Wall clock time and date at job start Wed Apr 1 2020 05:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34776 * 120.00048 * 2 1 4 4 O 1.21281 * 120.00060 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00053 * 359.97438 * 3 2 1 6 6 C 1.52995 * 109.47385 * 180.02562 * 5 3 2 7 7 C 1.50700 * 109.47113 * 180.02562 * 6 5 3 8 8 C 1.38619 * 120.44887 * 124.72111 * 7 6 5 9 9 C 1.38580 * 118.39918 * 179.80158 * 8 7 6 10 10 N 1.32343 * 119.10137 * 0.47088 * 9 8 7 11 11 C 1.31777 * 120.82566 * 359.74948 * 10 9 8 12 12 N 1.31807 * 121.75036 * 0.02562 * 11 10 9 13 13 C 1.46499 * 119.99966 * 179.97438 * 2 1 3 14 14 C 1.53932 * 113.73412 * 323.27001 * 13 2 1 15 15 N 1.47959 * 86.18045 * 90.64001 * 14 13 2 16 16 C 1.46902 * 110.99905 * 137.58303 * 15 14 13 17 17 C 1.50699 * 109.47319 * 70.64321 * 16 15 14 18 18 O 1.21291 * 119.99712 * 359.97438 * 17 16 15 19 19 N 1.34772 * 120.00368 * 179.97438 * 17 16 15 20 20 C 1.37087 * 120.00565 * 179.97438 * 19 17 16 21 21 H 1.08006 * 119.99891 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00760 * 179.97438 * 20 19 17 23 23 N 1.31419 * 119.99436 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00409 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47198 * 60.00340 * 24 22 20 26 26 H 1.48504 * 109.46912 * 180.02562 * 24 22 20 27 27 H 1.48492 * 109.47049 * 299.99915 * 24 22 20 28 28 C 1.47957 * 90.76368 * 24.69138 * 15 14 13 29 29 H 1.09005 * 109.47173 * 270.00035 * 1 2 3 30 30 H 1.09001 * 109.47588 * 30.00029 * 1 2 3 31 31 H 1.09005 * 109.47125 * 150.00533 * 1 2 3 32 32 H 1.09000 * 109.46884 * 300.00687 * 5 3 2 33 33 H 1.09003 * 109.47210 * 60.00112 * 5 3 2 34 34 H 1.09003 * 109.46891 * 299.99923 * 6 5 3 35 35 H 1.08998 * 109.47097 * 60.00220 * 6 5 3 36 36 H 1.07997 * 120.79897 * 0.02562 * 8 7 6 37 37 H 1.07996 * 120.44384 * 180.21679 * 9 8 7 38 38 H 1.07998 * 119.12425 * 180.02562 * 11 10 9 39 39 H 1.09000 * 113.00735 * 191.63827 * 13 2 1 40 40 H 1.09004 * 113.75969 * 204.95796 * 14 13 2 41 41 H 1.08999 * 113.76302 * 336.32252 * 14 13 2 42 42 H 1.09007 * 109.46697 * 190.64055 * 16 15 14 43 43 H 1.09001 * 109.46915 * 310.63777 * 16 15 14 44 44 H 0.97011 * 119.99660 * 359.97438 * 19 17 16 45 45 H 0.97001 * 119.99535 * 180.02562 * 23 22 20 46 46 H 1.09000 * 113.75975 * 220.99328 * 28 15 14 47 47 H 1.08998 * 113.76273 * 89.62912 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3795 3.6352 -0.0011 7 6 1.6260 4.9403 -0.0011 8 6 1.8645 5.8892 0.9809 9 6 1.1506 7.0761 0.9379 10 7 0.2639 7.2593 -0.0274 11 6 0.0602 6.3326 -0.9419 12 7 0.7237 5.1937 -0.9351 13 6 2.1975 -1.2687 0.0006 14 6 1.5292 -2.3696 0.8438 15 7 0.8196 -2.7514 -0.3971 16 6 0.7813 -4.2116 -0.5536 17 6 -0.1521 -4.8024 0.4716 18 8 -0.7283 -4.0783 1.2557 19 7 -0.3465 -6.1352 0.5171 20 6 -1.1951 -6.6728 1.4499 21 1 -1.7083 -6.0281 2.1482 22 6 -1.3961 -8.0469 1.4966 23 7 -0.7721 -8.8313 0.6466 24 14 -2.5530 -8.7791 2.7673 25 1 -3.9165 -8.2237 2.5736 26 1 -2.5921 -10.2552 2.6087 27 1 -2.0696 -8.4409 4.1299 28 6 1.8971 -2.1582 -1.2194 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8901 -0.5138 32 1 0.7590 2.5298 -0.8908 33 1 0.7584 2.5303 0.8892 34 1 3.0062 3.5779 0.8889 35 1 3.0062 3.5771 -0.8911 36 1 2.5919 5.7092 1.7587 37 1 1.3127 7.8396 1.6843 38 1 -0.6698 6.5110 -1.7175 39 1 3.2615 -1.1463 0.2029 40 1 2.2232 -3.1289 1.2042 41 1 0.8726 -1.9867 1.6251 42 1 0.4269 -4.4606 -1.5539 43 1 1.7823 -4.6186 -0.4109 44 1 0.1141 -6.7143 -0.1103 45 1 -0.9126 -9.7905 0.6789 46 1 1.5344 -1.6063 -2.0866 47 1 2.6987 -2.8556 -1.4624 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499674848.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:00 Heat of formation + Delta-G solvation = 23.927756 kcal Electronic energy + Delta-G solvation = -29237.469044 eV Core-core repulsion = 25036.119506 eV Total energy + Delta-G solvation = -4201.349538 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.44531 -40.75248 -39.16894 -37.70843 -35.37179 -34.85827 -33.90126 -33.18334 -31.57957 -31.26816 -29.88555 -27.01241 -26.51767 -26.00471 -25.20411 -24.76488 -23.51416 -22.55384 -20.37270 -19.29977 -18.62935 -18.03814 -17.92740 -17.61223 -16.76977 -16.34435 -16.22104 -15.90504 -15.81243 -15.37047 -15.18388 -14.87431 -14.61624 -14.30040 -14.00427 -13.84117 -13.72502 -13.34916 -13.23931 -12.91203 -12.73929 -12.51561 -12.34001 -12.09627 -11.97314 -11.64215 -11.57313 -11.49049 -11.25738 -11.09632 -10.94511 -10.92425 -10.78737 -10.46639 -10.23710 -10.06792 -9.87830 -9.64012 -9.52303 -8.74116 -8.62771 -8.26404 -7.99281 -6.44394 -3.85372 0.48442 0.61981 2.47860 2.82421 3.17645 3.23751 3.27812 3.35753 3.59946 3.76859 3.85949 3.96678 3.98791 4.18505 4.37382 4.53162 4.61555 4.65162 4.69897 4.78429 4.85830 4.99897 5.07253 5.15306 5.19586 5.25999 5.35750 5.40504 5.47382 5.57134 5.62673 5.67068 5.67681 5.70165 5.77257 5.83876 5.96564 6.10469 6.12379 6.22063 6.52509 6.56917 6.57874 7.10243 7.34743 7.52080 7.66638 8.02333 8.04073 8.58126 9.14878 9.51098 10.02488 10.73180 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022991 B = 0.001656 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.559614 B =16900.338477 C =17541.312532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.587 5.587 3 C 0.516 3.484 4 O -0.549 6.549 5 C -0.129 4.129 6 C -0.057 4.057 7 C 0.181 3.819 8 C -0.224 4.224 9 C 0.149 3.851 10 N -0.528 5.528 11 C 0.297 3.703 12 N -0.518 5.518 13 C 0.110 3.890 14 C 0.014 3.986 15 N -0.452 5.452 16 C 0.009 3.991 17 C 0.443 3.557 18 O -0.581 6.581 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 C -0.012 4.012 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.149 0.851 37 H 0.168 0.832 38 H 0.197 0.803 39 H 0.108 0.892 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.055 0.945 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.090 0.910 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.961 25.336 -3.360 26.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.318 5.318 3 C 0.304 3.696 4 O -0.427 6.427 5 C -0.169 4.169 6 C -0.095 4.095 7 C 0.035 3.965 8 C -0.246 4.246 9 C -0.016 4.016 10 N -0.242 5.242 11 C 0.009 3.991 12 N -0.232 5.232 13 C 0.005 3.995 14 C -0.115 4.115 15 N -0.175 5.175 16 C -0.123 4.123 17 C 0.229 3.771 18 O -0.465 6.465 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.143 4.143 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.167 0.833 37 H 0.185 0.815 38 H 0.213 0.787 39 H 0.125 0.875 40 H 0.095 0.905 41 H 0.116 0.884 42 H 0.109 0.891 43 H 0.073 0.927 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.108 0.892 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.817 25.940 -3.661 26.835 hybrid contribution 0.917 -1.499 0.924 1.986 sum 6.735 24.441 -2.737 25.499 Atomic orbital electron populations 1.22039 0.78116 1.04505 1.02640 1.47469 1.07617 1.04600 1.72139 1.20605 0.87893 0.85331 0.75731 1.90682 1.13966 1.87537 1.50507 1.21563 0.98978 0.91042 1.05346 1.20382 0.96329 0.87398 1.05416 1.21773 0.90583 0.95611 0.88554 1.22849 1.03637 0.96325 1.01813 1.23259 0.88762 0.95361 0.94264 1.68426 1.18112 1.33378 1.04289 1.25023 0.94957 0.84262 0.94813 1.68258 1.07703 1.22167 1.25113 1.22483 0.97162 0.83311 0.96532 1.24167 0.96515 0.95604 0.95262 1.68398 1.35765 1.09565 1.03734 1.22471 0.99158 0.89970 1.00709 1.19672 0.86775 0.83104 0.87595 1.90511 1.52419 1.59748 1.43789 1.41866 1.41000 1.05149 1.31988 1.19637 1.20946 0.90887 1.11489 0.88003 1.25263 0.98334 0.96076 0.98228 1.69607 1.42845 1.05158 1.36649 0.85917 0.80326 0.77517 0.80455 1.19891 1.20960 1.19943 1.24476 0.94548 0.97339 0.97900 0.92499 0.91724 0.87632 0.87553 0.88893 0.88886 0.88385 0.83322 0.81456 0.78683 0.87451 0.90488 0.88392 0.89147 0.92671 0.77500 0.91806 0.89175 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.76 9.19 59.85 0.55 1.31 16 2 N -0.59 -6.95 3.09 -175.28 -0.54 -7.49 16 3 C 0.52 6.00 7.67 -10.98 -0.08 5.92 16 4 O -0.55 -7.94 15.47 5.56 0.09 -7.85 16 5 C -0.13 -1.10 4.12 -27.88 -0.11 -1.21 16 6 C -0.06 -0.45 4.94 -27.89 -0.14 -0.59 16 7 C 0.18 1.44 6.21 -82.24 -0.51 0.93 16 8 C -0.22 -1.41 9.80 -39.31 -0.39 -1.80 16 9 C 0.15 0.96 11.30 -17.20 -0.19 0.76 16 10 N -0.53 -4.42 10.44 -14.59 -0.15 -4.57 16 11 C 0.30 2.37 12.29 -92.16 -1.13 1.23 16 12 N -0.52 -4.62 10.04 -10.80 -0.11 -4.73 16 13 C 0.11 1.39 4.51 -69.63 -0.31 1.08 16 14 C 0.01 0.21 5.99 -2.77 -0.02 0.19 16 15 N -0.45 -6.94 4.08 -239.91 -0.98 -7.91 16 16 C 0.01 0.15 5.31 -4.98 -0.03 0.12 16 17 C 0.44 10.14 7.59 -10.99 -0.08 10.05 16 18 O -0.58 -15.11 15.12 5.55 0.08 -15.03 16 19 N -0.56 -14.01 5.29 -10.97 -0.06 -14.07 16 20 C -0.30 -8.25 9.68 -14.94 -0.14 -8.39 16 21 H 0.10 2.93 7.16 -52.48 -0.38 2.56 16 22 C 0.02 0.60 5.50 -17.46 -0.10 0.51 16 23 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 24 Si 0.93 20.86 29.55 -169.99 -5.02 15.83 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 C -0.01 -0.15 7.45 -2.77 -0.02 -0.17 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.55 6.44 -51.93 -0.33 0.22 16 31 H 0.11 1.38 6.07 -51.93 -0.32 1.06 16 32 H 0.11 0.87 7.24 -51.93 -0.38 0.50 16 33 H 0.09 0.71 8.11 -51.93 -0.42 0.29 16 34 H 0.09 0.68 7.90 -51.93 -0.41 0.27 16 35 H 0.10 0.85 8.10 -51.93 -0.42 0.43 16 36 H 0.15 0.57 8.01 -52.49 -0.42 0.15 16 37 H 0.17 0.55 8.06 -52.49 -0.42 0.13 16 38 H 0.20 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.11 1.38 7.25 -51.93 -0.38 1.00 16 40 H 0.08 1.13 7.78 -51.93 -0.40 0.73 16 41 H 0.10 1.63 7.77 -51.93 -0.40 1.22 16 42 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.06 0.84 7.69 -51.93 -0.40 0.44 16 44 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 45 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 47 H 0.08 0.85 7.79 -51.93 -0.40 0.44 16 LS Contribution 393.05 15.07 5.92 5.92 Total: -1.00 -33.83 393.05 -9.39 -43.22 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -6.63 Total: 10.28 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: -2.71 Total: 9.95 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: -1.11 Total: -62.32 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: 0.17 Total: -22.88 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.83 -9.39 -43.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499674848.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.148 kcal (2) G-P(sol) polarization free energy of solvation -33.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds