Wall clock time and date at job start Wed Apr 1 2020 05:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34776 * 119.99961 * 2 1 4 4 O 1.21601 * 120.00011 * 175.66660 * 3 2 1 5 5 C 1.47433 * 120.00064 * 355.66276 * 3 2 1 6 6 C 1.41201 * 126.43693 * 35.18577 * 5 3 2 7 7 N 1.30279 * 108.02888 * 179.81509 * 6 5 3 8 8 N 1.40516 * 109.02103 * 0.34158 * 7 6 5 9 9 C 1.34025 * 108.16125 * 359.89038 * 8 7 6 10 10 C 1.51397 * 110.33633 * 179.72433 * 9 8 7 11 11 C 1.54567 * 104.14583 * 343.55285 * 10 9 8 12 12 C 1.47251 * 140.81935 * 180.02562 * 8 7 6 13 13 C 1.46500 * 120.00176 * 179.97438 * 2 1 3 14 14 C 1.53520 * 114.17120 * 60.00062 * 13 2 1 15 15 N 1.47473 * 87.93164 * 220.33273 * 14 13 2 16 16 C 1.46899 * 110.99970 * 138.70558 * 15 14 13 17 17 C 1.50703 * 109.47072 * 169.99453 * 16 15 14 18 18 O 1.21296 * 120.00305 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00014 * 179.97438 * 17 16 15 20 20 C 1.37090 * 120.00317 * 180.02562 * 19 17 16 21 21 H 1.08005 * 120.00049 * 0.02562 * 20 19 17 22 22 C 1.38947 * 120.00499 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99944 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00419 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46994 * 89.99494 * 24 22 20 26 26 H 1.48494 * 109.47370 * 209.99758 * 24 22 20 27 27 H 1.48497 * 109.46758 * 329.99870 * 24 22 20 28 28 C 1.47471 * 87.84114 * 27.00851 * 15 14 13 29 29 H 1.08996 * 109.47313 * 275.35497 * 1 2 3 30 30 H 1.08996 * 109.47315 * 35.35755 * 1 2 3 31 31 H 1.09005 * 109.47104 * 155.35312 * 1 2 3 32 32 H 1.08001 * 125.98519 * 359.95020 * 6 5 3 33 33 H 1.08995 * 110.49492 * 102.21652 * 10 9 8 34 34 H 1.09003 * 110.49464 * 224.88689 * 10 9 8 35 35 H 1.09005 * 110.98623 * 266.92288 * 11 10 9 36 36 H 1.09001 * 111.02109 * 143.12572 * 11 10 9 37 37 H 1.09000 * 110.22667 * 316.04959 * 12 8 7 38 38 H 1.08999 * 110.22928 * 77.91803 * 12 8 7 39 39 H 1.08998 * 113.25566 * 192.95456 * 13 2 1 40 40 H 1.08994 * 113.47171 * 105.55687 * 14 13 2 41 41 H 1.09004 * 113.46817 * 335.09796 * 14 13 2 42 42 H 1.08999 * 109.47439 * 49.99563 * 16 15 14 43 43 H 1.09000 * 109.47116 * 289.99493 * 16 15 14 44 44 H 0.97005 * 120.00156 * 0.02562 * 19 17 16 45 45 H 0.97001 * 120.00070 * 180.02562 * 23 22 20 46 46 H 1.09005 * 113.47611 * 87.75764 * 28 15 14 47 47 H 1.08999 * 113.48309 * 218.22428 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3522 1.1687 0.0796 5 6 1.4048 2.4422 -0.0966 6 6 0.1415 2.7273 0.4661 7 7 -0.1658 3.9570 0.1648 8 7 0.8705 4.5127 -0.6044 9 6 1.8212 3.5809 -0.7599 10 6 2.9629 4.1276 -1.5904 11 6 2.3705 5.3856 -2.2653 12 6 1.2439 5.7662 -1.2809 13 6 2.1975 -1.2687 0.0006 14 6 1.9054 -2.1638 -1.2120 15 7 1.9118 -3.3180 -0.2941 16 6 0.8295 -4.2562 -0.6205 17 6 1.0128 -5.5281 0.1669 18 8 1.9522 -5.6417 0.9257 19 7 0.1322 -6.5390 0.0287 20 6 0.2985 -7.6958 0.7453 21 1 1.1351 -7.7969 1.4210 22 6 -0.6090 -8.7382 0.6025 23 7 -1.6271 -8.6150 -0.2192 24 14 -0.3819 -10.3148 1.5784 25 1 -1.0956 -10.2010 2.8757 26 1 -0.9344 -11.4578 0.8081 27 1 1.0648 -10.5387 1.8274 28 6 1.5043 -2.3944 0.7809 29 1 -0.3634 0.0959 1.0231 30 1 -0.3634 0.8381 -0.5947 31 1 -0.3633 -0.9341 -0.4286 32 1 -0.4630 2.0461 1.0466 33 1 3.8042 4.3973 -0.9521 34 1 3.2705 3.4004 -2.3419 35 1 1.9658 5.1471 -3.2490 36 1 3.1141 6.1797 -2.3334 37 1 0.3894 6.1704 -1.8238 38 1 1.6062 6.4933 -0.5541 39 1 3.2578 -1.1533 0.2250 40 1 2.7149 -2.1844 -1.9415 41 1 0.9325 -1.9756 -1.6662 42 1 0.8537 -4.4822 -1.6865 43 1 -0.1302 -3.8065 -0.3661 44 1 -0.6194 -6.4481 -0.5779 45 1 -2.2609 -9.3426 -0.3187 46 1 0.4245 -2.2679 0.8586 47 1 1.9741 -2.6106 1.7405 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499685854.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:44 Heat of formation + Delta-G solvation = 48.430548 kcal Electronic energy + Delta-G solvation = -29792.501554 eV Core-core repulsion = 25592.214537 eV Total energy + Delta-G solvation = -4200.287017 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.92736 -41.79811 -40.13584 -39.34371 -37.35960 -36.09388 -35.80005 -33.28915 -32.31287 -31.23419 -30.47107 -28.49723 -28.08093 -27.21243 -26.87589 -25.28496 -23.30556 -22.93763 -21.75966 -21.02592 -20.58441 -19.98307 -19.78945 -18.35764 -17.87473 -17.69520 -17.50709 -16.87028 -16.52727 -16.31474 -16.00126 -15.74644 -15.59913 -15.45031 -15.30266 -14.90279 -14.61284 -14.51133 -14.17131 -14.09174 -13.92924 -13.68584 -13.59644 -13.48590 -13.10053 -13.01736 -12.95218 -12.78081 -12.51345 -12.41149 -12.13413 -12.09326 -12.02625 -11.94034 -11.88941 -11.48936 -10.96280 -10.38290 -10.34525 -9.99586 -9.80251 -9.75887 -9.54689 -8.45654 -5.93978 0.51399 1.11946 1.23152 1.38314 1.42001 1.54648 1.84277 2.07375 2.18699 2.30296 2.88207 3.04908 3.20506 3.37143 3.41773 3.48179 3.63388 3.70454 3.86259 3.91992 4.09835 4.15768 4.16674 4.26514 4.29558 4.32434 4.38943 4.48188 4.53082 4.54588 4.58128 4.69526 4.71796 4.78716 4.82843 4.90462 4.97866 5.00116 5.07428 5.31518 5.34448 5.42035 5.48908 5.66894 5.88429 6.07761 6.36470 6.58183 6.62582 7.14845 7.15753 7.58307 8.15458 8.71701 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.030991 B = 0.001761 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.263114 B =15900.074052 C =16250.757112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.595 5.595 3 C 0.596 3.404 4 O -0.584 6.584 5 C -0.304 4.304 6 C 0.088 3.912 7 N -0.306 5.306 8 N -0.384 5.384 9 C 0.123 3.877 10 C -0.076 4.076 11 C -0.115 4.115 12 C 0.113 3.887 13 C 0.131 3.869 14 C -0.004 4.004 15 N -0.472 5.472 16 C 0.026 3.974 17 C 0.441 3.559 18 O -0.620 6.620 19 N -0.574 5.574 20 C -0.333 4.333 21 H 0.076 0.924 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.270 1.270 26 H -0.270 1.270 27 H -0.276 1.276 28 C -0.003 4.003 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.220 0.780 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.137 0.863 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.111 0.889 43 H 0.091 0.909 44 H 0.397 0.603 45 H 0.277 0.723 46 H 0.096 0.904 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.182 32.019 -7.935 32.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.326 5.326 3 C 0.387 3.613 4 O -0.465 6.465 5 C -0.319 4.319 6 C -0.099 4.099 7 N -0.124 5.124 8 N -0.164 5.164 9 C -0.012 4.012 10 C -0.115 4.115 11 C -0.153 4.153 12 C -0.006 4.006 13 C 0.026 3.974 14 C -0.134 4.134 15 N -0.195 5.195 16 C -0.106 4.106 17 C 0.229 3.771 18 O -0.506 6.506 19 N -0.212 5.212 20 C -0.463 4.463 21 H 0.094 0.906 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.196 1.196 26 H -0.194 1.194 27 H -0.201 1.201 28 C -0.133 4.133 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.236 0.764 33 H 0.126 0.874 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.155 0.845 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.111 0.889 41 H 0.116 0.884 42 H 0.129 0.871 43 H 0.108 0.892 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.114 0.886 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.791 32.515 -7.263 33.325 hybrid contribution -0.589 -1.558 0.331 1.699 sum 0.202 30.956 -6.932 31.723 Atomic orbital electron populations 1.22299 0.77562 1.04607 1.03425 1.47601 1.08003 1.04279 1.72673 1.17612 0.85927 0.83195 0.74577 1.90736 1.15516 1.87889 1.52346 1.19375 1.00266 0.95314 1.16964 1.24636 0.93898 0.93340 0.97984 1.77144 1.10233 1.10740 1.14288 1.50511 1.13667 1.13054 1.39131 1.23036 0.92865 0.89537 0.95723 1.21193 0.93951 0.98212 0.98110 1.22916 0.96887 0.97447 0.98098 1.22939 1.00253 0.81694 0.95697 1.22403 0.97534 0.80959 0.96535 1.24387 1.03547 0.88792 0.96669 1.68703 1.37426 1.07619 1.05716 1.22372 0.95089 0.92246 1.00880 1.20808 0.83821 0.86394 0.86125 1.90502 1.34288 1.83040 1.42768 1.41920 1.25564 1.13596 1.40167 1.19633 1.11233 0.93046 1.22384 0.90632 1.25996 0.94871 1.02128 0.98170 1.69662 1.14242 1.35028 1.37098 0.84954 0.78334 0.77092 0.78113 1.19589 1.19431 1.20054 1.24387 1.00725 0.90775 0.97413 0.90374 0.89337 0.89703 0.76431 0.87420 0.88176 0.88227 0.84516 0.87162 0.87447 0.87238 0.88910 0.88427 0.87141 0.89169 0.76913 0.91309 0.88603 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.87 7.77 127.77 0.99 1.86 16 2 N -0.59 -12.85 3.11 -825.47 -2.57 -15.42 16 3 C 0.60 15.35 7.59 86.67 0.66 16.01 16 4 O -0.58 -19.43 16.56 -4.03 -0.07 -19.50 16 5 C -0.30 -6.53 5.42 -20.14 -0.11 -6.64 16 6 C 0.09 1.60 9.69 85.65 0.83 2.43 16 7 N -0.31 -6.20 12.64 -56.42 -0.71 -6.91 16 8 N -0.38 -6.32 4.81 -328.34 -1.58 -7.90 16 9 C 0.12 2.24 7.46 42.44 0.32 2.56 16 10 C -0.08 -0.78 6.86 30.60 0.21 -0.57 16 11 C -0.12 -0.25 7.18 31.59 0.23 -0.03 16 12 C 0.11 0.70 7.78 86.70 0.67 1.37 16 13 C 0.13 3.36 4.57 45.45 0.21 3.57 16 14 C 0.00 -0.11 7.23 83.58 0.60 0.50 16 15 N -0.47 -15.54 5.82 -932.56 -5.43 -20.96 16 16 C 0.03 0.87 5.30 85.56 0.45 1.32 16 17 C 0.44 21.38 7.85 87.66 0.69 22.07 16 18 O -0.62 -35.86 16.01 -3.08 -0.05 -35.91 16 19 N -0.57 -29.64 5.29 -306.98 -1.62 -31.26 16 20 C -0.33 -19.18 9.68 84.04 0.81 -18.37 16 21 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 22 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 23 N -0.92 -49.48 13.05 21.66 0.28 -49.20 16 24 Si 0.99 43.37 29.55 68.60 2.03 45.40 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 28 C 0.00 -0.10 7.11 83.58 0.59 0.50 16 29 H 0.08 0.84 7.28 -2.39 -0.02 0.83 16 30 H 0.09 1.07 5.82 -2.39 -0.01 1.05 16 31 H 0.08 1.03 5.98 -2.38 -0.01 1.02 16 32 H 0.22 2.61 6.12 -2.91 -0.02 2.59 16 33 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.10 0.08 8.14 -2.38 -0.02 0.06 16 36 H 0.14 -0.49 8.14 -2.39 -0.02 -0.51 16 37 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.11 3.38 7.26 -2.39 -0.02 3.36 16 40 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.10 1.81 6.81 -2.38 -0.02 1.80 16 42 H 0.11 3.26 8.08 -2.39 -0.02 3.24 16 43 H 0.09 2.47 7.30 -2.39 -0.02 2.46 16 44 H 0.40 19.15 7.90 -92.70 -0.73 18.42 16 45 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 46 H 0.10 2.24 5.72 -2.38 -0.01 2.23 16 47 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -84.47 384.02 -1.79 -86.26 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: 0.29 Total: 29.00 kcal Atomic # 6 Polarization: 18.77 SS G_CDS: 7.63 Total: 26.40 kcal Atomic # 7 Polarization: -120.03 SS G_CDS: -11.63 Total: -131.65 kcal Atomic # 8 Polarization: -55.30 SS G_CDS: -0.12 Total: -55.41 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -84.47 -1.79 -86.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499685854.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.693 kcal (2) G-P(sol) polarization free energy of solvation -84.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds