Wall clock time and date at job start Wed Apr 1 2020 05:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34776 * 120.00048 * 2 1 4 4 O 1.21281 * 120.00060 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00053 * 359.97438 * 3 2 1 6 6 C 1.52995 * 109.47385 * 180.02562 * 5 3 2 7 7 C 1.50700 * 109.47113 * 180.02562 * 6 5 3 8 8 N 1.31793 * 119.12003 * 269.72451 * 7 6 5 9 9 C 1.32339 * 120.81917 * 179.75893 * 8 7 6 10 10 C 1.38605 * 119.09993 * 0.51156 * 9 8 7 11 11 C 1.38593 * 118.40040 * 359.74553 * 10 9 8 12 12 N 1.31794 * 119.12337 * 89.99957 * 7 6 5 13 13 C 1.46499 * 119.99966 * 179.97438 * 2 1 3 14 14 C 1.53932 * 113.73412 * 323.27001 * 13 2 1 15 15 N 1.47959 * 86.18045 * 90.64001 * 14 13 2 16 16 C 1.46902 * 110.99905 * 137.58303 * 15 14 13 17 17 C 1.50699 * 109.47319 * 70.64321 * 16 15 14 18 18 O 1.21291 * 119.99712 * 359.97438 * 17 16 15 19 19 N 1.34772 * 120.00368 * 179.97438 * 17 16 15 20 20 C 1.37087 * 120.00565 * 179.97438 * 19 17 16 21 21 H 1.08006 * 119.99891 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00760 * 179.97438 * 20 19 17 23 23 N 1.31405 * 120.00603 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99597 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47398 * 89.99619 * 24 22 20 26 26 H 1.48496 * 109.47234 * 210.00303 * 24 22 20 27 27 H 1.48504 * 109.47141 * 329.99883 * 24 22 20 28 28 C 1.47957 * 90.76368 * 24.69138 * 15 14 13 29 29 H 1.09005 * 109.47173 * 270.00035 * 1 2 3 30 30 H 1.09001 * 109.47588 * 30.00029 * 1 2 3 31 31 H 1.09005 * 109.47125 * 150.00533 * 1 2 3 32 32 H 1.09000 * 109.46884 * 300.00687 * 5 3 2 33 33 H 1.09003 * 109.47210 * 60.00112 * 5 3 2 34 34 H 1.09003 * 109.46891 * 299.99923 * 6 5 3 35 35 H 1.08998 * 109.47097 * 60.00220 * 6 5 3 36 36 H 1.07989 * 120.45033 * 180.23495 * 9 8 7 37 37 H 1.07993 * 120.79769 * 179.77153 * 10 9 8 38 38 H 1.08002 * 120.45128 * 180.02562 * 11 10 9 39 39 H 1.09000 * 113.00735 * 191.63827 * 13 2 1 40 40 H 1.09004 * 113.75969 * 204.95796 * 14 13 2 41 41 H 1.08999 * 113.76302 * 336.32252 * 14 13 2 42 42 H 1.09007 * 109.46697 * 190.64055 * 16 15 14 43 43 H 1.09001 * 109.46915 * 310.63777 * 16 15 14 44 44 H 0.97011 * 119.99660 * 359.97438 * 19 17 16 45 45 H 0.97001 * 120.00504 * 179.97438 * 23 22 20 46 46 H 1.09000 * 113.75975 * 220.99328 * 28 15 14 47 47 H 1.08998 * 113.76273 * 89.62912 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3795 3.6352 -0.0011 7 6 1.6260 4.9403 -0.0011 8 7 1.3097 5.4983 -1.1524 9 6 0.6443 6.6416 -1.1916 10 6 0.2898 7.2564 -0.0010 11 6 0.6446 6.6418 1.1894 12 7 1.3057 5.4960 1.1503 13 6 2.1975 -1.2687 0.0006 14 6 1.5292 -2.3696 0.8438 15 7 0.8196 -2.7514 -0.3971 16 6 0.7813 -4.2116 -0.5536 17 6 -0.1521 -4.8024 0.4716 18 8 -0.7283 -4.0783 1.2557 19 7 -0.3465 -6.1352 0.5171 20 6 -1.1951 -6.6728 1.4499 21 1 -1.7083 -6.0281 2.1482 22 6 -1.3961 -8.0469 1.4966 23 7 -2.2099 -8.5620 2.3904 24 14 -0.5091 -9.1619 0.2885 25 1 0.7922 -9.5828 0.8668 26 1 -1.3420 -10.3614 0.0186 27 1 -0.2725 -8.4280 -0.9807 28 6 1.8971 -2.1582 -1.2194 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8901 -0.5138 32 1 0.7590 2.5298 -0.8908 33 1 0.7584 2.5303 0.8892 34 1 3.0062 3.5779 0.8889 35 1 3.0062 3.5771 -0.8911 36 1 0.3849 7.0916 -2.1383 37 1 -0.2501 8.1917 -0.0010 38 1 0.3849 7.0916 2.1363 39 1 3.2615 -1.1463 0.2029 40 1 2.2232 -3.1289 1.2042 41 1 0.8726 -1.9867 1.6251 42 1 0.4269 -4.4606 -1.5539 43 1 1.7823 -4.6186 -0.4109 44 1 0.1141 -6.7143 -0.1103 45 1 -2.3505 -9.5213 2.4228 46 1 1.5344 -1.6063 -2.0866 47 1 2.6987 -2.8556 -1.4624 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499759118.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:27 Heat of formation + Delta-G solvation = 6.356941 kcal Electronic energy + Delta-G solvation = -29290.942044 eV Core-core repulsion = 25088.830578 eV Total energy + Delta-G solvation = -4202.111466 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.05838 -41.80868 -40.44678 -39.44779 -36.09579 -35.76198 -35.27331 -34.67332 -33.75230 -32.12778 -31.15201 -28.14806 -27.52563 -27.03924 -26.59301 -25.46428 -24.69951 -23.26105 -21.36259 -21.24842 -20.28005 -19.60729 -18.57096 -18.54060 -17.83776 -17.60816 -17.27044 -17.00210 -16.77105 -16.39937 -16.37233 -15.99370 -15.86804 -15.31451 -15.04717 -14.99954 -14.72981 -14.38187 -14.35310 -14.30767 -13.88492 -13.82165 -13.57003 -13.35676 -13.22788 -13.05295 -12.84732 -12.70428 -12.41462 -12.21690 -12.11133 -11.98799 -11.94018 -11.84007 -11.79114 -11.49651 -10.95588 -10.43978 -10.38893 -10.23920 -10.21022 -9.73795 -9.62995 -8.40952 -6.01522 -0.08366 0.16863 1.30162 1.35329 1.44259 1.52930 1.88317 1.97147 2.22953 2.66236 2.77941 2.89879 3.11427 3.15883 3.25641 3.47784 3.61588 3.78547 3.78721 3.98728 4.06446 4.12889 4.17076 4.23273 4.24039 4.32684 4.41740 4.45122 4.52040 4.53047 4.60519 4.63164 4.69392 4.75961 4.83614 4.91817 5.01060 5.01407 5.15130 5.31687 5.47659 5.53295 5.55550 5.87920 5.98918 6.07735 6.38284 6.59842 6.89085 7.08722 7.12825 7.40632 7.97701 8.76660 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026803 B = 0.001679 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.421057 B =16675.468564 C =17191.663571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.589 5.589 3 C 0.519 3.481 4 O -0.576 6.576 5 C -0.116 4.116 6 C -0.031 4.031 7 C 0.305 3.695 8 N -0.540 5.540 9 C 0.137 3.863 10 C -0.219 4.219 11 C 0.135 3.865 12 N -0.544 5.544 13 C 0.115 3.885 14 C 0.009 3.991 15 N -0.471 5.471 16 C 0.017 3.983 17 C 0.452 3.548 18 O -0.607 6.607 19 N -0.593 5.593 20 C -0.326 4.326 21 H 0.055 0.945 22 C -0.016 4.016 23 N -0.935 5.935 24 Si 0.964 3.036 25 H -0.258 1.258 26 H -0.276 1.276 27 H -0.231 1.231 28 C 0.004 3.996 29 H 0.047 0.953 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.199 0.801 37 H 0.186 0.814 38 H 0.196 0.804 39 H 0.108 0.892 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.120 0.880 43 H 0.090 0.910 44 H 0.389 0.611 45 H 0.278 0.722 46 H 0.102 0.898 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.037 28.339 -12.171 32.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.320 5.320 3 C 0.309 3.691 4 O -0.456 6.456 5 C -0.157 4.157 6 C -0.070 4.070 7 C 0.037 3.963 8 N -0.254 5.254 9 C -0.028 4.028 10 C -0.240 4.240 11 C -0.030 4.030 12 N -0.258 5.258 13 C 0.010 3.990 14 C -0.121 4.121 15 N -0.194 5.194 16 C -0.114 4.114 17 C 0.240 3.760 18 O -0.491 6.491 19 N -0.235 5.235 20 C -0.456 4.456 21 H 0.073 0.927 22 C -0.214 4.214 23 N -0.576 5.576 24 Si 0.784 3.216 25 H -0.183 1.183 26 H -0.201 1.201 27 H -0.154 1.154 28 C -0.125 4.125 29 H 0.066 0.934 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.130 0.870 33 H 0.122 0.878 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.216 0.784 37 H 0.203 0.797 38 H 0.213 0.787 39 H 0.126 0.874 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.138 0.862 43 H 0.108 0.892 44 H 0.224 0.776 45 H 0.088 0.912 46 H 0.120 0.880 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 8.967 27.992 -11.654 31.619 hybrid contribution 0.113 -0.764 0.279 0.821 sum 9.081 27.228 -11.375 30.874 Atomic orbital electron populations 1.22000 0.77551 1.04889 1.02279 1.47544 1.07934 1.04526 1.71980 1.20910 0.87573 0.85849 0.74795 1.90671 1.15315 1.87895 1.51741 1.21487 0.98740 0.89627 1.05824 1.19993 0.95974 0.86270 1.04784 1.23070 0.93027 0.96188 0.83982 1.68285 1.14071 1.12662 1.30416 1.23918 0.88958 0.89042 1.00886 1.23334 1.02723 1.04161 0.93783 1.23890 0.89093 0.89049 1.00938 1.68285 1.14134 1.12728 1.30688 1.22402 0.96963 0.83197 0.96453 1.24134 0.96242 0.96820 0.94873 1.68428 1.37841 1.08530 1.04591 1.22485 0.98788 0.90903 0.99233 1.20844 0.85885 0.81859 0.87454 1.90544 1.53068 1.60389 1.45061 1.42050 1.42338 1.06868 1.32235 1.18984 1.22351 0.92182 1.12044 0.92699 1.26102 0.97685 0.98080 0.99541 1.69801 1.37518 1.13700 1.36578 0.85371 0.78732 0.78256 0.79199 1.18260 1.20148 1.15405 1.24515 0.93831 0.96884 0.97286 0.93380 0.89160 0.89198 0.86984 0.87814 0.89625 0.89108 0.78438 0.79688 0.78731 0.87415 0.90107 0.91257 0.86192 0.89250 0.77565 0.91211 0.88021 0.87766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.62 9.19 127.77 1.17 2.79 16 2 N -0.59 -13.77 3.09 -826.85 -2.56 -16.33 16 3 C 0.52 12.46 7.67 87.66 0.67 13.14 16 4 O -0.58 -17.39 15.47 -3.03 -0.05 -17.44 16 5 C -0.12 -2.14 4.23 29.85 0.13 -2.01 16 6 C -0.03 -0.62 4.94 29.85 0.15 -0.47 16 7 C 0.30 6.00 6.90 138.75 0.96 6.95 16 8 N -0.54 -9.69 10.33 -187.85 -1.94 -11.63 16 9 C 0.14 1.45 11.31 84.70 0.96 2.41 16 10 C -0.22 -1.58 10.17 22.44 0.23 -1.35 16 11 C 0.14 1.54 11.30 84.70 0.96 2.49 16 12 N -0.54 -10.27 10.33 -187.84 -1.94 -12.21 16 13 C 0.12 2.76 4.51 46.56 0.21 2.97 16 14 C 0.01 0.26 5.99 86.40 0.52 0.78 16 15 N -0.47 -13.14 4.08 -912.93 -3.72 -16.86 16 16 C 0.02 0.50 5.31 85.56 0.45 0.96 16 17 C 0.45 19.83 7.59 87.66 0.67 20.50 16 18 O -0.61 -32.65 15.12 -3.06 -0.05 -32.69 16 19 N -0.59 -27.49 5.09 -307.00 -1.56 -29.05 16 20 C -0.33 -18.98 10.16 84.04 0.85 -18.12 16 21 H 0.05 3.81 7.39 -2.91 -0.02 3.79 16 22 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 23 N -0.94 -56.33 13.96 21.66 0.30 -56.03 16 24 Si 0.96 38.54 27.74 68.60 1.90 40.45 16 25 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 26 H -0.28 -11.02 7.11 99.48 0.71 -10.32 16 27 H -0.23 -7.72 6.52 99.48 0.65 -7.07 16 28 C 0.00 0.08 7.45 86.41 0.64 0.73 16 29 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.09 1.42 6.44 -2.39 -0.02 1.40 16 31 H 0.09 2.27 6.07 -2.38 -0.01 2.26 16 32 H 0.11 1.74 7.40 -2.39 -0.02 1.72 16 33 H 0.10 1.81 8.11 -2.39 -0.02 1.79 16 34 H 0.09 1.90 8.10 -2.39 -0.02 1.88 16 35 H 0.09 1.91 8.10 -2.39 -0.02 1.90 16 36 H 0.20 0.67 8.06 -2.92 -0.02 0.64 16 37 H 0.19 -0.14 8.06 -2.91 -0.02 -0.16 16 38 H 0.20 0.91 8.06 -2.91 -0.02 0.88 16 39 H 0.11 2.64 7.25 -2.39 -0.02 2.62 16 40 H 0.08 2.25 7.78 -2.38 -0.02 2.23 16 41 H 0.07 2.41 7.77 -2.39 -0.02 2.40 16 42 H 0.12 2.89 8.14 -2.38 -0.02 2.87 16 43 H 0.09 2.07 7.69 -2.39 -0.02 2.05 16 44 H 0.39 14.89 5.76 -92.70 -0.53 14.36 16 45 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 46 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.10 1.63 7.79 -2.39 -0.02 1.61 16 Total: -1.00 -84.97 390.73 -0.17 -85.14 By element: Atomic # 1 Polarization: 34.90 SS G_CDS: 0.41 Total: 35.32 kcal Atomic # 6 Polarization: 22.32 SS G_CDS: 9.03 Total: 31.35 kcal Atomic # 7 Polarization: -130.69 SS G_CDS: -11.42 Total: -142.11 kcal Atomic # 8 Polarization: -50.04 SS G_CDS: -0.09 Total: -50.14 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 1.90 Total: 40.45 kcal Total: -84.97 -0.17 -85.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499759118.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.494 kcal (2) G-P(sol) polarization free energy of solvation -84.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds