Wall clock time and date at job start Wed Apr 1 2020 05:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34776 * 119.99961 * 2 1 4 4 O 1.21601 * 120.00011 * 175.66660 * 3 2 1 5 5 C 1.47433 * 120.00064 * 355.66276 * 3 2 1 6 6 C 1.41201 * 126.43693 * 35.18577 * 5 3 2 7 7 N 1.30279 * 108.02888 * 179.81509 * 6 5 3 8 8 N 1.40516 * 109.02103 * 0.34158 * 7 6 5 9 9 C 1.34025 * 108.16125 * 359.89038 * 8 7 6 10 10 C 1.51397 * 110.33633 * 179.72433 * 9 8 7 11 11 C 1.54567 * 104.14583 * 343.55285 * 10 9 8 12 12 C 1.47251 * 140.81935 * 180.02562 * 8 7 6 13 13 C 1.46500 * 120.00176 * 179.97438 * 2 1 3 14 14 C 1.53520 * 114.17120 * 60.00062 * 13 2 1 15 15 N 1.47473 * 87.93164 * 220.33273 * 14 13 2 16 16 C 1.46899 * 110.99970 * 138.70558 * 15 14 13 17 17 C 1.50703 * 109.47072 * 169.99453 * 16 15 14 18 18 O 1.21296 * 120.00305 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00014 * 179.97438 * 17 16 15 20 20 C 1.37090 * 120.00317 * 180.02562 * 19 17 16 21 21 H 1.08005 * 120.00049 * 0.02562 * 20 19 17 22 22 C 1.38947 * 120.00499 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99944 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00419 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46994 * 89.99494 * 24 22 20 26 26 H 1.48494 * 109.47370 * 209.99758 * 24 22 20 27 27 H 1.48497 * 109.46758 * 329.99870 * 24 22 20 28 28 C 1.47471 * 87.84114 * 27.00851 * 15 14 13 29 29 H 1.08996 * 109.47313 * 275.35497 * 1 2 3 30 30 H 1.08996 * 109.47315 * 35.35755 * 1 2 3 31 31 H 1.09005 * 109.47104 * 155.35312 * 1 2 3 32 32 H 1.08001 * 125.98519 * 359.95020 * 6 5 3 33 33 H 1.08995 * 110.49492 * 102.21652 * 10 9 8 34 34 H 1.09003 * 110.49464 * 224.88689 * 10 9 8 35 35 H 1.09005 * 110.98623 * 266.92288 * 11 10 9 36 36 H 1.09001 * 111.02109 * 143.12572 * 11 10 9 37 37 H 1.09000 * 110.22667 * 316.04959 * 12 8 7 38 38 H 1.08999 * 110.22928 * 77.91803 * 12 8 7 39 39 H 1.08998 * 113.25566 * 192.95456 * 13 2 1 40 40 H 1.08994 * 113.47171 * 105.55687 * 14 13 2 41 41 H 1.09004 * 113.46817 * 335.09796 * 14 13 2 42 42 H 1.08999 * 109.47439 * 49.99563 * 16 15 14 43 43 H 1.09000 * 109.47116 * 289.99493 * 16 15 14 44 44 H 0.97005 * 120.00156 * 0.02562 * 19 17 16 45 45 H 0.97001 * 120.00070 * 180.02562 * 23 22 20 46 46 H 1.09005 * 113.47611 * 87.75764 * 28 15 14 47 47 H 1.08999 * 113.48309 * 218.22428 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3522 1.1687 0.0796 5 6 1.4048 2.4422 -0.0966 6 6 0.1415 2.7273 0.4661 7 7 -0.1658 3.9570 0.1648 8 7 0.8705 4.5127 -0.6044 9 6 1.8212 3.5809 -0.7599 10 6 2.9629 4.1276 -1.5904 11 6 2.3705 5.3856 -2.2653 12 6 1.2439 5.7662 -1.2809 13 6 2.1975 -1.2687 0.0006 14 6 1.9054 -2.1638 -1.2120 15 7 1.9118 -3.3180 -0.2941 16 6 0.8295 -4.2562 -0.6205 17 6 1.0128 -5.5281 0.1669 18 8 1.9522 -5.6417 0.9257 19 7 0.1322 -6.5390 0.0287 20 6 0.2985 -7.6958 0.7453 21 1 1.1351 -7.7969 1.4210 22 6 -0.6090 -8.7382 0.6025 23 7 -1.6271 -8.6150 -0.2192 24 14 -0.3819 -10.3148 1.5784 25 1 -1.0956 -10.2010 2.8757 26 1 -0.9344 -11.4578 0.8081 27 1 1.0648 -10.5387 1.8274 28 6 1.5043 -2.3944 0.7809 29 1 -0.3634 0.0959 1.0231 30 1 -0.3634 0.8381 -0.5947 31 1 -0.3633 -0.9341 -0.4286 32 1 -0.4630 2.0461 1.0466 33 1 3.8042 4.3973 -0.9521 34 1 3.2705 3.4004 -2.3419 35 1 1.9658 5.1471 -3.2490 36 1 3.1141 6.1797 -2.3334 37 1 0.3894 6.1704 -1.8238 38 1 1.6062 6.4933 -0.5541 39 1 3.2578 -1.1533 0.2250 40 1 2.7149 -2.1844 -1.9415 41 1 0.9325 -1.9756 -1.6662 42 1 0.8537 -4.4822 -1.6865 43 1 -0.1302 -3.8065 -0.3661 44 1 -0.6194 -6.4481 -0.5779 45 1 -2.2609 -9.3426 -0.3187 46 1 0.4245 -2.2679 0.8586 47 1 1.9741 -2.6106 1.7405 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499685854.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:45 Heat of formation + Delta-G solvation = 78.622207 kcal Electronic energy + Delta-G solvation = -29791.192346 eV Core-core repulsion = 25592.214537 eV Total energy + Delta-G solvation = -4198.977809 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -42.27573 -40.69132 -38.88246 -37.66343 -36.83399 -35.02451 -33.84622 -31.59997 -31.21789 -30.03154 -29.92563 -27.78124 -27.28507 -25.88175 -25.44181 -23.84462 -22.78647 -22.13198 -21.06904 -19.67408 -19.33706 -18.92513 -17.89232 -17.51302 -17.11107 -16.64491 -16.05800 -15.78641 -15.30593 -15.05948 -14.82367 -14.74201 -14.57365 -14.20769 -14.15734 -13.97705 -13.74925 -13.64876 -13.24377 -13.03698 -12.79559 -12.61655 -12.50199 -12.33289 -12.21841 -12.18204 -11.77260 -11.63499 -11.46235 -11.26995 -11.05984 -10.84531 -10.66980 -10.36958 -10.18827 -9.98176 -9.75040 -9.47200 -8.97127 -8.80609 -8.68976 -8.18607 -7.93101 -6.38994 -3.79496 1.22040 1.73780 1.88198 2.74931 3.06861 3.19946 3.28340 3.34814 3.46957 3.90120 3.93357 4.04318 4.09013 4.15744 4.28650 4.40923 4.49481 4.63843 4.77976 4.82260 4.86182 4.91419 4.95831 4.99832 5.12968 5.17080 5.21391 5.23950 5.31532 5.32365 5.36660 5.40583 5.48437 5.63956 5.68665 5.78214 5.94386 6.03111 6.10027 6.23847 6.26571 6.42092 6.53492 7.14280 7.23125 7.29180 7.58039 8.09073 8.09994 8.65338 9.21633 9.57663 10.10372 10.78944 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.030991 B = 0.001761 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.263114 B =15900.074052 C =16250.757112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.600 5.600 3 C 0.598 3.402 4 O -0.541 6.541 5 C -0.276 4.276 6 C 0.082 3.918 7 N -0.276 5.276 8 N -0.384 5.384 9 C 0.131 3.869 10 C -0.071 4.071 11 C -0.133 4.133 12 C 0.125 3.875 13 C 0.120 3.880 14 C -0.019 4.019 15 N -0.434 5.434 16 C 0.012 3.988 17 C 0.447 3.553 18 O -0.573 6.573 19 N -0.568 5.568 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.904 5.904 24 Si 0.930 3.070 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.270 1.270 28 C -0.005 4.005 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.199 0.801 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.134 0.866 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.059 0.941 44 H 0.391 0.609 45 H 0.271 0.729 46 H 0.073 0.927 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.637 30.446 -6.623 31.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.332 5.332 3 C 0.387 3.613 4 O -0.418 6.418 5 C -0.291 4.291 6 C -0.105 4.105 7 N -0.094 5.094 8 N -0.163 5.163 9 C -0.003 4.003 10 C -0.110 4.110 11 C -0.171 4.171 12 C 0.005 3.995 13 C 0.016 3.984 14 C -0.149 4.149 15 N -0.156 5.156 16 C -0.121 4.121 17 C 0.232 3.768 18 O -0.456 6.456 19 N -0.205 5.205 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.135 4.135 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.216 0.784 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.109 0.891 36 H 0.124 0.876 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.152 0.848 40 H 0.109 0.891 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.077 0.923 44 H 0.224 0.776 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.309 30.907 -5.921 31.554 hybrid contribution -1.066 -1.156 -0.073 1.575 sum 1.242 29.751 -5.993 30.374 Atomic orbital electron populations 1.22044 0.79815 1.03579 1.01912 1.47600 1.06740 1.05426 1.73439 1.17304 0.86342 0.82312 0.75385 1.90768 1.13636 1.87256 1.50124 1.19373 0.99313 0.95500 1.14881 1.24335 0.94337 0.93352 0.98480 1.77234 1.08854 1.10199 1.13136 1.50099 1.14448 1.11941 1.39823 1.22449 0.91850 0.89784 0.96200 1.21012 0.94794 0.96825 0.98343 1.22869 0.97174 0.98412 0.98685 1.22479 0.99040 0.82929 0.95030 1.22791 0.98624 0.80299 0.96637 1.24408 1.01981 0.91190 0.97333 1.68772 1.37088 1.06044 1.03674 1.22492 0.93299 0.95195 1.01072 1.19652 0.85348 0.85025 0.86824 1.90535 1.32535 1.81827 1.40690 1.41864 1.24919 1.13643 1.40073 1.19700 1.10920 0.91001 1.21048 0.87949 1.25246 0.95520 0.99692 0.97552 1.69611 1.14094 1.34001 1.36840 0.85861 0.78776 0.80595 0.79087 1.20461 1.20959 1.19413 1.24369 0.99485 0.90811 0.98863 0.92059 0.90502 0.90677 0.78421 0.87679 0.87995 0.89141 0.87571 0.88551 0.88843 0.84841 0.89123 0.91243 0.89293 0.92334 0.77588 0.91951 0.90931 0.88705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.56 7.77 59.84 0.47 1.03 16 2 N -0.60 -6.75 3.11 -174.89 -0.54 -7.29 16 3 C 0.60 7.66 7.59 -12.52 -0.10 7.57 16 4 O -0.54 -8.67 16.56 5.28 0.09 -8.58 16 5 C -0.28 -3.02 5.42 -105.04 -0.57 -3.59 16 6 C 0.08 0.79 9.69 -17.09 -0.17 0.62 16 7 N -0.28 -2.95 12.64 30.81 0.39 -2.56 16 8 N -0.38 -3.42 4.81 -55.13 -0.27 -3.68 16 9 C 0.13 1.24 7.46 -81.30 -0.61 0.63 16 10 C -0.07 -0.41 6.86 -26.72 -0.18 -0.60 16 11 C -0.13 -0.33 7.18 -25.19 -0.18 -0.51 16 12 C 0.13 0.54 7.78 -2.91 -0.02 0.52 16 13 C 0.12 1.56 4.57 -67.71 -0.31 1.25 16 14 C -0.02 -0.24 7.23 -7.55 -0.05 -0.30 16 15 N -0.43 -7.30 5.82 -246.11 -1.43 -8.73 16 16 C 0.01 0.21 5.30 -4.97 -0.03 0.18 16 17 C 0.45 10.73 7.85 -10.98 -0.09 10.64 16 18 O -0.57 -16.06 16.01 5.54 0.09 -15.97 16 19 N -0.57 -14.50 5.29 -10.96 -0.06 -14.56 16 20 C -0.30 -8.38 9.68 -14.94 -0.14 -8.52 16 21 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 24 Si 0.93 21.26 29.55 -169.99 -5.02 16.23 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 C -0.01 -0.08 7.11 -7.55 -0.05 -0.13 16 29 H 0.06 0.41 7.28 -51.93 -0.38 0.03 16 30 H 0.08 0.55 5.82 -51.93 -0.30 0.25 16 31 H 0.07 0.59 5.98 -51.93 -0.31 0.28 16 32 H 0.20 1.35 6.12 -52.49 -0.32 1.03 16 33 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 36 H 0.11 0.01 8.14 -51.93 -0.42 -0.41 16 37 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.13 1.96 7.26 -51.93 -0.38 1.58 16 40 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.07 0.77 6.81 -51.93 -0.35 0.42 16 42 H 0.09 1.43 8.08 -51.93 -0.42 1.01 16 43 H 0.06 0.89 7.30 -51.93 -0.38 0.52 16 44 H 0.39 9.48 7.90 -40.82 -0.32 9.15 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.07 0.93 5.72 -51.93 -0.30 0.63 16 47 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 LS Contribution 384.02 15.07 5.79 5.79 Total: -1.00 -37.51 384.02 -8.73 -46.24 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -6.35 Total: 7.80 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: -2.13 Total: 9.26 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: -1.19 Total: -60.77 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: 0.18 Total: -24.55 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.51 -8.73 -46.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499685854.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.863 kcal (2) G-P(sol) polarization free energy of solvation -37.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds