Wall clock time and date at job start Wed Apr 1 2020 05:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28448 * 125.18802 * 2 1 4 4 C 1.30862 * 110.92693 * 179.97438 * 3 2 1 5 5 C 1.39680 * 107.86315 * 359.97438 * 4 3 2 6 6 C 1.36601 * 125.19184 * 179.97438 * 2 1 3 7 7 C 1.47154 * 126.88353 * 0.02562 * 6 2 1 8 8 O 1.21630 * 119.99939 * 348.67271 * 7 6 2 9 9 N 1.34782 * 120.00272 * 168.67895 * 7 6 2 10 10 C 1.48318 * 128.19699 * 359.24350 * 9 7 6 11 11 C 1.54004 * 104.57234 * 221.86500 * 10 9 7 12 12 H 1.08999 * 112.88897 * 97.91125 * 11 10 9 13 13 C 1.55904 * 108.94601 * 224.42624 * 11 10 9 14 14 N 1.48728 * 104.36763 * 136.69795 * 13 11 10 15 15 C 1.46894 * 111.00486 * 198.76273 * 14 13 11 16 16 C 1.50707 * 109.46663 * 284.52612 * 15 14 13 17 17 O 1.21292 * 120.00207 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99840 * 180.02562 * 16 15 14 19 19 C 1.37099 * 120.00111 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99982 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00075 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00105 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00181 * 359.97438 * 21 19 18 24 24 H 1.48493 * 109.47149 * 90.00402 * 23 21 19 25 25 H 1.48498 * 109.47297 * 210.00743 * 23 21 19 26 26 H 1.48505 * 109.46978 * 330.00558 * 23 21 19 27 27 C 1.48734 * 103.49421 * 317.89958 * 14 13 11 28 28 C 1.54402 * 104.35112 * 41.79530 * 27 14 13 29 29 H 1.09005 * 112.56791 * 98.12819 * 28 27 14 30 30 C 1.48313 * 128.20713 * 179.56522 * 9 7 6 31 31 H 1.09004 * 109.47216 * 274.43598 * 1 2 3 32 32 H 1.08998 * 109.47237 * 34.44016 * 1 2 3 33 33 H 1.09000 * 109.47350 * 154.43633 * 1 2 3 34 34 H 1.07996 * 126.07056 * 180.26419 * 4 3 2 35 35 H 1.07993 * 127.32345 * 180.02562 * 5 4 3 36 36 H 1.08996 * 110.45959 * 340.62625 * 10 9 7 37 37 H 1.09004 * 110.45576 * 103.18712 * 10 9 7 38 38 H 1.09002 * 110.71111 * 17.84830 * 13 11 10 39 39 H 1.09002 * 110.29876 * 255.34525 * 13 11 10 40 40 H 1.09000 * 109.47538 * 44.52106 * 15 14 13 41 41 H 1.08994 * 109.47785 * 164.52714 * 15 14 13 42 42 H 0.97005 * 120.00186 * 0.02562 * 18 16 15 43 43 H 0.96997 * 120.00153 * 179.97438 * 22 21 19 44 44 H 1.09007 * 110.45508 * 283.08023 * 27 14 13 45 45 H 1.08998 * 110.56573 * 160.57043 * 27 14 13 46 46 H 1.09001 * 110.45351 * 256.81824 * 30 9 7 47 47 H 1.09004 * 110.45556 * 19.24654 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2051 1.0498 0.0000 4 6 3.4734 0.7274 0.0005 5 6 3.5612 -0.6666 0.0015 6 6 2.2522 -1.1163 0.0005 7 6 1.7993 -2.5165 0.0006 8 8 0.6294 -2.7772 0.2071 9 7 2.6809 -3.5100 -0.2280 10 6 4.1324 -3.4007 -0.5129 11 6 4.3857 -4.4266 -1.6332 12 1 4.4026 -3.9754 -2.6253 13 6 5.6823 -5.2268 -1.3032 14 7 5.3348 -6.6384 -1.6170 15 6 6.2635 -7.5678 -0.9601 16 6 7.5789 -7.5672 -1.6957 17 8 7.7278 -6.8623 -2.6714 18 7 8.5894 -8.3507 -1.2699 19 6 9.7862 -8.3498 -1.9387 20 1 9.9191 -7.7215 -2.8070 21 6 10.8279 -9.1581 -1.5000 22 7 11.9752 -9.1568 -2.1408 23 14 10.5979 -10.2454 0.0014 24 1 10.0783 -11.5705 -0.4220 25 1 11.9020 -10.4218 0.6893 26 1 9.6304 -9.6081 0.9305 27 6 3.9586 -6.7863 -1.0726 28 6 3.2472 -5.4746 -1.4691 29 1 2.6417 -5.5826 -2.3691 30 6 2.4283 -4.9711 -0.2607 31 1 -0.3634 0.0795 1.0246 32 1 -0.3633 0.8475 -0.5812 33 1 -0.3634 -0.9270 -0.4434 34 1 4.3047 1.4168 0.0047 35 1 4.4594 -1.2662 0.0026 36 1 4.3788 -2.3957 -0.8555 37 1 4.7147 -3.6557 0.3726 38 1 5.9413 -5.1235 -0.2494 39 1 6.5059 -4.8883 -1.9319 40 1 6.4238 -7.2532 0.0711 41 1 5.8412 -8.5725 -0.9719 42 1 8.4700 -8.9154 -0.4902 43 1 12.7024 -9.7207 -1.8344 44 1 3.9873 -6.8914 0.0120 45 1 3.4582 -7.6428 -1.5244 46 1 2.7794 -5.4390 0.6590 47 1 1.3668 -5.1709 -0.4076 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501209259.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:32 Heat of formation + Delta-G solvation = 58.523558 kcal Electronic energy + Delta-G solvation = -30254.056866 eV Core-core repulsion = 26054.207514 eV Total energy + Delta-G solvation = -4199.849352 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -42.89252 -40.71153 -39.05721 -38.12303 -35.98716 -33.97223 -33.68614 -32.31583 -31.68911 -31.16383 -30.44578 -27.80055 -27.35115 -26.14748 -25.27444 -23.87828 -22.44129 -21.93250 -21.39789 -19.92043 -19.81005 -19.29946 -18.25404 -17.65377 -17.06514 -16.66016 -16.23687 -15.93370 -15.78397 -15.51590 -15.16937 -14.87127 -14.74867 -14.43061 -14.15711 -13.94084 -13.51226 -13.37151 -13.18077 -13.00138 -12.93886 -12.75538 -12.48198 -12.34923 -12.25207 -11.96962 -11.62169 -11.46355 -11.32722 -11.17007 -11.01222 -10.84107 -10.75112 -10.61269 -10.39752 -9.99211 -9.62238 -9.57258 -9.38420 -9.16327 -8.69486 -8.20998 -8.16355 -6.32336 -3.83785 0.88433 1.90669 2.26165 2.63983 2.79508 3.00154 3.05123 3.13538 3.71529 3.81334 3.89594 4.08547 4.15318 4.18327 4.37576 4.55092 4.70048 4.73355 4.78883 4.83338 4.87972 4.95501 4.99135 5.09438 5.14047 5.18611 5.19127 5.28535 5.36839 5.42816 5.44008 5.47028 5.56112 5.64548 5.65210 5.75576 5.87644 5.95213 6.06145 6.10992 6.21724 6.32830 6.88554 7.00086 7.03620 7.56796 7.57097 7.72951 8.12991 8.58916 8.94179 9.41183 9.82252 10.80796 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021708 B = 0.002035 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.551316 B =13756.174744 C =14418.295590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.259 5.259 3 N -0.278 5.278 4 C -0.001 4.001 5 C -0.198 4.198 6 C -0.035 4.035 7 C 0.613 3.387 8 O -0.545 6.545 9 N -0.607 5.607 10 C 0.083 3.917 11 C -0.100 4.100 12 H 0.102 0.898 13 C 0.041 3.959 14 N -0.479 5.479 15 C 0.030 3.970 16 C 0.454 3.546 17 O -0.558 6.558 18 N -0.593 5.593 19 C -0.304 4.304 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.882 5.882 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.034 3.966 28 C -0.101 4.101 29 H 0.099 0.901 30 C 0.112 3.888 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.189 0.811 35 H 0.174 0.826 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.045 0.955 39 H 0.100 0.900 40 H 0.052 0.948 41 H 0.091 0.909 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.047 0.953 45 H 0.085 0.915 46 H 0.078 0.922 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.309 13.183 8.148 26.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.046 5.046 3 N -0.111 5.111 4 C -0.177 4.177 5 C -0.227 4.227 6 C -0.163 4.163 7 C 0.402 3.598 8 O -0.423 6.423 9 N -0.340 5.340 10 C -0.039 4.039 11 C -0.120 4.120 12 H 0.121 0.879 13 C -0.087 4.087 14 N -0.203 5.203 15 C -0.102 4.102 16 C 0.239 3.761 17 O -0.439 6.439 18 N -0.232 5.232 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.522 5.522 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 C -0.094 4.094 28 C -0.121 4.121 29 H 0.118 0.882 30 C -0.010 4.010 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.127 0.873 34 H 0.206 0.794 35 H 0.191 0.809 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.063 0.937 39 H 0.119 0.881 40 H 0.070 0.930 41 H 0.109 0.891 42 H 0.202 0.798 43 H 0.084 0.916 44 H 0.065 0.935 45 H 0.103 0.897 46 H 0.097 0.903 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -22.549 14.313 7.025 27.616 hybrid contribution 0.693 -1.557 2.168 2.758 sum -21.856 12.756 9.193 26.924 Atomic orbital electron populations 1.22337 0.72485 1.05887 1.04743 1.45631 1.07921 1.01632 1.49443 1.73234 1.04525 1.13492 1.19856 1.23663 0.93462 0.95092 1.05483 1.22803 0.96072 0.95737 1.08056 1.21258 0.91625 0.89333 1.14079 1.16395 0.84291 0.82366 0.76757 1.90793 1.16581 1.83971 1.50974 1.48704 1.09666 1.06481 1.69134 1.23229 0.80276 1.01857 0.98582 1.23181 0.94856 0.94754 0.99171 0.87927 1.23611 0.97208 0.88338 0.99508 1.65431 1.00189 1.02639 1.52008 1.22097 0.93939 0.98136 0.95994 1.19587 0.84730 0.84403 0.87374 1.90556 1.82173 1.43308 1.27857 1.42214 1.12953 1.39842 1.28234 1.19415 0.86916 1.24846 1.12055 0.86273 1.25039 0.95277 0.97823 0.98084 1.69618 1.03141 1.39481 1.39924 0.86676 0.78474 0.81412 0.82820 1.19629 1.20222 1.19582 1.23330 0.90759 0.97492 0.97845 1.22955 0.96286 0.94713 0.98118 0.88240 1.22679 1.01677 0.78448 0.98180 0.89619 0.88874 0.87315 0.79403 0.80906 0.88071 0.89910 0.93732 0.88145 0.92974 0.89108 0.79785 0.91627 0.93504 0.89665 0.90344 0.89463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.64 10.85 59.84 0.65 1.29 16 2 N -0.26 -2.69 3.75 -63.89 -0.24 -2.93 16 3 N -0.28 -2.97 11.90 30.59 0.36 -2.61 16 4 C 0.00 -0.01 12.03 -17.43 -0.21 -0.22 16 5 C -0.20 -1.74 9.38 -38.98 -0.37 -2.11 16 6 C -0.03 -0.37 6.89 -82.06 -0.57 -0.93 16 7 C 0.61 6.94 7.86 -12.64 -0.10 6.85 16 8 O -0.54 -7.29 15.08 5.25 0.08 -7.21 16 9 N -0.61 -5.82 3.31 -170.61 -0.57 -6.38 16 10 C 0.08 0.67 5.57 -2.52 -0.01 0.66 16 11 C -0.10 -0.97 4.23 -87.15 -0.37 -1.34 16 12 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 13 C 0.04 0.53 5.50 -1.26 -0.01 0.52 16 14 N -0.48 -6.81 4.99 -230.08 -1.15 -7.96 16 15 C 0.03 0.47 5.34 -4.98 -0.03 0.44 16 16 C 0.45 9.83 7.64 -10.98 -0.08 9.75 16 17 O -0.56 -14.34 14.85 5.55 0.08 -14.26 16 18 N -0.59 -13.64 5.09 -10.96 -0.06 -13.69 16 19 C -0.30 -8.39 10.16 -14.93 -0.15 -8.54 16 20 H 0.12 3.77 7.39 -52.49 -0.39 3.39 16 21 C 0.04 1.09 5.50 -17.47 -0.10 1.00 16 22 N -0.88 -25.38 13.96 55.50 0.77 -24.61 16 23 Si 0.88 18.95 27.74 -169.99 -4.71 14.24 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.27 -5.26 6.52 56.52 0.37 -4.89 16 27 C 0.03 0.35 5.95 -2.07 -0.01 0.33 16 28 C -0.10 -0.92 4.12 -87.75 -0.36 -1.28 16 29 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 30 C 0.11 0.97 6.59 -2.30 -0.02 0.95 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.11 0.88 6.34 -51.93 -0.33 0.55 16 34 H 0.19 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.17 1.14 5.13 -52.49 -0.27 0.87 16 36 H 0.10 0.72 4.44 -51.93 -0.23 0.49 16 37 H 0.08 0.61 7.19 -51.93 -0.37 0.24 16 38 H 0.04 0.51 6.86 -51.93 -0.36 0.15 16 39 H 0.10 1.58 7.25 -51.93 -0.38 1.20 16 40 H 0.05 0.70 7.77 -51.93 -0.40 0.29 16 41 H 0.09 1.22 8.08 -51.93 -0.42 0.80 16 42 H 0.37 7.44 5.76 -40.82 -0.24 7.21 16 43 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.05 0.41 7.06 -51.93 -0.37 0.05 16 45 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.08 0.61 7.18 -51.93 -0.37 0.24 16 47 H 0.09 0.78 7.87 -51.93 -0.41 0.37 16 LS Contribution 374.41 15.07 5.64 5.64 Total: -1.00 -35.40 374.41 -7.74 -43.14 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -6.23 Total: 9.26 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: -1.73 Total: 7.36 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: -0.87 Total: -58.18 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: 0.16 Total: -21.47 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -4.71 Total: 14.24 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.40 -7.74 -43.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501209259.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.667 kcal (2) G-P(sol) polarization free energy of solvation -35.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds