 C -0.085 4.085 4 C 0.229 3.771 5 O -0.460 6.460 6 N -0.202 5.202 7 C -0.427 4.427 8 H 0.121 0.879 9 C -0.180 4.180 10 N -0.544 5.544 11 Si 0.756 3.244 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.208 1.208 15 C -0.064 4.064 16 C -0.115 4.115 17 H 0.107 0.893 18 C -0.166 4.166 19 C -0.039 4.039 20 N -0.347 5.347 21 C 0.367 3.633 22 O -0.397 6.397 23 C -0.244 4.244 24 C -0.020 4.020 25 N -0.236 5.236 26 C 0.022 3.978 27 N -0.235 5.235 28 C 0.041 3.959 29 C 0.002 3.998 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.032 0.968 33 H 0.106 0.894 34 H 0.065 0.935 35 H 0.225 0.775 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.056 0.944 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.215 0.785 44 H 0.218 0.782 45 H 0.199 0.801 46 H 0.110 0.890 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.258 -24.777 -12.926 27.947 hybrid contribution -0.042 2.013 -0.269 2.031 sum 0.216 -22.764 -13.195 26.313 Atomic orbital electron populations 1.22573 0.86789 1.01875 1.01487 1.61565 1.08722 1.12932 1.40991 1.21861 1.00632 0.88830 0.97176 1.19735 0.85469 0.82926 0.88960 1.90494 1.43834 1.64601 1.47061 1.41876 1.49500 1.10776 1.18054 1.19750 1.32776 0.95410 0.94746 0.87854 1.25253 0.96849 0.96676 0.99209 1.69615 1.38192 1.12186 1.34401 0.85811 0.78214 0.79008 0.81383 1.19211 1.20764 1.20810 1.22076 1.00422 0.91693 0.92211 1.22397 1.00832 0.94415 0.93836 0.89303 1.22743 1.02798 0.93061 0.98038 1.22555 1.01248 0.99119 0.80961 1.48419 1.72201 1.07789 1.06275 1.17396 0.77415 0.83467 0.84990 1.90859 1.48916 1.83354 1.16605 1.21801 1.09330 0.96322 0.96935 1.25100 0.87027 0.94663 0.95177 1.68587 1.14422 1.01320 1.39240 1.25325 0.87843 1.00187 0.84401 1.68598 1.14519 1.21678 1.18701 1.23567 0.84808 0.86248 1.01240 1.22299 1.01452 0.76721 0.99340 0.92194 0.88563 0.96760 0.89412 0.93471 0.77537 0.91964 0.90444 0.94370 0.89757 0.89450 0.90268 0.90389 0.78486 0.78206 0.80051 0.88999 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.98 60.06 0.54 0.85 16 2 N -0.52 -7.82 4.32 -244.37 -1.06 -8.88 16 3 C 0.05 0.78 5.45 -4.97 -0.03 0.75 16 4 C 0.44 10.21 7.47 -10.98 -0.08 10.13 16 5 O -0.58 -15.24 13.91 5.55 0.08 -15.16 16 6 N -0.57 -14.11 5.29 -10.96 -0.06 -14.17 16 7 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 9 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 10 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 11 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 14 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 15 C 0.06 0.67 4.41 -3.83 -0.02 0.66 16 16 C -0.10 -0.83 2.90 -88.47 -0.26 -1.09 16 17 H 0.09 0.82 6.54 -51.92 -0.34 0.48 16 18 C -0.13 -0.68 6.42 -24.90 -0.16 -0.84 16 19 C 0.08 0.47 4.88 -3.06 -0.01 0.46 16 20 N -0.61 -5.99 3.33 -171.91 -0.57 -6.56 16 21 C 0.58 6.83 7.82 -12.34 -0.10 6.73 16 22 O -0.52 -8.20 16.77 5.32 0.09 -8.11 16 23 C -0.24 -2.24 5.90 -104.69 -0.62 -2.86 16 24 C 0.15 1.11 9.87 -16.77 -0.17 0.95 16 25 N -0.52 -4.26 10.42 -14.24 -0.15 -4.41 16 26 C 0.31 2.33 12.27 -92.03 -1.13 1.20 16 27 N -0.52 -4.80 10.42 -14.24 -0.15 -4.94 16 28 C 0.21 1.99 10.88 -16.77 -0.18 1.80 16 29 C 0.12 1.39 6.19 -2.53 -0.02 1.37 16 30 H 0.06 0.79 6.44 -51.93 -0.33 0.45 16 31 H 0.10 1.84 5.83 -51.93 -0.30 1.53 16 32 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.09 1.33 7.93 -51.93 -0.41 0.91 16 34 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 35 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 36 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.08 0.75 7.89 -51.93 -0.41 0.34 16 38 H 0.04 0.36 8.12 -51.93 -0.42 -0.06 16 39 H 0.08 0.39 8.04 -51.93 -0.42 -0.02 16 40 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.08 0.32 6.82 -51.93 -0.35 -0.04 16 42 H 0.08 0.34 6.67 -51.93 -0.35 -0.01 16 43 H 0.20 1.00 2.96 -52.85 -0.16 0.84 16 44 H 0.20 0.80 8.06 -52.48 -0.42 0.37 16 45 H 0.18 1.60 7.76 -52.49 -0.41 1.19 16 46 H 0.09 1.33 8.09 -51.93 -0.42 0.91 16 47 H 0.08 0.90 8.00 -51.93 -0.42 0.48 16 LS Contribution 383.91 15.07 5.79 5.79 Total: -1.00 -34.72 383.91 -9.06 -43.77 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -6.26 Total: 8.10 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: -2.47 Total: 12.21 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: -1.26 Total: -62.63 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: 0.17 Total: -23.27 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.72 -9.06 -43.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494124348.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.369 kcal (2) G-P(sol) polarization free energy of solvation -34.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds