Wall clock time and date at job start Wed Apr 1 2020 05:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34776 * 120.00048 * 2 1 4 4 O 1.21281 * 120.00060 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00053 * 359.97438 * 3 2 1 6 6 C 1.52995 * 109.47385 * 180.02562 * 5 3 2 7 7 C 1.50700 * 109.47113 * 180.02562 * 6 5 3 8 8 C 1.38619 * 120.44887 * 124.72111 * 7 6 5 9 9 C 1.38580 * 118.39918 * 179.80158 * 8 7 6 10 10 N 1.32343 * 119.10137 * 0.47088 * 9 8 7 11 11 C 1.31777 * 120.82566 * 359.74948 * 10 9 8 12 12 N 1.31807 * 121.75036 * 0.02562 * 11 10 9 13 13 C 1.46499 * 119.99966 * 179.97438 * 2 1 3 14 14 C 1.53932 * 113.73412 * 323.27001 * 13 2 1 15 15 N 1.47959 * 86.18045 * 90.64001 * 14 13 2 16 16 C 1.46902 * 110.99905 * 137.58303 * 15 14 13 17 17 C 1.50699 * 109.47319 * 70.64321 * 16 15 14 18 18 O 1.21291 * 119.99712 * 359.97438 * 17 16 15 19 19 N 1.34772 * 120.00368 * 179.97438 * 17 16 15 20 20 C 1.37087 * 120.00565 * 179.97438 * 19 17 16 21 21 H 1.08006 * 119.99891 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00760 * 179.97438 * 20 19 17 23 23 N 1.31419 * 119.99436 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00409 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47198 * 60.00340 * 24 22 20 26 26 H 1.48504 * 109.46912 * 180.02562 * 24 22 20 27 27 H 1.48492 * 109.47049 * 299.99915 * 24 22 20 28 28 C 1.47957 * 90.76368 * 24.69138 * 15 14 13 29 29 H 1.09005 * 109.47173 * 270.00035 * 1 2 3 30 30 H 1.09001 * 109.47588 * 30.00029 * 1 2 3 31 31 H 1.09005 * 109.47125 * 150.00533 * 1 2 3 32 32 H 1.09000 * 109.46884 * 300.00687 * 5 3 2 33 33 H 1.09003 * 109.47210 * 60.00112 * 5 3 2 34 34 H 1.09003 * 109.46891 * 299.99923 * 6 5 3 35 35 H 1.08998 * 109.47097 * 60.00220 * 6 5 3 36 36 H 1.07997 * 120.79897 * 0.02562 * 8 7 6 37 37 H 1.07996 * 120.44384 * 180.21679 * 9 8 7 38 38 H 1.07998 * 119.12425 * 180.02562 * 11 10 9 39 39 H 1.09000 * 113.00735 * 191.63827 * 13 2 1 40 40 H 1.09004 * 113.75969 * 204.95796 * 14 13 2 41 41 H 1.08999 * 113.76302 * 336.32252 * 14 13 2 42 42 H 1.09007 * 109.46697 * 190.64055 * 16 15 14 43 43 H 1.09001 * 109.46915 * 310.63777 * 16 15 14 44 44 H 0.97011 * 119.99660 * 359.97438 * 19 17 16 45 45 H 0.97001 * 119.99535 * 180.02562 * 23 22 20 46 46 H 1.09000 * 113.75975 * 220.99328 * 28 15 14 47 47 H 1.08998 * 113.76273 * 89.62912 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3795 3.6352 -0.0011 7 6 1.6260 4.9403 -0.0011 8 6 1.8645 5.8892 0.9809 9 6 1.1506 7.0761 0.9379 10 7 0.2639 7.2593 -0.0274 11 6 0.0602 6.3326 -0.9419 12 7 0.7237 5.1937 -0.9351 13 6 2.1975 -1.2687 0.0006 14 6 1.5292 -2.3696 0.8438 15 7 0.8196 -2.7514 -0.3971 16 6 0.7813 -4.2116 -0.5536 17 6 -0.1521 -4.8024 0.4716 18 8 -0.7283 -4.0783 1.2557 19 7 -0.3465 -6.1352 0.5171 20 6 -1.1951 -6.6728 1.4499 21 1 -1.7083 -6.0281 2.1482 22 6 -1.3961 -8.0469 1.4966 23 7 -0.7721 -8.8313 0.6466 24 14 -2.5530 -8.7791 2.7673 25 1 -3.9165 -8.2237 2.5736 26 1 -2.5921 -10.2552 2.6087 27 1 -2.0696 -8.4409 4.1299 28 6 1.8971 -2.1582 -1.2194 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8901 -0.5138 32 1 0.7590 2.5298 -0.8908 33 1 0.7584 2.5303 0.8892 34 1 3.0062 3.5779 0.8889 35 1 3.0062 3.5771 -0.8911 36 1 2.5919 5.7092 1.7587 37 1 1.3127 7.8396 1.6843 38 1 -0.6698 6.5110 -1.7175 39 1 3.2615 -1.1463 0.2029 40 1 2.2232 -3.1289 1.2042 41 1 0.8726 -1.9867 1.6251 42 1 0.4269 -4.4606 -1.5539 43 1 1.7823 -4.6186 -0.4109 44 1 0.1141 -6.7143 -0.1103 45 1 -0.9126 -9.7905 0.6789 46 1 1.5344 -1.6063 -2.0866 47 1 2.6987 -2.8556 -1.4624 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499674848.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:57 Heat of formation + Delta-G solvation = 0.469231 kcal Electronic energy + Delta-G solvation = -29238.486282 eV Core-core repulsion = 25036.119506 eV Total energy + Delta-G solvation = -4202.366776 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.03012 -41.78722 -40.37563 -39.35735 -36.07780 -35.97812 -35.71910 -33.74128 -33.28826 -32.24870 -31.11337 -28.09167 -27.50915 -27.05155 -26.67965 -25.31051 -24.81689 -23.26785 -21.32574 -21.04826 -19.91760 -19.58630 -18.63451 -18.38939 -17.84937 -17.50055 -17.24008 -16.92542 -16.60617 -16.36291 -16.34806 -16.30154 -15.78867 -15.51777 -15.20123 -14.99900 -14.76809 -14.40900 -14.27586 -13.88196 -13.80288 -13.54563 -13.45862 -13.32516 -13.19685 -13.00098 -12.90129 -12.69786 -12.43690 -12.27723 -12.15505 -12.10765 -11.92384 -11.78014 -11.53508 -11.48567 -10.90327 -10.52019 -10.31366 -10.20082 -10.00780 -9.72967 -9.62080 -8.46327 -5.94779 -0.03353 0.09972 1.39268 1.41294 1.51888 1.55802 1.91688 2.06320 2.28504 2.79395 2.81897 3.04365 3.20514 3.27191 3.31636 3.42212 3.53054 3.71462 3.79383 4.02889 4.07302 4.16226 4.22494 4.25168 4.27461 4.36993 4.45354 4.47289 4.55407 4.61933 4.63115 4.64985 4.71117 4.77470 4.82956 4.91381 4.97465 5.06896 5.17361 5.32734 5.41049 5.46961 5.55990 5.84694 6.05079 6.06160 6.41336 6.60505 7.10901 7.13148 7.13533 7.57032 8.12442 8.70771 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.022991 B = 0.001656 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.559614 B =16900.338477 C =17541.312532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.590 5.590 3 C 0.516 3.484 4 O -0.578 6.578 5 C -0.119 4.119 6 C -0.050 4.050 7 C 0.167 3.833 8 C -0.221 4.221 9 C 0.144 3.856 10 N -0.548 5.548 11 C 0.286 3.714 12 N -0.538 5.538 13 C 0.118 3.882 14 C 0.012 3.988 15 N -0.467 5.467 16 C 0.021 3.979 17 C 0.442 3.558 18 O -0.616 6.616 19 N -0.575 5.575 20 C -0.332 4.332 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.992 3.008 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.272 1.272 28 C 0.000 4.000 29 H 0.050 0.950 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.174 0.826 37 H 0.198 0.802 38 H 0.215 0.785 39 H 0.108 0.892 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.395 0.605 45 H 0.277 0.723 46 H 0.100 0.900 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.359 26.237 -3.582 27.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.320 5.320 3 C 0.306 3.694 4 O -0.458 6.458 5 C -0.159 4.159 6 C -0.089 4.089 7 C 0.021 3.979 8 C -0.242 4.242 9 C -0.021 4.021 10 N -0.263 5.263 11 C -0.001 4.001 12 N -0.253 5.253 13 C 0.013 3.987 14 C -0.118 4.118 15 N -0.190 5.190 16 C -0.111 4.111 17 C 0.229 3.771 18 O -0.502 6.502 19 N -0.212 5.212 20 C -0.462 4.462 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.815 3.185 25 H -0.198 1.198 26 H -0.196 1.196 27 H -0.198 1.198 28 C -0.129 4.129 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.130 0.870 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.105 0.895 36 H 0.191 0.809 37 H 0.215 0.785 38 H 0.231 0.769 39 H 0.126 0.874 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.127 0.873 43 H 0.096 0.904 44 H 0.229 0.771 45 H 0.086 0.914 46 H 0.118 0.882 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.222 26.844 -3.905 27.831 hybrid contribution 0.817 -1.694 1.004 2.132 sum 7.039 25.150 -2.901 26.277 Atomic orbital electron populations 1.21996 0.77555 1.04821 1.02344 1.47567 1.07947 1.04536 1.71978 1.21095 0.87635 0.85979 0.74683 1.90668 1.15328 1.87953 1.51872 1.21527 0.98884 0.89424 1.06099 1.20299 0.96057 0.87288 1.05224 1.21853 0.90851 0.95997 0.89194 1.23119 1.03674 0.95700 1.01716 1.23813 0.87933 0.96098 0.94225 1.68472 1.19029 1.33739 1.05015 1.25424 0.95297 0.84063 0.95356 1.68246 1.08420 1.22798 1.25797 1.22358 0.96968 0.83322 0.96080 1.24100 0.96192 0.96648 0.94874 1.68427 1.37623 1.08335 1.04640 1.22377 0.98567 0.90896 0.99220 1.20716 0.86371 0.82263 0.87726 1.90486 1.53822 1.60424 1.45441 1.41941 1.41241 1.06060 1.31993 1.19606 1.22541 0.91452 1.12602 0.90325 1.26016 0.99466 0.95906 0.99880 1.69670 1.43458 1.05511 1.37488 0.85009 0.78225 0.77215 0.78017 1.19760 1.19567 1.19772 1.24513 0.93889 0.97000 0.97518 0.93126 0.89064 0.89563 0.86997 0.87690 0.88264 0.89461 0.80861 0.78543 0.76901 0.87385 0.90555 0.90862 0.87299 0.90376 0.77083 0.91361 0.88170 0.88335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.58 9.19 127.77 1.17 2.76 16 2 N -0.59 -13.39 3.09 -826.85 -2.56 -15.95 16 3 C 0.52 11.44 7.67 87.66 0.67 12.11 16 4 O -0.58 -16.24 15.47 -3.03 -0.05 -16.29 16 5 C -0.12 -1.86 4.12 29.85 0.12 -1.74 16 6 C -0.05 -0.74 4.94 29.85 0.15 -0.59 16 7 C 0.17 2.44 6.21 42.58 0.26 2.71 16 8 C -0.22 -2.34 9.80 22.44 0.22 -2.12 16 9 C 0.14 1.57 11.30 84.70 0.96 2.53 16 10 N -0.55 -8.49 10.44 -200.06 -2.09 -10.58 16 11 C 0.29 4.30 12.29 180.89 2.22 6.52 16 12 N -0.54 -9.08 10.04 -188.07 -1.89 -10.97 16 13 C 0.12 2.87 4.51 46.56 0.21 3.08 16 14 C 0.01 0.34 5.99 86.40 0.52 0.86 16 15 N -0.47 -13.89 4.08 -912.93 -3.72 -17.61 16 16 C 0.02 0.68 5.31 85.56 0.45 1.14 16 17 C 0.44 20.39 7.59 87.66 0.67 21.05 16 18 O -0.62 -32.86 15.12 -3.06 -0.05 -32.91 16 19 N -0.57 -28.99 5.29 -307.00 -1.62 -30.62 16 20 C -0.33 -18.66 9.68 84.04 0.81 -17.84 16 21 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 22 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 23 N -0.92 -49.30 13.05 21.66 0.28 -49.02 16 24 Si 0.99 42.64 29.55 68.60 2.03 44.67 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 28 C 0.00 0.00 7.45 86.41 0.64 0.65 16 29 H 0.05 1.12 8.14 -2.38 -0.02 1.11 16 30 H 0.09 1.40 6.44 -2.39 -0.02 1.39 16 31 H 0.09 2.21 6.07 -2.38 -0.01 2.20 16 32 H 0.11 1.66 7.24 -2.39 -0.02 1.64 16 33 H 0.10 1.41 8.11 -2.39 -0.02 1.39 16 34 H 0.10 1.31 7.90 -2.39 -0.02 1.29 16 35 H 0.09 1.47 8.10 -2.39 -0.02 1.45 16 36 H 0.17 0.86 8.01 -2.91 -0.02 0.84 16 37 H 0.20 0.77 8.06 -2.91 -0.02 0.75 16 38 H 0.21 2.01 8.06 -2.91 -0.02 1.98 16 39 H 0.11 2.66 7.25 -2.39 -0.02 2.64 16 40 H 0.08 2.24 7.78 -2.38 -0.02 2.22 16 41 H 0.07 2.52 7.77 -2.39 -0.02 2.50 16 42 H 0.11 3.20 8.14 -2.38 -0.02 3.18 16 43 H 0.08 2.22 7.69 -2.39 -0.02 2.20 16 44 H 0.40 18.99 7.90 -92.70 -0.73 18.26 16 45 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 46 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 47 H 0.10 1.83 7.79 -2.39 -0.02 1.81 16 Total: -1.00 -73.84 393.05 0.17 -73.67 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: 0.27 Total: 34.70 kcal Atomic # 6 Polarization: 21.34 SS G_CDS: 9.55 Total: 30.89 kcal Atomic # 7 Polarization: -123.15 SS G_CDS: -11.59 Total: -134.74 kcal Atomic # 8 Polarization: -49.10 SS G_CDS: -0.09 Total: -49.20 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -73.84 0.17 -73.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499674848.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.141 kcal (2) G-P(sol) polarization free energy of solvation -73.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds