Wall clock time and date at job start Wed Apr 1 2020 05:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.28448 * 125.18802 * 2 1 4 4 C 1.30862 * 110.92693 * 179.97438 * 3 2 1 5 5 C 1.39680 * 107.86315 * 359.97438 * 4 3 2 6 6 C 1.36601 * 125.19184 * 179.97438 * 2 1 3 7 7 C 1.47154 * 126.88353 * 0.02562 * 6 2 1 8 8 O 1.21630 * 119.99939 * 348.67271 * 7 6 2 9 9 N 1.34782 * 120.00272 * 168.67895 * 7 6 2 10 10 C 1.48318 * 128.19699 * 359.24350 * 9 7 6 11 11 C 1.54004 * 104.57234 * 221.86500 * 10 9 7 12 12 H 1.08999 * 112.88897 * 97.91125 * 11 10 9 13 13 C 1.55904 * 108.94601 * 224.42624 * 11 10 9 14 14 N 1.48728 * 104.36763 * 136.69795 * 13 11 10 15 15 C 1.46894 * 111.00486 * 198.76273 * 14 13 11 16 16 C 1.50707 * 109.46663 * 284.52612 * 15 14 13 17 17 O 1.21292 * 120.00207 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99840 * 180.02562 * 16 15 14 19 19 C 1.37099 * 120.00111 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99982 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00075 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00105 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00181 * 359.97438 * 21 19 18 24 24 H 1.48493 * 109.47149 * 90.00402 * 23 21 19 25 25 H 1.48498 * 109.47297 * 210.00743 * 23 21 19 26 26 H 1.48505 * 109.46978 * 330.00558 * 23 21 19 27 27 C 1.48734 * 103.49421 * 317.89958 * 14 13 11 28 28 C 1.54402 * 104.35112 * 41.79530 * 27 14 13 29 29 H 1.09005 * 112.56791 * 98.12819 * 28 27 14 30 30 C 1.48313 * 128.20713 * 179.56522 * 9 7 6 31 31 H 1.09004 * 109.47216 * 274.43598 * 1 2 3 32 32 H 1.08998 * 109.47237 * 34.44016 * 1 2 3 33 33 H 1.09000 * 109.47350 * 154.43633 * 1 2 3 34 34 H 1.07996 * 126.07056 * 180.26419 * 4 3 2 35 35 H 1.07993 * 127.32345 * 180.02562 * 5 4 3 36 36 H 1.08996 * 110.45959 * 340.62625 * 10 9 7 37 37 H 1.09004 * 110.45576 * 103.18712 * 10 9 7 38 38 H 1.09002 * 110.71111 * 17.84830 * 13 11 10 39 39 H 1.09002 * 110.29876 * 255.34525 * 13 11 10 40 40 H 1.09000 * 109.47538 * 44.52106 * 15 14 13 41 41 H 1.08994 * 109.47785 * 164.52714 * 15 14 13 42 42 H 0.97005 * 120.00186 * 0.02562 * 18 16 15 43 43 H 0.96997 * 120.00153 * 179.97438 * 22 21 19 44 44 H 1.09007 * 110.45508 * 283.08023 * 27 14 13 45 45 H 1.08998 * 110.56573 * 160.57043 * 27 14 13 46 46 H 1.09001 * 110.45351 * 256.81824 * 30 9 7 47 47 H 1.09004 * 110.45556 * 19.24654 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2051 1.0498 0.0000 4 6 3.4734 0.7274 0.0005 5 6 3.5612 -0.6666 0.0015 6 6 2.2522 -1.1163 0.0005 7 6 1.7993 -2.5165 0.0006 8 8 0.6294 -2.7772 0.2071 9 7 2.6809 -3.5100 -0.2280 10 6 4.1324 -3.4007 -0.5129 11 6 4.3857 -4.4266 -1.6332 12 1 4.4026 -3.9754 -2.6253 13 6 5.6823 -5.2268 -1.3032 14 7 5.3348 -6.6384 -1.6170 15 6 6.2635 -7.5678 -0.9601 16 6 7.5789 -7.5672 -1.6957 17 8 7.7278 -6.8623 -2.6714 18 7 8.5894 -8.3507 -1.2699 19 6 9.7862 -8.3498 -1.9387 20 1 9.9191 -7.7215 -2.8070 21 6 10.8279 -9.1581 -1.5000 22 7 11.9752 -9.1568 -2.1408 23 14 10.5979 -10.2454 0.0014 24 1 10.0783 -11.5705 -0.4220 25 1 11.9020 -10.4218 0.6893 26 1 9.6304 -9.6081 0.9305 27 6 3.9586 -6.7863 -1.0726 28 6 3.2472 -5.4746 -1.4691 29 1 2.6417 -5.5826 -2.3691 30 6 2.4283 -4.9711 -0.2607 31 1 -0.3634 0.0795 1.0246 32 1 -0.3633 0.8475 -0.5812 33 1 -0.3634 -0.9270 -0.4434 34 1 4.3047 1.4168 0.0047 35 1 4.4594 -1.2662 0.0026 36 1 4.3788 -2.3957 -0.8555 37 1 4.7147 -3.6557 0.3726 38 1 5.9413 -5.1235 -0.2494 39 1 6.5059 -4.8883 -1.9319 40 1 6.4238 -7.2532 0.0711 41 1 5.8412 -8.5725 -0.9719 42 1 8.4700 -8.9154 -0.4902 43 1 12.7024 -9.7207 -1.8344 44 1 3.9873 -6.8914 0.0120 45 1 3.4582 -7.6428 -1.5244 46 1 2.7794 -5.4390 0.6590 47 1 1.3668 -5.1709 -0.4076 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501209259.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:31 Heat of formation + Delta-G solvation = 30.409464 kcal Electronic energy + Delta-G solvation = -30255.275984 eV Core-core repulsion = 26054.207514 eV Total energy + Delta-G solvation = -4201.068470 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.58713 -41.54358 -40.29749 -39.46074 -36.98472 -35.87096 -34.37411 -33.72172 -33.14769 -32.02088 -31.22120 -28.95293 -28.08366 -26.93607 -26.62211 -25.18125 -23.19593 -22.67475 -22.32246 -21.22765 -20.68540 -20.52324 -20.02405 -18.39895 -17.84373 -17.64712 -17.37716 -16.92566 -16.83423 -16.52955 -16.38438 -16.02330 -15.84228 -15.46397 -15.20018 -14.83328 -14.70220 -14.55568 -14.37148 -14.13165 -13.97639 -13.76879 -13.47526 -13.36671 -13.13938 -12.98168 -12.97689 -12.52834 -12.41466 -12.34149 -12.05808 -11.95207 -11.89345 -11.62952 -11.49698 -11.45201 -11.23890 -10.38295 -10.36094 -10.19711 -10.05510 -9.89555 -9.30643 -8.37471 -5.97806 0.13956 1.22897 1.32254 1.38483 1.46872 1.58475 1.95206 2.02356 2.02718 2.26066 2.71013 3.10495 3.18556 3.25315 3.50829 3.56788 3.58803 3.85341 4.02525 4.08993 4.18456 4.19305 4.24781 4.26135 4.29319 4.36566 4.41876 4.49789 4.52361 4.59289 4.63912 4.70383 4.73602 4.78306 4.79806 4.88427 5.02111 5.15820 5.20404 5.30923 5.48281 5.56740 5.67096 5.92012 5.94783 6.07235 6.27024 6.64505 6.79682 6.93767 7.01447 7.45568 8.03825 8.80244 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021708 B = 0.002035 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.551316 B =13756.174744 C =14418.295590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.269 5.269 3 N -0.300 5.300 4 C -0.005 4.005 5 C -0.192 4.192 6 C -0.056 4.056 7 C 0.611 3.389 8 O -0.573 6.573 9 N -0.606 5.606 10 C 0.088 3.912 11 C -0.094 4.094 12 H 0.093 0.907 13 C 0.043 3.957 14 N -0.513 5.513 15 C 0.043 3.957 16 C 0.452 3.548 17 O -0.607 6.607 18 N -0.595 5.595 19 C -0.324 4.324 20 H 0.054 0.946 21 C -0.018 4.018 22 N -0.937 5.937 23 Si 0.965 3.035 24 H -0.259 1.259 25 H -0.278 1.278 26 H -0.229 1.229 27 C 0.040 3.960 28 C -0.094 4.094 29 H 0.097 0.903 30 C 0.115 3.885 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.217 0.783 35 H 0.195 0.805 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.086 0.914 41 H 0.119 0.881 42 H 0.389 0.611 43 H 0.278 0.722 44 H 0.072 0.928 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.996 12.322 11.352 28.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.057 5.057 3 N -0.133 5.133 4 C -0.180 4.180 5 C -0.221 4.221 6 C -0.184 4.184 7 C 0.400 3.600 8 O -0.453 6.453 9 N -0.337 5.337 10 C -0.033 4.033 11 C -0.114 4.114 12 H 0.111 0.889 13 C -0.085 4.085 14 N -0.237 5.237 15 C -0.088 4.088 16 C 0.240 3.760 17 O -0.490 6.490 18 N -0.237 5.237 19 C -0.453 4.453 20 H 0.073 0.927 21 C -0.216 4.216 22 N -0.578 5.578 23 Si 0.785 3.215 24 H -0.183 1.183 25 H -0.203 1.203 26 H -0.152 1.152 27 C -0.087 4.087 28 C -0.114 4.114 29 H 0.115 0.885 30 C -0.006 4.006 31 H 0.112 0.888 32 H 0.128 0.872 33 H 0.118 0.882 34 H 0.233 0.767 35 H 0.211 0.789 36 H 0.129 0.871 37 H 0.118 0.882 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.103 0.897 41 H 0.137 0.863 42 H 0.224 0.776 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.111 0.889 46 H 0.114 0.886 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -24.266 13.457 10.234 29.575 hybrid contribution 1.228 -1.186 1.005 1.981 sum -23.039 12.271 11.239 28.419 Atomic orbital electron populations 1.22451 0.71593 1.06154 1.05513 1.45884 1.08681 1.01549 1.49578 1.73219 1.05444 1.13991 1.20657 1.24225 0.93631 0.95756 1.04428 1.23109 0.96104 0.95972 1.06868 1.21410 0.92514 0.89209 1.15280 1.16528 0.84085 0.82875 0.76551 1.90773 1.17688 1.84407 1.52480 1.48732 1.10003 1.06676 1.68296 1.23264 0.79602 1.01868 0.98587 1.23052 0.93766 0.95131 0.99423 0.88871 1.23515 0.97141 0.88241 0.99583 1.65329 1.01909 1.02972 1.53490 1.21999 0.90241 1.00326 0.96256 1.20944 0.86381 0.82085 0.86574 1.90543 1.83434 1.44820 1.30222 1.42050 1.11825 1.41016 1.28821 1.18977 0.89743 1.25097 1.11497 0.92740 1.26120 0.94112 0.99193 1.02219 1.69809 1.04534 1.40922 1.42520 0.85365 0.79382 0.78921 0.77836 1.18347 1.20299 1.15196 1.23377 0.88072 0.98009 0.99270 1.22889 0.95894 0.94227 0.98424 0.88458 1.22733 1.01478 0.77909 0.98509 0.88831 0.87234 0.88156 0.76685 0.78879 0.87140 0.88191 0.91885 0.92358 0.89655 0.86256 0.77570 0.91284 0.91006 0.88850 0.88565 0.89788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 10.85 127.77 1.39 2.59 16 2 N -0.27 -5.39 3.75 -356.03 -1.33 -6.72 16 3 N -0.30 -6.08 11.90 -57.14 -0.68 -6.76 16 4 C -0.01 -0.08 12.03 85.19 1.02 0.94 16 5 C -0.19 -3.01 9.38 22.66 0.21 -2.79 16 6 C -0.06 -1.12 6.89 40.78 0.28 -0.83 16 7 C 0.61 13.05 7.86 86.58 0.68 13.73 16 8 O -0.57 -14.96 15.08 -4.13 -0.06 -15.02 16 9 N -0.61 -10.23 3.31 -811.93 -2.69 -12.92 16 10 C 0.09 1.20 5.57 86.37 0.48 1.68 16 11 C -0.09 -1.67 4.23 -8.55 -0.04 -1.70 16 12 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 13 C 0.04 1.03 5.50 86.95 0.48 1.51 16 14 N -0.51 -13.41 4.99 -881.84 -4.40 -17.81 16 15 C 0.04 1.19 5.34 85.56 0.46 1.64 16 16 C 0.45 19.42 7.64 87.66 0.67 20.09 16 17 O -0.61 -32.44 14.85 -3.07 -0.05 -32.49 16 18 N -0.59 -26.98 5.09 -306.98 -1.56 -28.55 16 19 C -0.32 -18.58 10.16 84.04 0.85 -17.72 16 20 H 0.05 3.75 7.39 -2.91 -0.02 3.72 16 21 C -0.02 -1.00 5.50 84.93 0.47 -0.53 16 22 N -0.94 -55.97 13.96 21.66 0.30 -55.67 16 23 Si 0.96 37.84 27.74 68.60 1.90 39.74 16 24 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 25 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 26 H -0.23 -7.38 6.52 99.48 0.65 -6.73 16 27 C 0.04 0.66 5.95 86.42 0.51 1.17 16 28 C -0.09 -1.48 4.12 -8.94 -0.04 -1.52 16 29 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 30 C 0.12 1.65 6.59 86.51 0.57 2.22 16 31 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.11 1.15 8.14 -2.39 -0.02 1.14 16 33 H 0.10 1.64 6.34 -2.39 -0.02 1.62 16 34 H 0.22 1.91 8.06 -2.91 -0.02 1.89 16 35 H 0.19 2.00 5.13 -2.91 -0.01 1.99 16 36 H 0.11 1.30 4.44 -2.39 -0.01 1.29 16 37 H 0.10 1.09 7.19 -2.38 -0.02 1.07 16 38 H 0.06 1.24 6.86 -2.39 -0.02 1.23 16 39 H 0.06 1.88 7.25 -2.39 -0.02 1.87 16 40 H 0.09 1.83 7.77 -2.39 -0.02 1.81 16 41 H 0.12 2.65 8.08 -2.39 -0.02 2.63 16 42 H 0.39 14.43 5.76 -92.70 -0.53 13.90 16 43 H 0.28 15.19 8.31 -92.71 -0.77 14.42 16 44 H 0.07 0.87 7.06 -2.38 -0.02 0.85 16 45 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.10 1.08 7.18 -2.39 -0.02 1.06 16 47 H 0.08 1.30 7.87 -2.38 -0.02 1.28 16 Total: -1.00 -83.77 374.41 -0.13 -83.90 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: 0.43 Total: 31.81 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: 8.00 Total: 20.49 kcal Atomic # 7 Polarization: -118.06 SS G_CDS: -10.37 Total: -128.43 kcal Atomic # 8 Polarization: -47.40 SS G_CDS: -0.11 Total: -47.51 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 1.90 Total: 39.74 kcal Total: -83.77 -0.13 -83.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501209259.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.313 kcal (2) G-P(sol) polarization free energy of solvation -83.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds