Wall clock time and date at job start Wed Apr 1 2020 06:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00450 * 2 1 4 4 C 1.50703 * 109.47043 * 66.04261 * 3 2 1 5 5 O 1.21287 * 120.00026 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99655 * 180.02562 * 4 3 2 7 7 C 1.37100 * 119.99543 * 179.97438 * 6 4 3 8 8 H 1.08001 * 119.99884 * 0.02562 * 7 6 4 9 9 C 1.38950 * 119.99889 * 179.97438 * 7 6 4 10 10 N 1.31412 * 120.00135 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99979 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47287 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.46959 * 120.00410 * 11 9 7 14 14 H 1.48508 * 109.47262 * 240.00278 * 11 9 7 15 15 C 1.46899 * 111.00047 * 236.04483 * 2 1 3 16 16 C 1.52998 * 109.47189 * 293.95326 * 15 2 1 17 17 H 1.09007 * 110.88602 * 57.42226 * 16 15 2 18 18 C 1.55150 * 111.00733 * 181.34937 * 16 15 2 19 19 C 1.54326 * 102.94716 * 153.57648 * 18 16 15 20 20 N 1.47027 * 107.26867 * 337.81120 * 19 18 16 21 21 C 1.34776 * 125.64913 * 178.97673 * 20 19 18 22 22 O 1.21553 * 119.99792 * 175.12365 * 21 20 19 23 23 C 1.47829 * 119.99887 * 355.11995 * 21 20 19 24 24 C 1.39948 * 120.94069 * 7.28967 * 23 21 20 25 25 N 1.32150 * 118.92475 * 179.71391 * 24 23 21 26 26 C 1.31865 * 120.96554 * 0.57246 * 25 24 23 27 27 N 1.31866 * 122.09579 * 359.69874 * 26 25 24 28 28 C 1.32148 * 120.97185 * 0.02562 * 27 26 25 29 29 C 1.47427 * 108.70324 * 358.93812 * 20 19 18 30 30 H 1.08999 * 109.46980 * 183.95912 * 1 2 3 31 31 H 1.09004 * 109.47132 * 303.95384 * 1 2 3 32 32 H 1.08997 * 109.47069 * 63.95395 * 1 2 3 33 33 H 1.08996 * 109.47681 * 186.04624 * 3 2 1 34 34 H 1.09006 * 109.46921 * 306.04568 * 3 2 1 35 35 H 0.96996 * 120.00316 * 0.02562 * 6 4 3 36 36 H 0.96995 * 120.00397 * 179.97438 * 10 9 7 37 37 H 1.09002 * 109.47280 * 173.95491 * 15 2 1 38 38 H 1.08991 * 109.47070 * 53.95630 * 15 2 1 39 39 H 1.09001 * 110.71915 * 35.21430 * 18 16 15 40 40 H 1.09001 * 110.72106 * 271.94332 * 18 16 15 41 41 H 1.08992 * 109.88455 * 218.39290 * 19 18 16 42 42 H 1.09000 * 109.88003 * 97.22032 * 19 18 16 43 43 H 1.08008 * 120.53746 * 359.97438 * 24 23 21 44 44 H 1.08003 * 118.95128 * 179.67806 * 26 25 24 45 45 H 1.07997 * 120.54301 * 180.02562 * 28 27 26 46 46 H 1.08992 * 110.37106 * 142.96707 * 29 20 19 47 47 H 1.08998 * 110.36382 * 265.29353 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2984 5 8 1.0054 1.4454 2.1411 6 7 2.0182 3.3202 1.5232 7 6 1.6915 3.9351 2.7043 8 1 1.1291 3.3992 3.4546 9 6 2.0849 5.2474 2.9363 10 7 2.7697 5.8993 2.0236 11 14 1.6405 6.0850 4.5457 12 1 0.8732 5.1424 5.3990 13 1 2.8822 6.4920 5.2513 14 1 0.8132 7.2863 4.2667 15 6 1.9954 -0.7660 -1.1376 16 6 1.6315 -2.2426 -0.9703 17 1 0.5523 -2.3695 -0.8839 18 6 2.2005 -3.0914 -2.1378 19 6 2.3579 -4.4897 -1.5039 20 7 2.4369 -4.3024 -0.0478 21 6 2.5584 -5.2863 0.8652 22 8 2.7038 -5.0106 2.0401 23 6 2.5146 -6.7008 0.4378 24 6 2.5002 -7.0423 -0.9193 25 7 2.4666 -8.3196 -1.2566 26 6 2.4355 -9.2637 -0.3366 27 7 2.4422 -8.9863 0.9525 28 6 2.4802 -7.7361 1.3789 29 6 2.3622 -2.8601 0.2481 30 1 -0.3633 -1.0252 0.0710 31 1 -0.3633 0.5740 0.8525 32 1 -0.3633 0.4512 -0.9233 33 1 3.0798 1.3444 -0.1082 34 1 1.5612 1.9273 -0.8310 35 1 2.5229 3.8016 0.8492 36 1 3.0440 6.8154 2.1853 37 1 3.0797 -0.6611 -1.1756 38 1 1.5612 -0.3873 -2.0627 39 1 3.1664 -2.7037 -2.4613 40 1 1.4976 -3.1223 -2.9704 41 1 3.2712 -4.9606 -1.8672 42 1 1.4953 -5.1082 -1.7518 43 1 2.5205 -6.2745 -1.6786 44 1 2.4032 -10.2971 -0.6489 45 1 2.4858 -7.5168 2.4364 46 1 1.7903 -2.6890 1.1601 47 1 3.3635 -2.4400 0.3428 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494124348.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:44 Heat of formation + Delta-G solvation = -8.690719 kcal Electronic energy + Delta-G solvation = -29692.320462 eV Core-core repulsion = 25489.556481 eV Total energy + Delta-G solvation = -4202.763981 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.43451 -40.94585 -40.30140 -39.01159 -37.46421 -35.86678 -35.01965 -34.00136 -33.26371 -32.61303 -30.60139 -29.29049 -27.98106 -26.90054 -26.29851 -25.50473 -24.46332 -23.08918 -21.31508 -20.97361 -20.93028 -19.83807 -19.13514 -18.57137 -18.17993 -17.83913 -17.14508 -16.86631 -16.55220 -16.47368 -16.39121 -15.98585 -15.60666 -15.30241 -15.16430 -14.91789 -14.82103 -14.74031 -14.52238 -14.05330 -13.85182 -13.71304 -13.46570 -13.19064 -13.05014 -12.81657 -12.66188 -12.58397 -12.39868 -12.33363 -12.12479 -12.03427 -11.96251 -11.85602 -11.47383 -11.43195 -11.17148 -10.92122 -10.42057 -10.24573 -9.97940 -9.81331 -9.11508 -8.45972 -5.93896 -0.70947 -0.13548 1.35811 1.40942 1.54809 1.61325 1.73110 2.08764 2.28747 2.66102 2.77881 3.00154 3.02645 3.21307 3.25603 3.33393 3.44338 3.58432 3.66530 3.82011 3.90945 4.19104 4.24090 4.28657 4.33427 4.41391 4.49104 4.52578 4.56721 4.58616 4.60307 4.69325 4.77440 4.85297 4.93238 4.99249 5.08693 5.16919 5.20916 5.24755 5.40373 5.42658 5.68186 5.91720 6.11046 6.27629 6.32176 6.63089 6.83997 6.87895 7.15327 7.59537 8.16400 8.71629 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021947 B = 0.001843 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.490317 B =15193.010939 C =16065.866931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.543 5.543 3 C 0.060 3.940 4 C 0.440 3.560 5 O -0.616 6.616 6 N -0.576 5.576 7 C -0.330 4.330 8 H 0.076 0.924 9 C -0.013 4.013 10 N -0.920 5.920 11 Si 0.990 3.010 12 H -0.276 1.276 13 H -0.272 1.272 14 H -0.270 1.270 15 C 0.066 3.934 16 C -0.088 4.088 17 H 0.085 0.915 18 C -0.113 4.113 19 C 0.072 3.928 20 N -0.610 5.610 21 C 0.575 3.425 22 O -0.578 6.578 23 C -0.248 4.248 24 C 0.161 3.839 25 N -0.528 5.528 26 C 0.312 3.688 27 N -0.538 5.538 28 C 0.200 3.800 29 C 0.122 3.878 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.034 0.966 33 H 0.110 0.890 34 H 0.070 0.930 35 H 0.396 0.604 36 H 0.277 0.723 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.116 0.884 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.227 0.773 44 H 0.235 0.765 45 H 0.176 0.824 46 H 0.047 0.953 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.815 -24.488 -17.956 30.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.267 5.267 3 C -0.071 4.071 4 C 0.227 3.773 5 O -0.502 6.502 6 N -0.214 5.214 7 C -0.460 4.460 8 H 0.094 0.906 9 C -0.212 4.212 10 N -0.561 5.561 11 Si 0.814 3.186 12 H -0.201 1.201 13 H -0.197 1.197 14 H -0.195 1.195 15 C -0.061 4.061 16 C -0.108 4.108 17 H 0.104 0.896 18 C -0.151 4.151 19 C -0.048 4.048 20 N -0.342 5.342 21 C 0.364 3.636 22 O -0.459 6.459 23 C -0.255 4.255 24 C -0.005 4.005 25 N -0.241 5.241 26 C 0.026 3.974 27 N -0.251 5.251 28 C 0.033 3.967 29 C 0.000 4.000 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.128 0.872 34 H 0.088 0.912 35 H 0.230 0.770 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.081 0.919 39 H 0.117 0.883 40 H 0.135 0.865 41 H 0.123 0.877 42 H 0.117 0.883 43 H 0.242 0.758 44 H 0.251 0.749 45 H 0.193 0.807 46 H 0.065 0.935 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.687 -25.813 -16.604 30.700 hybrid contribution -0.187 2.235 0.815 2.387 sum 0.501 -23.578 -15.789 28.381 Atomic orbital electron populations 1.22394 0.87171 1.02147 1.00259 1.61495 1.08676 1.12200 1.44330 1.21719 1.02101 0.89655 0.93643 1.20934 0.83542 0.82145 0.90665 1.90477 1.45158 1.65384 1.49207 1.41945 1.50243 1.11677 1.17564 1.19656 1.34223 0.96364 0.95773 0.90624 1.25981 0.96379 0.96641 1.02248 1.69666 1.38253 1.12619 1.35584 0.84915 0.78232 0.77915 0.77532 1.20084 1.19692 1.19482 1.22197 1.01075 0.91629 0.91201 1.22328 1.00404 0.93874 0.94179 0.89640 1.22769 1.04077 0.91275 0.97003 1.22949 1.03489 1.00370 0.78010 1.48488 1.70794 1.06729 1.08143 1.17788 0.76663 0.84656 0.84538 1.90822 1.51791 1.84277 1.19001 1.21603 1.11246 0.94686 0.97992 1.25518 0.85174 0.95232 0.94592 1.68716 1.14842 1.01430 1.39130 1.26049 0.85976 1.01651 0.83742 1.68659 1.15433 1.21231 1.19788 1.23589 0.84898 0.86829 1.01393 1.22167 1.00562 0.78197 0.99098 0.90668 0.93371 0.94749 0.87183 0.91171 0.77000 0.91367 0.89290 0.91867 0.88293 0.86520 0.87656 0.88304 0.75793 0.74899 0.80680 0.93473 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 8.98 127.69 1.15 1.99 16 2 N -0.54 -15.91 4.32 -927.06 -4.01 -19.91 16 3 C 0.06 1.95 5.45 85.56 0.47 2.42 16 4 C 0.44 20.80 7.47 87.66 0.66 21.46 16 5 O -0.62 -34.33 13.91 -3.05 -0.04 -34.37 16 6 N -0.58 -29.58 5.29 -306.98 -1.62 -31.21 16 7 C -0.33 -18.97 9.68 84.04 0.81 -18.15 16 8 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 9 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 10 N -0.92 -49.71 13.05 21.66 0.28 -49.43 16 11 Si 0.99 43.60 29.55 68.60 2.03 45.63 16 12 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 13 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 14 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 15 C 0.07 1.18 4.41 86.30 0.38 1.56 16 16 C -0.09 -1.33 2.90 -9.40 -0.03 -1.36 16 17 H 0.09 1.38 6.54 -2.38 -0.02 1.36 16 18 C -0.11 -0.67 6.42 31.78 0.20 -0.46 16 19 C 0.07 0.54 4.88 86.73 0.42 0.97 16 20 N -0.61 -11.42 3.33 -816.09 -2.71 -14.14 16 21 C 0.57 13.94 7.82 86.78 0.68 14.62 16 22 O -0.58 -19.76 16.77 -3.88 -0.07 -19.83 16 23 C -0.25 -4.58 5.90 -19.91 -0.12 -4.70 16 24 C 0.16 2.04 9.87 85.06 0.84 2.88 16 25 N -0.53 -7.11 10.42 -198.97 -2.07 -9.18 16 26 C 0.31 4.02 12.27 180.84 2.22 6.24 16 27 N -0.54 -9.47 10.42 -198.98 -2.07 -11.54 16 28 C 0.20 3.89 10.88 85.06 0.93 4.82 16 29 C 0.12 2.77 6.19 86.86 0.54 3.31 16 30 H 0.07 1.96 6.44 -2.39 -0.02 1.94 16 31 H 0.05 1.92 5.83 -2.38 -0.01 1.90 16 32 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.11 3.11 7.93 -2.39 -0.02 3.09 16 34 H 0.07 1.99 8.12 -2.38 -0.02 1.97 16 35 H 0.40 19.16 7.90 -92.71 -0.73 18.42 16 36 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 37 H 0.09 1.41 7.89 -2.39 -0.02 1.39 16 38 H 0.06 0.88 8.12 -2.39 -0.02 0.86 16 39 H 0.10 0.38 8.04 -2.39 -0.02 0.36 16 40 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 41 H 0.11 0.33 6.82 -2.39 -0.02 0.32 16 42 H 0.10 0.41 6.67 -2.39 -0.02 0.39 16 43 H 0.23 1.35 2.96 -3.25 -0.01 1.34 16 44 H 0.24 1.14 8.06 -2.91 -0.02 1.12 16 45 H 0.18 3.45 7.76 -2.91 -0.02 3.43 16 46 H 0.05 1.48 8.09 -2.39 -0.02 1.46 16 47 H 0.07 1.60 8.00 -2.39 -0.02 1.58 16 Total: -1.00 -81.55 383.91 -0.39 -81.94 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: 0.29 Total: 26.71 kcal Atomic # 6 Polarization: 25.73 SS G_CDS: 9.61 Total: 35.34 kcal Atomic # 7 Polarization: -123.21 SS G_CDS: -12.21 Total: -135.42 kcal Atomic # 8 Polarization: -54.09 SS G_CDS: -0.11 Total: -54.20 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -81.55 -0.39 -81.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494124348.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.245 kcal (2) G-P(sol) polarization free energy of solvation -81.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds