Wall clock time and date at job start Wed Apr 1 2020 05:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34776 * 120.00048 * 2 1 4 4 O 1.21281 * 120.00060 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00053 * 359.97438 * 3 2 1 6 6 C 1.52995 * 109.47385 * 180.02562 * 5 3 2 7 7 C 1.50700 * 109.47113 * 180.02562 * 6 5 3 8 8 N 1.31793 * 119.12003 * 269.72451 * 7 6 5 9 9 C 1.32339 * 120.81917 * 179.75893 * 8 7 6 10 10 C 1.38605 * 119.09993 * 0.51156 * 9 8 7 11 11 C 1.38593 * 118.40040 * 359.74553 * 10 9 8 12 12 N 1.31794 * 119.12337 * 89.99957 * 7 6 5 13 13 C 1.46499 * 119.99966 * 179.97438 * 2 1 3 14 14 C 1.53932 * 113.73412 * 323.27001 * 13 2 1 15 15 N 1.47959 * 86.18045 * 90.64001 * 14 13 2 16 16 C 1.46902 * 110.99905 * 137.58303 * 15 14 13 17 17 C 1.50699 * 109.47319 * 70.64321 * 16 15 14 18 18 O 1.21291 * 119.99712 * 359.97438 * 17 16 15 19 19 N 1.34772 * 120.00368 * 179.97438 * 17 16 15 20 20 C 1.37087 * 120.00565 * 179.97438 * 19 17 16 21 21 H 1.08006 * 119.99891 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00760 * 179.97438 * 20 19 17 23 23 N 1.31405 * 120.00603 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99597 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47398 * 89.99619 * 24 22 20 26 26 H 1.48496 * 109.47234 * 210.00303 * 24 22 20 27 27 H 1.48504 * 109.47141 * 329.99883 * 24 22 20 28 28 C 1.47957 * 90.76368 * 24.69138 * 15 14 13 29 29 H 1.09005 * 109.47173 * 270.00035 * 1 2 3 30 30 H 1.09001 * 109.47588 * 30.00029 * 1 2 3 31 31 H 1.09005 * 109.47125 * 150.00533 * 1 2 3 32 32 H 1.09000 * 109.46884 * 300.00687 * 5 3 2 33 33 H 1.09003 * 109.47210 * 60.00112 * 5 3 2 34 34 H 1.09003 * 109.46891 * 299.99923 * 6 5 3 35 35 H 1.08998 * 109.47097 * 60.00220 * 6 5 3 36 36 H 1.07989 * 120.45033 * 180.23495 * 9 8 7 37 37 H 1.07993 * 120.79769 * 179.77153 * 10 9 8 38 38 H 1.08002 * 120.45128 * 180.02562 * 11 10 9 39 39 H 1.09000 * 113.00735 * 191.63827 * 13 2 1 40 40 H 1.09004 * 113.75969 * 204.95796 * 14 13 2 41 41 H 1.08999 * 113.76302 * 336.32252 * 14 13 2 42 42 H 1.09007 * 109.46697 * 190.64055 * 16 15 14 43 43 H 1.09001 * 109.46915 * 310.63777 * 16 15 14 44 44 H 0.97011 * 119.99660 * 359.97438 * 19 17 16 45 45 H 0.97001 * 120.00504 * 179.97438 * 23 22 20 46 46 H 1.09000 * 113.75975 * 220.99328 * 28 15 14 47 47 H 1.08998 * 113.76273 * 89.62912 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3795 3.6352 -0.0011 7 6 1.6260 4.9403 -0.0011 8 7 1.3097 5.4983 -1.1524 9 6 0.6443 6.6416 -1.1916 10 6 0.2898 7.2564 -0.0010 11 6 0.6446 6.6418 1.1894 12 7 1.3057 5.4960 1.1503 13 6 2.1975 -1.2687 0.0006 14 6 1.5292 -2.3696 0.8438 15 7 0.8196 -2.7514 -0.3971 16 6 0.7813 -4.2116 -0.5536 17 6 -0.1521 -4.8024 0.4716 18 8 -0.7283 -4.0783 1.2557 19 7 -0.3465 -6.1352 0.5171 20 6 -1.1951 -6.6728 1.4499 21 1 -1.7083 -6.0281 2.1482 22 6 -1.3961 -8.0469 1.4966 23 7 -2.2099 -8.5620 2.3904 24 14 -0.5091 -9.1619 0.2885 25 1 0.7922 -9.5828 0.8668 26 1 -1.3420 -10.3614 0.0186 27 1 -0.2725 -8.4280 -0.9807 28 6 1.8971 -2.1582 -1.2194 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8901 -0.5138 32 1 0.7590 2.5298 -0.8908 33 1 0.7584 2.5303 0.8892 34 1 3.0062 3.5779 0.8889 35 1 3.0062 3.5771 -0.8911 36 1 0.3849 7.0916 -2.1383 37 1 -0.2501 8.1917 -0.0010 38 1 0.3849 7.0916 2.1363 39 1 3.2615 -1.1463 0.2029 40 1 2.2232 -3.1289 1.2042 41 1 0.8726 -1.9867 1.6251 42 1 0.4269 -4.4606 -1.5539 43 1 1.7823 -4.6186 -0.4109 44 1 0.1141 -6.7143 -0.1103 45 1 -2.3505 -9.5213 2.4228 46 1 1.5344 -1.6063 -2.0866 47 1 2.6987 -2.8556 -1.4624 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499759118.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:28 Heat of formation + Delta-G solvation = 33.995449 kcal Electronic energy + Delta-G solvation = -29289.743548 eV Core-core repulsion = 25088.830578 eV Total energy + Delta-G solvation = -4200.912970 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.96 seconds Orbital eigenvalues (eV) -41.46249 -40.78321 -39.19992 -37.86421 -34.87158 -34.60081 -34.12185 -33.93964 -31.72601 -31.36798 -30.00474 -27.04855 -26.47571 -26.03263 -25.17800 -24.97292 -23.37646 -22.51812 -20.39143 -19.41621 -18.63413 -18.40416 -17.97300 -17.73652 -16.93824 -16.41238 -16.14092 -15.90886 -15.64789 -15.34839 -15.27734 -14.93590 -14.78687 -14.21243 -14.02712 -13.82074 -13.56438 -13.39379 -13.15286 -12.85532 -12.80894 -12.51786 -12.43443 -12.33804 -12.01288 -11.92995 -11.64903 -11.42702 -11.28149 -11.23973 -11.20935 -10.98331 -10.83552 -10.61550 -10.07378 -9.99594 -9.81683 -9.65296 -9.58757 -8.80076 -8.65540 -8.37757 -8.19812 -6.33126 -3.84609 0.43126 0.65380 2.49269 2.79395 3.00875 3.04930 3.13547 3.33215 3.51089 3.70684 3.73982 3.90899 4.08292 4.15143 4.37978 4.45912 4.57689 4.63981 4.66171 4.74886 4.80618 4.89384 4.98345 5.16027 5.17454 5.26802 5.30548 5.37029 5.41155 5.54434 5.57722 5.63905 5.67747 5.69123 5.72344 5.78255 5.90269 5.99039 6.08445 6.10283 6.44504 6.54904 6.56768 7.01448 7.33922 7.55536 7.68183 8.05265 8.11752 8.57453 8.92865 9.40202 9.80413 10.79936 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026803 B = 0.001679 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.421057 B =16675.468564 C =17191.663571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.588 5.588 3 C 0.519 3.481 4 O -0.545 6.545 5 C -0.128 4.128 6 C -0.037 4.037 7 C 0.323 3.677 8 N -0.516 5.516 9 C 0.149 3.851 10 C -0.236 4.236 11 C 0.150 3.850 12 N -0.515 5.515 13 C 0.111 3.889 14 C 0.013 3.987 15 N -0.452 5.452 16 C 0.006 3.994 17 C 0.452 3.548 18 O -0.561 6.561 19 N -0.591 5.591 20 C -0.305 4.305 21 H 0.119 0.881 22 C 0.042 3.958 23 N -0.881 5.881 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.270 1.270 28 C -0.012 4.012 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.169 0.831 37 H 0.148 0.852 38 H 0.169 0.831 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.057 0.943 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.091 0.909 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.814 27.342 -8.956 29.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.319 5.319 3 C 0.308 3.692 4 O -0.423 6.423 5 C -0.169 4.169 6 C -0.077 4.077 7 C 0.056 3.944 8 N -0.230 5.230 9 C -0.017 4.017 10 C -0.258 4.258 11 C -0.016 4.016 12 N -0.229 5.229 13 C 0.006 3.994 14 C -0.117 4.117 15 N -0.175 5.175 16 C -0.126 4.126 17 C 0.238 3.762 18 O -0.443 6.443 19 N -0.230 5.230 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.142 4.142 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.186 0.814 37 H 0.166 0.834 38 H 0.186 0.814 39 H 0.127 0.873 40 H 0.096 0.904 41 H 0.118 0.882 42 H 0.110 0.890 43 H 0.075 0.925 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.109 0.891 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.747 26.962 -8.418 29.289 hybrid contribution 0.588 -0.664 -0.834 1.217 sum 8.334 26.298 -9.252 29.097 Atomic orbital electron populations 1.22034 0.78147 1.04346 1.02745 1.47454 1.07583 1.04559 1.72341 1.20487 0.87861 0.85164 0.75722 1.90689 1.13903 1.87456 1.50238 1.21557 0.99042 0.91335 1.04980 1.20149 0.96071 0.85514 1.05922 1.23250 0.91833 0.95907 0.83422 1.68314 1.12976 1.11127 1.30566 1.23293 0.89672 0.89791 0.98909 1.22940 1.04291 1.03530 0.95032 1.23305 0.89623 0.89732 0.98937 1.68323 1.12902 1.11099 1.30554 1.22462 0.97265 0.83301 0.96345 1.24200 0.96574 0.95696 0.95223 1.68411 1.35977 1.09172 1.03944 1.22512 0.99080 0.90438 1.00587 1.19580 0.86534 0.82607 0.87479 1.90556 1.51384 1.59323 1.43033 1.42219 1.42424 1.05966 1.32430 1.19416 1.20748 0.92077 1.11112 0.86302 1.25036 0.97118 0.96683 0.97297 1.69616 1.35486 1.12898 1.34093 0.86676 0.80306 0.81346 0.81078 1.19662 1.20158 1.19510 1.24486 0.94418 0.97359 0.97986 0.92352 0.91898 0.87667 0.88445 0.88373 0.88234 0.88270 0.81412 0.83435 0.81376 0.87334 0.90391 0.88198 0.89030 0.92540 0.79738 0.91603 0.89105 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.76 9.19 59.85 0.55 1.31 16 2 N -0.59 -7.02 3.09 -175.28 -0.54 -7.56 16 3 C 0.52 6.29 7.67 -10.98 -0.08 6.21 16 4 O -0.55 -8.18 15.47 5.56 0.09 -8.09 16 5 C -0.13 -1.20 4.23 -27.88 -0.12 -1.32 16 6 C -0.04 -0.36 4.94 -27.89 -0.14 -0.50 16 7 C 0.32 3.19 6.90 -157.20 -1.08 2.11 16 8 N -0.52 -4.85 10.33 -10.73 -0.11 -4.96 16 9 C 0.15 0.95 11.31 -17.20 -0.19 0.75 16 10 C -0.24 -1.18 10.17 -39.32 -0.40 -1.58 16 11 C 0.15 0.98 11.30 -17.20 -0.19 0.78 16 12 N -0.51 -4.95 10.33 -10.72 -0.11 -5.06 16 13 C 0.11 1.39 4.51 -69.63 -0.31 1.08 16 14 C 0.01 0.18 5.99 -2.77 -0.02 0.17 16 15 N -0.45 -6.69 4.08 -239.91 -0.98 -7.67 16 16 C 0.01 0.09 5.31 -4.98 -0.03 0.07 16 17 C 0.45 9.98 7.59 -10.99 -0.08 9.89 16 18 O -0.56 -14.50 15.12 5.55 0.08 -14.42 16 19 N -0.59 -13.84 5.09 -10.97 -0.06 -13.90 16 20 C -0.30 -8.53 10.16 -14.94 -0.15 -8.68 16 21 H 0.12 3.81 7.39 -52.48 -0.39 3.42 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -25.58 13.96 55.50 0.77 -24.81 16 24 Si 0.88 19.22 27.74 -169.99 -4.71 14.50 16 25 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 26 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 28 C -0.01 -0.14 7.45 -2.77 -0.02 -0.16 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.54 6.44 -51.93 -0.33 0.20 16 31 H 0.10 1.35 6.07 -51.93 -0.32 1.04 16 32 H 0.10 0.81 7.40 -51.93 -0.38 0.43 16 33 H 0.10 0.86 8.11 -51.93 -0.42 0.44 16 34 H 0.10 1.03 8.10 -51.93 -0.42 0.61 16 35 H 0.10 1.00 8.10 -51.93 -0.42 0.58 16 36 H 0.17 0.53 8.06 -52.49 -0.42 0.11 16 37 H 0.15 0.26 8.06 -52.49 -0.42 -0.16 16 38 H 0.17 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.11 1.38 7.25 -51.93 -0.38 1.00 16 40 H 0.08 1.11 7.78 -51.93 -0.40 0.70 16 41 H 0.10 1.65 7.77 -51.93 -0.40 1.24 16 42 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.06 0.78 7.69 -51.93 -0.40 0.38 16 44 H 0.37 7.63 5.76 -40.82 -0.24 7.39 16 45 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.08 0.79 7.79 -51.93 -0.40 0.39 16 LS Contribution 390.73 15.07 5.89 5.89 Total: -1.00 -35.69 390.73 -8.66 -44.36 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -6.61 Total: 10.55 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: -2.37 Total: 11.17 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: -1.02 Total: -63.96 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: 0.17 Total: -22.51 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.71 Total: 14.50 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.69 -8.66 -44.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499759118.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.352 kcal (2) G-P(sol) polarization free energy of solvation -35.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.96 seconds